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PMC:7340597 / 1949-29959 JSONTXT

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LitCovid_Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T2 2923-2930 https://glytoucan.org/Structures/Glycans/G00021MO denotes heparin
T3 2923-2930 https://glytoucan.org/Structures/Glycans/G54161DR denotes heparin
T4 3213-3226 https://glytoucan.org/Structures/Glycans/G93424OB denotes galactomannan
T5 3282-3295 https://glytoucan.org/Structures/Glycans/G93424OB denotes galactomannan
T6 3297-3299 https://glytoucan.org/Structures/Glycans/G93424OB denotes GM
T7 3651-3653 https://glytoucan.org/Structures/Glycans/G93424OB denotes GM
T8 5419-5421 https://glytoucan.org/Structures/Glycans/G93424OB denotes GM
T9 6292-6294 https://glytoucan.org/Structures/Glycans/G93424OB denotes GM
T10 6467-6469 https://glytoucan.org/Structures/Glycans/G93424OB denotes GM
T11 6524-6526 https://glytoucan.org/Structures/Glycans/G93424OB denotes GM
T12 6625-6627 https://glytoucan.org/Structures/Glycans/G93424OB denotes GM
T13 6707-6709 https://glytoucan.org/Structures/Glycans/G93424OB denotes GM
T14 6825-6827 https://glytoucan.org/Structures/Glycans/G93424OB denotes GM
T15 6928-6930 https://glytoucan.org/Structures/Glycans/G93424OB denotes GM
T16 7000-7002 https://glytoucan.org/Structures/Glycans/G93424OB denotes GM
T17 7241-7243 https://glytoucan.org/Structures/Glycans/G93424OB denotes GM
T18 7245-7258 https://glytoucan.org/Structures/Glycans/G93424OB denotes galactomannan
T19 14074-14076 https://glytoucan.org/Structures/Glycans/G93424OB denotes GM
T20 14212-14214 https://glytoucan.org/Structures/Glycans/G93424OB denotes GM
T21 16115-16117 https://glytoucan.org/Structures/Glycans/G93424OB denotes GM
T22 17509-17511 https://glytoucan.org/Structures/Glycans/G93424OB denotes GM
T23 25066-25079 https://glytoucan.org/Structures/Glycans/G93424OB denotes galactomannan

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T4 306-312 Body_part denotes thorax http://purl.org/sig/ont/fma/fma9576
T5 589-593 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T6 1322-1328 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T7 1474-1482 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T8 1803-1807 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T9 1808-1814 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T10 2444-2448 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T11 2599-2605 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401
T12 2697-2712 Body_part denotes digestive tract http://purl.org/sig/ont/fma/fma317863
T13 2923-2930 Body_part denotes heparin http://purl.org/sig/ont/fma/fma82839
T14 3228-3233 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T15 3238-3244 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401
T16 3687-3692 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T17 3776-3780 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T18 3881-3886 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T19 3915-3919 Body_part denotes Lung http://purl.org/sig/ont/fma/fma7195
T20 4107-4112 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T21 4703-4708 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T22 5784-5789 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T23 5996-6001 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T24 6035-6040 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T25 7122-7130 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T26 7203-7209 Body_part denotes kidney http://purl.org/sig/ont/fma/fma7203
T27 7322-7327 Body_part denotes Chest http://purl.org/sig/ont/fma/fma9576
T28 7540-7548 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T29 7561-7573 Body_part denotes fibroblastic http://purl.org/sig/ont/fma/fma63877
T30 7675-7679 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T31 7856-7864 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T32 7923-7927 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T33 8108-8116 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T34 8117-8129 Body_part denotes fibroblastic http://purl.org/sig/ont/fma/fma63877
T35 8197-8201 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T36 8350-8358 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T37 8359-8371 Body_part denotes fibroblastic http://purl.org/sig/ont/fma/fma63877
T38 8372-8378 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T39 8439-8447 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T40 8516-8520 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T41 8595-8603 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T42 8616-8628 Body_part denotes fibroblastic http://purl.org/sig/ont/fma/fma63877
T43 8704-8708 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T44 8781-8789 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T45 8802-8814 Body_part denotes fibroblastic http://purl.org/sig/ont/fma/fma63877
T46 8841-8849 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T47 8918-8922 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T48 9042-9050 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T49 9063-9075 Body_part denotes fibroblastic http://purl.org/sig/ont/fma/fma63877
T50 9107-9115 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T51 9184-9188 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T52 9293-9301 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T53 9728-9733 Body_part denotes Chest http://purl.org/sig/ont/fma/fma9576
T54 9805-9810 Body_part denotes Chest http://purl.org/sig/ont/fma/fma9576
T55 9869-9874 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T56 9934-9939 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T57 10066-10070 Body_part denotes dens http://purl.org/sig/ont/fma/fma24043
T58 10135-10140 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T59 10828-10833 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T60 11236-11241 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T61 11345-11349 Body_part denotes dens http://purl.org/sig/ont/fma/fma24043
T62 11518-11522 Body_part denotes head http://purl.org/sig/ont/fma/fma7154
T63 11532-11537 Body_part denotes brain http://purl.org/sig/ont/fma/fma50801
T64 11602-11633 Body_part denotes right posterior cerebral artery http://purl.org/sig/ont/fma/fma50584
T65 11757-11761 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T66 11762-11768 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T67 11832-11844 Body_part denotes fibroblastic http://purl.org/sig/ont/fma/fma63877
T68 11896-11907 Body_part denotes histiocytes http://purl.org/sig/ont/fma/fma83585
T69 11942-11946 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T70 11947-11953 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T71 12039-12047 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T72 12100-12113 Body_part denotes blood vessels http://purl.org/sig/ont/fma/fma63183
T73 12100-12105 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T74 12121-12129 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T75 12463-12467 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T76 12495-12503 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T77 12504-12516 Body_part denotes fibroblastic http://purl.org/sig/ont/fma/fma63877
T78 12593-12601 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T79 12690-12701 Body_part denotes neutrophils http://purl.org/sig/ont/fma/fma62860
T80 12706-12717 Body_part denotes lymphocytes http://purl.org/sig/ont/fma/fma62863
T81 12779-12787 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T82 12952-12963 Body_part denotes pneumocytes http://purl.org/sig/ont/fma/fma62499
T83 13040-13045 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T84 13329-13334 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T85 13434-13457 Body_part denotes bronchovascular bundles http://purl.org/sig/ont/fma/fma84474
T86 13785-13790 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T87 13847-13857 Body_part denotes right lung http://purl.org/sig/ont/fma/fma7309
T88 14372-14376 Body_part denotes head http://purl.org/sig/ont/fma/fma7154
T89 14486-14499 Body_part denotes frontal lobes http://purl.org/sig/ont/fma/fma61824
T90 14584-14588 Body_part denotes head http://purl.org/sig/ont/fma/fma7154
T91 14737-14741 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T92 14742-14748 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T93 14803-14807 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T94 14822-14830 Body_part denotes Alveolar http://purl.org/sig/ont/fma/fma264783
T95 14943-14954 Body_part denotes pneumocytes http://purl.org/sig/ont/fma/fma62499
T96 14956-14976 Body_part denotes bronchial epithelium http://purl.org/sig/ont/fma/fma67782
T97 14966-14976 Body_part denotes epithelium http://purl.org/sig/ont/fma/fma9639
T98 14982-14995 Body_part denotes blood vessels http://purl.org/sig/ont/fma/fma63183
T99 14982-14987 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T100 15140-15148 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T101 15260-15265 Body_part denotes Chest http://purl.org/sig/ont/fma/fma9576
T102 15639-15644 Body_part denotes Chest http://purl.org/sig/ont/fma/fma9576
T103 15905-15909 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T104 16323-16327 Body_part denotes head http://purl.org/sig/ont/fma/fma7154
T105 16553-16557 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T106 16558-16564 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T107 16683-16694 Body_part denotes neutrophils http://purl.org/sig/ont/fma/fma62860
T108 16699-16710 Body_part denotes lymphocytes http://purl.org/sig/ont/fma/fma62863
T109 16738-16746 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T110 16747-16759 Body_part denotes fibroblastic http://purl.org/sig/ont/fma/fma63877
T111 16876-16884 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T112 17098-17106 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T113 17628-17633 Body_part denotes Chest http://purl.org/sig/ont/fma/fma9576
T114 17988-17992 Body_part denotes head http://purl.org/sig/ont/fma/fma7154
T115 18294-18298 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T116 18361-18369 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T117 18385-18397 Body_part denotes fibroblastic http://purl.org/sig/ont/fma/fma63877
T118 18398-18404 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T119 18742-18750 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T120 18787-18800 Body_part denotes blood vessels http://purl.org/sig/ont/fma/fma63183
T121 18787-18792 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T122 18870-18881 Body_part denotes eosinophils http://purl.org/sig/ont/fma/fma62861
T123 19966-19970 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T124 20735-20739 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T125 21383-21391 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T126 21468-21474 Body_part denotes plasma http://purl.org/sig/ont/fma/fma62970
T127 21475-21483 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T128 21567-21577 Body_part denotes fibroblast http://purl.org/sig/ont/fma/fma63877
T129 21594-21611 Body_part denotes connective tissue http://purl.org/sig/ont/fma/fma9640
T130 21616-21626 Body_part denotes fibroblast http://purl.org/sig/ont/fma/fma63877
T131 21659-21667 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T132 21727-21737 Body_part denotes fibroblast http://purl.org/sig/ont/fma/fma63877
T133 21998-22020 Body_part denotes alveolar type II cells http://purl.org/sig/ont/fma/fma62501
T134 22015-22020 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T135 22214-22226 Body_part denotes Fibroblastic http://purl.org/sig/ont/fma/fma63877
T136 22369-22371 Body_part denotes V2 http://purl.org/sig/ont/fma/fma13443|http://purl.org/sig/ont/fma/fma68615
T138 22820-22824 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T139 23022-23027 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T140 24516-24520 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T141 24543-24551 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T142 24601-24609 Body_part denotes cytokine http://purl.org/sig/ont/fma/fma84050
T143 24647-24660 Body_part denotes T-lymphocytes http://purl.org/sig/ont/fma/fma62870
T144 24681-24686 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T145 24720-24724 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T146 24725-24731 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T147 25208-25212 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T148 26096-26102 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T149 26274-26278 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T150 26918-26923 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T3 589-593 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T4 1322-1328 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T5 1803-1807 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T6 1808-1814 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T7 2444-2448 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T8 2599-2605 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311
T9 2697-2712 Body_part denotes digestive tract http://purl.obolibrary.org/obo/UBERON_0001555
T10 3228-3233 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T11 3238-3244 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311
T12 3687-3692 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T13 3776-3780 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T14 3915-3919 Body_part denotes Lung http://purl.obolibrary.org/obo/UBERON_0002048
T15 5784-5789 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T16 5996-6001 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T17 7203-7209 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113
T18 7322-7327 Body_part denotes Chest http://purl.obolibrary.org/obo/UBERON_0001443
T19 7620-7627 Body_part denotes vessels http://purl.obolibrary.org/obo/UBERON_0000055
T20 8372-8378 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T21 8418-8425 Body_part denotes exudate http://purl.obolibrary.org/obo/UBERON_0007780
T22 9728-9733 Body_part denotes Chest http://purl.obolibrary.org/obo/UBERON_0001443
T23 9805-9810 Body_part denotes Chest http://purl.obolibrary.org/obo/UBERON_0001443
T24 9869-9874 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T25 9934-9939 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T26 10828-10833 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T27 11236-11241 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T28 11518-11522 Body_part denotes head http://purl.obolibrary.org/obo/UBERON_0000033
T29 11532-11537 Body_part denotes brain http://purl.obolibrary.org/obo/UBERON_0000955
T30 11608-11633 Body_part denotes posterior cerebral artery http://purl.obolibrary.org/obo/UBERON_0001636
T31 11618-11633 Body_part denotes cerebral artery http://purl.obolibrary.org/obo/UBERON_0004449
T32 11627-11633 Body_part denotes artery http://purl.obolibrary.org/obo/UBERON_0001637
T33 11757-11761 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T34 11762-11768 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T35 11942-11946 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T36 11947-11953 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T37 12058-12065 Body_part denotes exudate http://purl.obolibrary.org/obo/UBERON_0007780
T38 12100-12113 Body_part denotes blood vessels http://purl.obolibrary.org/obo/UBERON_0001981
T39 12100-12105 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T40 12106-12113 Body_part denotes vessels http://purl.obolibrary.org/obo/UBERON_0000055
T41 12199-12205 Body_part denotes vessel http://purl.obolibrary.org/obo/UBERON_0000055
T42 12463-12467 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T43 12838-12845 Body_part denotes exudate http://purl.obolibrary.org/obo/UBERON_0007780
T44 12906-12912 Body_part denotes vessel http://purl.obolibrary.org/obo/UBERON_0000055
T45 13329-13334 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T46 13785-13790 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T47 13847-13857 Body_part denotes right lung http://purl.obolibrary.org/obo/UBERON_0002167
T48 13853-13857 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T49 14372-14376 Body_part denotes head http://purl.obolibrary.org/obo/UBERON_0000033
T50 14486-14499 Body_part denotes frontal lobes http://purl.obolibrary.org/obo/UBERON_0016525
T51 14584-14588 Body_part denotes head http://purl.obolibrary.org/obo/UBERON_0000033
T52 14737-14741 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T53 14742-14748 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T54 14803-14807 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T55 14956-14976 Body_part denotes bronchial epithelium http://purl.obolibrary.org/obo/UBERON_0002031
T56 14966-14976 Body_part denotes epithelium http://purl.obolibrary.org/obo/UBERON_0000483
T57 14982-14995 Body_part denotes blood vessels http://purl.obolibrary.org/obo/UBERON_0001981
T58 14982-14987 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T59 14988-14995 Body_part denotes vessels http://purl.obolibrary.org/obo/UBERON_0000055
T60 15260-15265 Body_part denotes Chest http://purl.obolibrary.org/obo/UBERON_0001443
T61 15639-15644 Body_part denotes Chest http://purl.obolibrary.org/obo/UBERON_0001443
T62 15905-15909 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T63 16323-16327 Body_part denotes head http://purl.obolibrary.org/obo/UBERON_0000033
T64 16553-16557 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T65 16558-16564 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T66 16876-16889 Body_part denotes alveolar wall http://purl.obolibrary.org/obo/UBERON_0004894
T67 17628-17633 Body_part denotes Chest http://purl.obolibrary.org/obo/UBERON_0001443
T68 17988-17992 Body_part denotes head http://purl.obolibrary.org/obo/UBERON_0000033
T69 18294-18298 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T70 18398-18404 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T71 18510-18517 Body_part denotes exudate http://purl.obolibrary.org/obo/UBERON_0007780
T72 18787-18800 Body_part denotes blood vessels http://purl.obolibrary.org/obo/UBERON_0001981
T73 18787-18792 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T74 18793-18800 Body_part denotes vessels http://purl.obolibrary.org/obo/UBERON_0000055
T75 19966-19970 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T76 20735-20739 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T77 21594-21611 Body_part denotes connective tissue http://purl.obolibrary.org/obo/UBERON_0002384
T78 21605-21611 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T79 22102-22126 Body_part denotes renin-angiotensin system http://purl.obolibrary.org/obo/UBERON_0018229
T80 22128-22131 Body_part denotes RAS http://purl.obolibrary.org/obo/UBERON_0018229
T81 22176-22179 Body_part denotes RAS http://purl.obolibrary.org/obo/UBERON_0018229
T82 22199-22202 Body_part denotes RAS http://purl.obolibrary.org/obo/UBERON_0018229
T83 22820-22824 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T84 23022-23027 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T85 24516-24520 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T86 24720-24724 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T87 24725-24731 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T88 25208-25212 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T89 26096-26102 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T90 26274-26278 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T91 26918-26923 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
119 78-86 Species denotes patients Tax:9606
120 208-216 Species denotes patients Tax:9606
121 494-502 Species denotes patients Tax:9606
122 1050-1058 Species denotes patients Tax:9606
123 1166-1174 Species denotes patients Tax:9606
124 1452-1460 Species denotes patients Tax:9606
125 1824-1832 Species denotes patients Tax:9606
126 42-66 Disease denotes coronavirus disease 2019 MESH:C000657245
127 68-76 Disease denotes COVID-19 MESH:C000657245
128 160-179 Disease denotes respiratory failure MESH:D012131
129 343-378 Disease denotes acute respiratory distress syndrome MESH:D012128
130 380-384 Disease denotes ARDS MESH:D012128
131 485-493 Disease denotes COVID-19 MESH:C000657245
132 575-579 Disease denotes ARDS MESH:D012128
133 910-924 Disease denotes thromboembolic MESH:D013923
134 955-968 Disease denotes aspergillosis MESH:D001228
135 998-1020 Disease denotes venous thromboembolism MESH:D054556
136 1041-1049 Disease denotes COVID-19 MESH:C000657245
137 1093-1116 Disease denotes pulmonary aspergillosis MESH:D055732
138 1157-1165 Disease denotes COVID-19 MESH:C000657245
139 1204-1212 Disease denotes COVID-19 MESH:C000657245
140 1221-1225 Disease denotes ARDS MESH:D012128
141 1286-1290 Disease denotes ARDS MESH:D012128
142 1351-1369 Disease denotes infectious disease MESH:D003141
143 1443-1451 Disease denotes COVID-19 MESH:C000657245
144 1474-1489 Disease denotes alveolar damage MESH:D055370
145 1510-1514 Disease denotes ARDS MESH:D012128
146 1561-1569 Disease denotes COVID-19 MESH:C000657245
147 1581-1604 Disease denotes pulmonary aspergillosis MESH:D055732
148 1681-1690 Disease denotes mortality MESH:D003643
149 1839-1844 Disease denotes COVID MESH:C000657245
150 1853-1857 Disease denotes ARDS MESH:D012128
151 2083-2091 Disease denotes COVID-19 MESH:C000657245
171 2189-2197 Species denotes patients Tax:9606
172 2224-2271 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049
173 2273-2283 Species denotes SARS-COV-2 Tax:2697049
174 2498-2508 Species denotes SARS-CoV-2 Tax:2697049
175 3552-3560 Species denotes patients Tax:9606
176 3697-3708 Species denotes Aspergillus Tax:746128
177 2736-2747 Chemical denotes chloroquine MESH:D002738
178 2923-2930 Chemical denotes heparin MESH:D006493
179 2932-2936 Chemical denotes LMWH MESH:D006495
180 2939-2949 Chemical denotes nadroparin MESH:D017762
181 3213-3226 Chemical denotes galactomannan MESH:C012990
182 3282-3295 Chemical denotes galactomannan MESH:C012990
183 3297-3299 Chemical denotes GM MESH:C012990
184 3651-3653 Chemical denotes GM MESH:C012990
185 2328-2347 Disease denotes respiratory failure MESH:D012131
186 3027-3050 Disease denotes pulmonary aspergillosis MESH:D055732
187 3112-3135 Disease denotes Pulmonary aspergillosis MESH:D055732
188 3456-3479 Disease denotes pulmonary aspergillosis MESH:D055732
189 3612-3621 Disease denotes infection MESH:D007239
197 3806-3814 Species denotes patients Tax:9606
198 4145-4153 Chemical denotes formalin MESH:D005557
199 4167-4175 Chemical denotes paraffin MESH:D010232
200 4205-4216 Chemical denotes Hematoxylin MESH:D006416
201 4221-4226 Chemical denotes eosin MESH:D004801
202 4228-4231 Chemical denotes H&E
203 4238-4251 Chemical denotes periodic acid MESH:D010504
205 4406-4413 Species denotes patient Tax:9606
219 6546-6567 Species denotes Aspergillus fumigatus Tax:746128
220 6728-6749 Species denotes Aspergillus fumigatus Tax:746128
221 6750-6770 Species denotes Enterococcus faecium Tax:1352
222 6847-6867 Species denotes Enterococcus faecium Tax:1352
223 7022-7043 Species denotes Enterococcus faecalis Tax:1351
224 6292-6294 Chemical denotes GM MESH:C012990
225 6343-6354 Chemical denotes Chloroquine MESH:D002738
226 6355-6367 Chemical denotes Prednisolone MESH:D011239
227 6410-6422 Chemical denotes prednisolone MESH:D011239
228 6707-6709 Chemical denotes GM MESH:C012990
229 6825-6827 Chemical denotes GM MESH:C012990
230 6253-6257 Disease denotes ARDS MESH:D012128
231 6904-6906 Disease denotes DM MESH:D009223
233 6103-6110 Species denotes Patient Tax:9606
244 7190-7193 Gene denotes CKI Gene:1119
245 7241-7243 Chemical denotes GM MESH:C012990
246 7068-7108 Disease denotes ARDS acute respiratory distress syndrome MESH:D012128
247 7145-7153 Disease denotes COVID-19 MESH:C000657245
248 7165-7188 Disease denotes pulmonary aspergillosis MESH:D055732
249 7195-7216 Disease denotes chronic kidney injury MESH:D051436
250 7218-7220 Disease denotes DM MESH:D009223
251 7222-7239 Disease denotes diabetes mellitus MESH:D003920
252 7264-7276 Disease denotes hypertension MESH:D006973
253 7281-7299 Disease denotes pulmonary embolism MESH:D011655
263 7629-7640 Disease denotes hyperplasia MESH:D006965
264 7801-7835 Disease denotes subsegmental PE Extensive fibrosis MESH:D005355
265 7877-7888 Disease denotes hyperplasia MESH:D006965
266 7970-7978 Disease denotes Fibrosis MESH:D005355
267 8151-8162 Disease denotes hyperplasia MESH:D006965
268 8470-8481 Disease denotes hyperplasia MESH:D006965
269 8658-8669 Disease denotes hyperplasia MESH:D006965
270 8872-8883 Disease denotes hyperplasia MESH:D006965
271 9138-9149 Disease denotes hyperplasia MESH:D006965
276 9270-9279 Disease denotes pneumonia MESH:D011014
277 9293-9308 Disease denotes alveolar damage MESH:D055370
278 9353-9362 Disease denotes pneumonia MESH:D011014
279 9367-9385 Disease denotes pulmonary embolism MESH:D011655
304 4647-4655 Species denotes patients Tax:9606
305 4710-4718 Species denotes Patients Tax:9606
306 4776-4784 Species denotes patients Tax:9606
307 4808-4816 Species denotes patients Tax:9606
308 4867-4874 Species denotes patient Tax:9606
309 5127-5135 Species denotes Patients Tax:9606
310 5211-5219 Species denotes patients Tax:9606
311 5338-5346 Species denotes patients Tax:9606
312 5552-5560 Species denotes patients Tax:9606
313 5729-5737 Species denotes patients Tax:9606
314 6063-6071 Species denotes patients Tax:9606
315 5445-5453 Species denotes patients Tax:9606
316 4967-4979 Chemical denotes prednisolone MESH:D011239
317 5491-5503 Chemical denotes voriconazole MESH:D065819
318 5508-5521 Chemical denotes anidulafungin MESH:D000077612
319 5592-5604 Chemical denotes prednisolone MESH:D011239
320 5702-5709 Chemical denotes steroid MESH:D013256
321 5942-5949 Chemical denotes steroid MESH:D013256
322 4844-4861 Disease denotes pulmonary disease MESH:D008171
323 5248-5266 Disease denotes pulmonary embolism MESH:D011655
324 5771-5780 Disease denotes pneumonia MESH:D011014
325 5820-5828 Disease denotes fibrosis MESH:D005355
326 5830-5851 Disease denotes Nosocomial infections MESH:D003428
327 5872-5895 Disease denotes pulmonary aspergillosis MESH:D055732
330 9842-9849 Species denotes patient Tax:9606
331 10066-10070 Chemical denotes dens MESH:D004052
334 9487-9495 Species denotes patients Tax:9606
335 9767-9775 Species denotes patients Tax:9606
337 10651-10660 Disease denotes pneumonia MESH:D011014
351 11056-11063 Species denotes patient Tax:9606
352 11470-11477 Species denotes Patient Tax:9606
353 11639-11646 Species denotes patient Tax:9606
354 11345-11349 Chemical denotes dens MESH:D004052
355 10790-10798 Disease denotes weakness MESH:D018908
356 10800-10805 Disease denotes fever MESH:D005334
357 10810-10818 Disease denotes dyspnoea MESH:D004417
358 11124-11143 Disease denotes acute renal failure MESH:D058186
359 11264-11280 Disease denotes pulmonary emboli MESH:D011655
360 11413-11433 Disease denotes nosocomial infection MESH:D003428
361 11532-11546 Disease denotes brain ischemia MESH:D002545
362 11554-11564 Disease denotes infarction MESH:D007238
363 11647-11651 Disease denotes died MESH:D003643
369 12552-12561 Disease denotes pneumonia MESH:D011014
370 12630-12638 Disease denotes fibrosis MESH:D005355
371 12779-12794 Disease denotes alveolar damage MESH:D055370
372 12971-12986 Disease denotes viral infection MESH:D001102
373 13006-13017 Disease denotes hyperplasia MESH:D006965
375 12311-12320 Species denotes SARS-CoV2 Tax:2697049
377 13116-13124 Disease denotes Fibrosis MESH:D005355
394 14259-14280 Species denotes Aspergillus fumigatus Tax:746128
395 14660-14667 Species denotes patient Tax:9606
396 15086-15093 Species denotes patient Tax:9606
397 13711-13723 Chemical denotes prednisolone MESH:D011239
398 14074-14076 Chemical denotes GM MESH:C012990
399 14293-14305 Chemical denotes prednisolone MESH:D011239
400 13281-13290 Disease denotes diarrhoea MESH:D003967
401 13295-13314 Disease denotes shortness of breath MESH:D004417
402 13687-13691 Disease denotes ARDS MESH:D012128
403 13823-13839 Disease denotes pulmonary emboli MESH:D011655
404 14126-14135 Disease denotes infection MESH:D007239
405 14424-14433 Disease denotes epileptic MESH:D004827
406 14466-14477 Disease denotes haemorrhage MESH:D006470
407 14547-14567 Disease denotes cerebral haemorrhage MESH:D002543
408 14888-14896 Disease denotes fibrosis MESH:D005355
409 15097-15115 Disease denotes pulmonary fibrosis MESH:D011658
411 15140-15155 Disease denotes alveolar damage MESH:D055370
423 16286-16293 Species denotes patient Tax:9606
424 16460-16467 Species denotes patient Tax:9606
425 16026-16038 Chemical denotes prednisolone MESH:D011239
426 16068-16080 Chemical denotes prednisolone MESH:D011239
427 15249-15258 Disease denotes hypoxemia MESH:D000860
428 15321-15337 Disease denotes pulmonary emboli MESH:D011655
429 15691-15707 Disease denotes pulmonary emboli MESH:D011655
430 15905-15916 Disease denotes lung injury MESH:D055370
431 15993-16001 Disease denotes fibrosis MESH:D005355
432 16335-16343 Disease denotes ischemia MESH:D007511
433 16364-16375 Disease denotes haemorrhage MESH:D006470
435 17098-17113 Disease denotes alveolar damage MESH:D055370
437 17161-17170 Disease denotes pneumonia MESH:D011014
450 17315-17322 Species denotes Patient Tax:9606
451 17525-17546 Species denotes Aspergillus fumigatus Tax:746128
452 17915-17922 Species denotes patient Tax:9606
453 18203-18210 Species denotes patient Tax:9606
454 17551-17563 Species denotes Enterococcus Tax:1351
455 17509-17511 Chemical denotes GM MESH:C012990
456 17217-17240 Disease denotes cardiopulmonary disease MESH:D006323
457 17295-17300 Disease denotes fever MESH:D005334
458 17305-17313 Disease denotes dyspnoea MESH:D004417
459 17456-17465 Disease denotes infection MESH:D007239
460 17666-17682 Disease denotes pulmonary emboli MESH:D011655
461 18010-18039 Disease denotes bilateral cerebellar ischemia MESH:D007511
466 18294-18305 Disease denotes lung injury MESH:D055370
467 18444-18453 Disease denotes pneumonia MESH:D011014
468 18612-18621 Disease denotes pneumonia MESH:D011014
469 19036-19045 Disease denotes pneumonia MESH:D011014
483 19135-19142 Species denotes patient Tax:9606
484 19314-19322 Species denotes patients Tax:9606
485 19451-19459 Species denotes patients Tax:9606
486 19622-19630 Species denotes patients Tax:9606
487 19692-19700 Species denotes patients Tax:9606
488 19846-19854 Species denotes patients Tax:9606
489 19110-19124 Disease denotes critically ill MESH:D016638
490 19129-19134 Disease denotes COVID MESH:C000657245
491 19279-19287 Disease denotes fibrosis MESH:D005355
492 19337-19346 Disease denotes pneumonia MESH:D011014
493 19442-19450 Disease denotes COVID-19 MESH:C000657245
494 19613-19621 Disease denotes COVID-19 MESH:C000657245
495 19744-19753 Disease denotes pneumonia MESH:D011014
508 20449-20457 Species denotes patients Tax:9606
509 20588-20596 Species denotes patients Tax:9606
510 20986-20994 Species denotes patients Tax:9606
511 21027-21035 Species denotes patients Tax:9606
512 21093-21100 Species denotes patient Tax:9606
513 21202-21210 Species denotes patients Tax:9606
514 20597-20601 Disease denotes died MESH:D003643
515 20735-20746 Disease denotes lung injury MESH:D055370
516 20758-20774 Disease denotes viral infections MESH:D001102
517 20837-20847 Disease denotes infections MESH:D007239
518 20883-20915 Disease denotes Middle East Respiratory Syndrome MESH:D018352
519 21000-21005 Disease denotes COVID MESH:C000657245
540 21675-21709 Gene denotes Vascular endothelial growth factor Gene:7422
541 21711-21715 Gene denotes VEGF Gene:7422
542 21721-21751 Gene denotes basic fibroblast growth factor Gene:2247
543 21753-21757 Gene denotes bFGF Gene:2247
544 21919-21923 Gene denotes ACE2 Gene:59272
545 22043-22047 Gene denotes ACE2 Gene:59272
546 22065-22070 Gene denotes ACE 2 Gene:59272
547 22155-22159 Gene denotes ACE2 Gene:59272
548 22242-22246 Gene denotes ACE2 Gene:59272
549 22293-22297 Gene denotes VEGF Gene:7422
550 22328-22332 Gene denotes ACE2 Gene:59272
551 22375-22379 Gene denotes ACE2 Gene:59272
552 21978-21988 Species denotes SARS-CoV-2 Tax:2697049
553 22361-22371 Species denotes SARS-CO-V2 Tax:2697049
554 21383-21409 Disease denotes alveolar epithelial injury MESH:D002277
555 21424-21441 Disease denotes epithelial injury MESH:D002277
556 21793-21802 Disease denotes pneumonia MESH:D011014
557 21877-21886 Disease denotes pneumonia MESH:D011014
558 22421-22428 Disease denotes COVID19 MESH:C000657245
559 22448-22457 Disease denotes pneumonia MESH:D011014
565 22562-22570 Species denotes patients Tax:9606
566 22580-22591 Chemical denotes chloroquine MESH:D002738
567 22704-22715 Chemical denotes chloroquine MESH:D002738
568 22739-22763 Disease denotes cardiovascular disorders MESH:D002318
569 22807-22832 Disease denotes interstitial lung disease MESH:D017563
577 23052-23060 Species denotes patients Tax:9606
578 23563-23571 Chemical denotes steroids MESH:D013256
579 23295-23304 Disease denotes pneumonia MESH:D011014
580 23316-23337 Disease denotes nosocomial infections MESH:D003428
581 23634-23654 Disease denotes SARS-CoV-2 pneumonia MESH:C000657245
582 23700-23707 Disease denotes COVID19 MESH:C000657245
583 23727-23736 Disease denotes pneumonia MESH:D011014
605 24661-24664 Gene denotes CD4 Gene:920
606 24673-24676 Gene denotes CD8 Gene:925
607 23855-23863 Species denotes patients Tax:9606
608 24193-24201 Species denotes patients Tax:9606
609 24918-24926 Species denotes patients Tax:9606
610 23949-23956 Chemical denotes steroid MESH:D013256
611 25066-25079 Chemical denotes galactomannan MESH:C012990
612 23826-23845 Disease denotes secondary infection MESH:D060085
613 23849-23854 Disease denotes COVID MESH:C000657245
614 23869-23902 Disease denotes invasive aspergillus co-infection MESH:D060085
615 23996-24028 Disease denotes invasive pulmonary aspergillosis MESH:D055744
616 24144-24153 Disease denotes pneumonia MESH:D011014
617 24239-24258 Disease denotes respiratory failure MESH:D012131
618 24269-24278 Disease denotes mortality MESH:D003643
619 24294-24302 Disease denotes COVID-19 MESH:C000657245
620 24314-24337 Disease denotes pulmonary aspergillosis MESH:D055732
621 24516-24527 Disease denotes lung damage MESH:D008171
622 24693-24712 Disease denotes Secondary infection MESH:D060085
623 24909-24917 Disease denotes COVID-19 MESH:C000657245
624 24979-24987 Disease denotes COVID-19 MESH:C000657245
625 24999-25022 Disease denotes pulmonary aspergillosis MESH:D055732
637 25330-25338 Species denotes patients Tax:9606
638 25386-25394 Species denotes patients Tax:9606
639 25631-25639 Species denotes patients Tax:9606
640 25964-25971 Chemical denotes steroid MESH:D013256
641 25245-25267 Disease denotes invasive aspergillosis MESH:D055744
642 25290-25322 Disease denotes invasive pulmonary aspergillosis MESH:D055744
643 25429-25451 Disease denotes invasive aspergillosis MESH:D055744
644 25508-25514 Disease denotes deaths MESH:D003643
645 25575-25587 Disease denotes septic shock MESH:D012772
646 25600-25613 Disease denotes aspergillosis MESH:D001228
647 25768-25803 Disease denotes respiratory conditions deteriorated MESH:D012131
650 26437-26445 Disease denotes COVID-19 MESH:C000657245
651 26529-26549 Disease denotes SARS-CoV-2 infection MESH:C000657245
664 26779-26787 Species denotes patients Tax:9606
665 27215-27223 Species denotes patients Tax:9606
666 26694-26702 Disease denotes COVID-19 MESH:C000657245
667 26703-26707 Disease denotes ARDS MESH:D012128
668 26765-26773 Disease denotes COVID-19 MESH:C000657245
669 26774-26778 Disease denotes ARDS MESH:D012128
670 26973-26986 Disease denotes aspergillosis MESH:D001228
671 27158-27166 Disease denotes COVID-19 MESH:C000657245
672 27175-27179 Disease denotes ARDS MESH:D012128
673 27263-27270 Disease denotes COVID19 MESH:C000657245
674 27385-27392 Disease denotes COVID19 MESH:C000657245
675 27404-27427 Disease denotes pulmonary aspergillosis MESH:D055732

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T35 42-66 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T36 68-76 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T37 160-179 Disease denotes respiratory failure http://purl.obolibrary.org/obo/MONDO_0021113
T38 343-378 Disease denotes acute respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0006502
T39 349-378 Disease denotes respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0009971
T40 380-384 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T41 485-493 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T42 575-579 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T43 955-968 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T44 998-1020 Disease denotes venous thromboembolism http://purl.obolibrary.org/obo/MONDO_0005399
T45 1041-1049 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T46 1103-1116 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T47 1157-1165 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T48 1204-1212 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T49 1221-1225 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T50 1286-1290 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T51 1351-1369 Disease denotes infectious disease http://purl.obolibrary.org/obo/MONDO_0005550
T52 1443-1451 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T53 1510-1514 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T54 1561-1569 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T55 1591-1604 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T56 1606-1610 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T57 1744-1748 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T58 1853-1857 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T59 2083-2091 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T60 2224-2271 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T61 2224-2257 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T62 2273-2277 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T63 2328-2347 Disease denotes respiratory failure http://purl.obolibrary.org/obo/MONDO_0021113
T64 2498-2506 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T65 3037-3050 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T66 3122-3135 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T67 3435-3444 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T68 3466-3479 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T69 3566-3570 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T70 3612-3621 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T71 4274-4277 Disease denotes PAS http://purl.obolibrary.org/obo/MONDO_0004277
T72 4844-4861 Disease denotes pulmonary disease http://purl.obolibrary.org/obo/MONDO_0005275
T73 5248-5266 Disease denotes pulmonary embolism http://purl.obolibrary.org/obo/MONDO_0005279
T74 5304-5308 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T75 5382-5386 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T76 5627-5631 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T77 5760-5780 Disease denotes organizing pneumonia http://purl.obolibrary.org/obo/MONDO_0015265|http://purl.obolibrary.org/obo/MONDO_0056821
T79 5771-5780 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T80 5830-5851 Disease denotes Nosocomial infections http://purl.obolibrary.org/obo/MONDO_0043544
T81 5882-5895 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T82 6253-6257 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T83 6338-6342 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T84 6904-6906 Disease denotes DM http://purl.obolibrary.org/obo/MONDO_0005015|http://purl.obolibrary.org/obo/MONDO_0016367
T86 7068-7072 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T87 7073-7108 Disease denotes acute respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0006502
T88 7079-7108 Disease denotes respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0009971
T89 7139-7143 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T90 7145-7153 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T91 7175-7188 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T92 7210-7216 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T93 7218-7220 Disease denotes DM http://purl.obolibrary.org/obo/MONDO_0005015|http://purl.obolibrary.org/obo/MONDO_0016367
T95 7222-7239 Disease denotes diabetes mellitus http://purl.obolibrary.org/obo/MONDO_0005015
T96 7264-7276 Disease denotes hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T97 7281-7299 Disease denotes pulmonary embolism http://purl.obolibrary.org/obo/MONDO_0005279
T98 7629-7640 Disease denotes hyperplasia http://purl.obolibrary.org/obo/MONDO_0005043
T99 7722-7724 Disease denotes OP http://purl.obolibrary.org/obo/MONDO_0015265
T100 7771-7785 Disease denotes bronchiectasis http://purl.obolibrary.org/obo/MONDO_0004822
T101 7877-7888 Disease denotes hyperplasia http://purl.obolibrary.org/obo/MONDO_0005043
T102 8017-8031 Disease denotes bronchiectasis http://purl.obolibrary.org/obo/MONDO_0004822
T103 8151-8162 Disease denotes hyperplasia http://purl.obolibrary.org/obo/MONDO_0005043
T104 8298-8312 Disease denotes bronchiectasis http://purl.obolibrary.org/obo/MONDO_0004822
T105 8470-8481 Disease denotes hyperplasia http://purl.obolibrary.org/obo/MONDO_0005043
T106 8658-8669 Disease denotes hyperplasia http://purl.obolibrary.org/obo/MONDO_0005043
T107 8751-8753 Disease denotes OP http://purl.obolibrary.org/obo/MONDO_0015265
T108 8872-8883 Disease denotes hyperplasia http://purl.obolibrary.org/obo/MONDO_0005043
T109 8965-8967 Disease denotes OP http://purl.obolibrary.org/obo/MONDO_0015265
T110 9004-9018 Disease denotes bronchiectasis http://purl.obolibrary.org/obo/MONDO_0004822
T111 9138-9149 Disease denotes hyperplasia http://purl.obolibrary.org/obo/MONDO_0005043
T112 9231-9233 Disease denotes OP http://purl.obolibrary.org/obo/MONDO_0015265
T113 9259-9279 Disease denotes organizing pneumonia http://purl.obolibrary.org/obo/MONDO_0015265|http://purl.obolibrary.org/obo/MONDO_0056821
T115 9270-9279 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T116 9339-9341 Disease denotes OP http://purl.obolibrary.org/obo/MONDO_0015265
T117 9342-9362 Disease denotes organizing pneumonia http://purl.obolibrary.org/obo/MONDO_0015265|http://purl.obolibrary.org/obo/MONDO_0056821
T119 9353-9362 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T120 9367-9385 Disease denotes pulmonary embolism http://purl.obolibrary.org/obo/MONDO_0005279
T121 10185-10199 Disease denotes bronchiectasis http://purl.obolibrary.org/obo/MONDO_0004822
T122 10340-10354 Disease denotes bronchiectasis http://purl.obolibrary.org/obo/MONDO_0004822
T123 10609-10623 Disease denotes bronchiectasis http://purl.obolibrary.org/obo/MONDO_0004822
T124 10640-10660 Disease denotes Organizing pneumonia http://purl.obolibrary.org/obo/MONDO_0015265|http://purl.obolibrary.org/obo/MONDO_0056821
T126 10651-10660 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T127 11124-11143 Disease denotes acute renal failure http://purl.obolibrary.org/obo/MONDO_0002492
T128 11130-11143 Disease denotes renal failure http://purl.obolibrary.org/obo/MONDO_0001106
T129 11413-11433 Disease denotes nosocomial infection http://purl.obolibrary.org/obo/MONDO_0043544
T130 11424-11433 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T131 11532-11546 Disease denotes brain ischemia http://purl.obolibrary.org/obo/MONDO_0005299
T132 11538-11546 Disease denotes ischemia http://purl.obolibrary.org/obo/MONDO_0005053
T133 12172-12180 Disease denotes thrombus http://purl.obolibrary.org/obo/MONDO_0000831
T134 12311-12315 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T135 12321-12330 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T136 12360-12363 Disease denotes PAS http://purl.obolibrary.org/obo/MONDO_0004277
T137 12422-12442 Disease denotes organizing pneumonia http://purl.obolibrary.org/obo/MONDO_0015265|http://purl.obolibrary.org/obo/MONDO_0056821
T139 12433-12442 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T140 12541-12561 Disease denotes organizing pneumonia http://purl.obolibrary.org/obo/MONDO_0015265|http://purl.obolibrary.org/obo/MONDO_0056821
T142 12552-12561 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T143 12887-12895 Disease denotes thrombus http://purl.obolibrary.org/obo/MONDO_0000831
T144 12971-12986 Disease denotes viral infection http://purl.obolibrary.org/obo/MONDO_0005108
T145 12977-12986 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T146 13006-13017 Disease denotes hyperplasia http://purl.obolibrary.org/obo/MONDO_0005043
T147 13281-13290 Disease denotes diarrhoea http://purl.obolibrary.org/obo/MONDO_0001673
T148 13545-13559 Disease denotes bronchiectasis http://purl.obolibrary.org/obo/MONDO_0004822
T149 13687-13691 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T150 14017-14031 Disease denotes bronchiectasis http://purl.obolibrary.org/obo/MONDO_0004822
T151 14119-14135 Disease denotes fungal infection http://purl.obolibrary.org/obo/MONDO_0002041
T152 14126-14135 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T153 15020-15023 Disease denotes PAS http://purl.obolibrary.org/obo/MONDO_0004277
T154 15097-15115 Disease denotes pulmonary fibrosis http://purl.obolibrary.org/obo/MONDO_0002771
T155 15910-15916 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T156 16335-16343 Disease denotes ischemia http://purl.obolibrary.org/obo/MONDO_0005053
T157 16988-16991 Disease denotes PAS http://purl.obolibrary.org/obo/MONDO_0004277
T158 17150-17170 Disease denotes organizing pneumonia http://purl.obolibrary.org/obo/MONDO_0015265|http://purl.obolibrary.org/obo/MONDO_0056821
T160 17161-17170 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T161 17217-17240 Disease denotes cardiopulmonary disease http://purl.obolibrary.org/obo/MONDO_0004596
T162 17456-17465 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T163 17883-17897 Disease denotes bronchiectasis http://purl.obolibrary.org/obo/MONDO_0004822
T164 18031-18039 Disease denotes ischemia http://purl.obolibrary.org/obo/MONDO_0005053
T165 18299-18305 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T166 18433-18453 Disease denotes organizing pneumonia http://purl.obolibrary.org/obo/MONDO_0015265|http://purl.obolibrary.org/obo/MONDO_0056821
T168 18444-18453 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T169 18601-18621 Disease denotes organizing pneumonia http://purl.obolibrary.org/obo/MONDO_0015265|http://purl.obolibrary.org/obo/MONDO_0056821
T171 18612-18621 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T172 18907-18910 Disease denotes PAS http://purl.obolibrary.org/obo/MONDO_0004277
T173 19025-19045 Disease denotes organizing pneumonia http://purl.obolibrary.org/obo/MONDO_0015265|http://purl.obolibrary.org/obo/MONDO_0056821
T175 19036-19045 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T176 19326-19346 Disease denotes organizing pneumonia http://purl.obolibrary.org/obo/MONDO_0015265|http://purl.obolibrary.org/obo/MONDO_0056821
T178 19337-19346 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T179 19348-19350 Disease denotes OP http://purl.obolibrary.org/obo/MONDO_0015265
T180 19442-19450 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T181 19613-19621 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T182 19733-19753 Disease denotes organizing pneumonia http://purl.obolibrary.org/obo/MONDO_0015265|http://purl.obolibrary.org/obo/MONDO_0056821
T184 19744-19753 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T185 19960-19962 Disease denotes OP http://purl.obolibrary.org/obo/MONDO_0015265
T186 20077-20079 Disease denotes OP http://purl.obolibrary.org/obo/MONDO_0015265
T187 20145-20147 Disease denotes OP http://purl.obolibrary.org/obo/MONDO_0015265
T188 20673-20675 Disease denotes OP http://purl.obolibrary.org/obo/MONDO_0015265
T189 20740-20746 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T190 20758-20774 Disease denotes viral infections http://purl.obolibrary.org/obo/MONDO_0005108
T191 20795-20797 Disease denotes OP http://purl.obolibrary.org/obo/MONDO_0015265
T192 20827-20836 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T193 20837-20847 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T194 21321-21323 Disease denotes OP http://purl.obolibrary.org/obo/MONDO_0015265
T195 21360-21362 Disease denotes OP http://purl.obolibrary.org/obo/MONDO_0015265
T196 21403-21409 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T197 21435-21441 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T198 21782-21802 Disease denotes organizing pneumonia http://purl.obolibrary.org/obo/MONDO_0015265|http://purl.obolibrary.org/obo/MONDO_0056821
T200 21793-21802 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T201 21866-21886 Disease denotes organizing pneumonia http://purl.obolibrary.org/obo/MONDO_0015265|http://purl.obolibrary.org/obo/MONDO_0056821
T203 21877-21886 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T204 21978-21986 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T205 22361-22365 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T206 22421-22428 Disease denotes COVID19 http://purl.obolibrary.org/obo/MONDO_0100096
T207 22437-22457 Disease denotes organizing pneumonia http://purl.obolibrary.org/obo/MONDO_0015265|http://purl.obolibrary.org/obo/MONDO_0056821
T209 22448-22457 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T210 22507-22509 Disease denotes OP http://purl.obolibrary.org/obo/MONDO_0015265
T211 22739-22763 Disease denotes cardiovascular disorders http://purl.obolibrary.org/obo/MONDO_0004995
T212 22807-22832 Disease denotes interstitial lung disease http://purl.obolibrary.org/obo/MONDO_0015925
T213 22820-22832 Disease denotes lung disease http://purl.obolibrary.org/obo/MONDO_0005275
T214 22919-22921 Disease denotes OP http://purl.obolibrary.org/obo/MONDO_0015265
T215 23003-23005 Disease denotes OP http://purl.obolibrary.org/obo/MONDO_0015265
T216 23284-23304 Disease denotes organizing pneumonia http://purl.obolibrary.org/obo/MONDO_0015265|http://purl.obolibrary.org/obo/MONDO_0056821
T218 23295-23304 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T219 23316-23337 Disease denotes nosocomial infections http://purl.obolibrary.org/obo/MONDO_0043544
T220 23634-23642 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T221 23645-23654 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T222 23700-23707 Disease denotes COVID19 http://purl.obolibrary.org/obo/MONDO_0100096
T223 23716-23736 Disease denotes organizing pneumonia http://purl.obolibrary.org/obo/MONDO_0015265|http://purl.obolibrary.org/obo/MONDO_0056821
T225 23727-23736 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T226 23836-23845 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T227 23893-23902 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T228 24015-24028 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T229 24134-24143 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T230 24144-24153 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T231 24215-24224 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T232 24233-24258 Disease denotes acute respiratory failure http://purl.obolibrary.org/obo/MONDO_0001208|http://purl.obolibrary.org/obo/MONDO_0021113
T234 24294-24302 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T235 24324-24337 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T236 24339-24343 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T237 24469-24473 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T238 24499-24503 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T239 24703-24712 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T240 24780-24784 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T241 24909-24917 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T242 24979-24987 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T243 25009-25022 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T244 25024-25028 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T245 25173-25177 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T246 25245-25267 Disease denotes invasive aspergillosis http://purl.obolibrary.org/obo/MONDO_0000240
T247 25254-25267 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T248 25309-25322 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T249 25353-25357 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T250 25410-25414 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T251 25429-25451 Disease denotes invasive aspergillosis http://purl.obolibrary.org/obo/MONDO_0000240
T252 25438-25451 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T253 25522-25526 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T254 25600-25613 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T255 25859-25863 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T256 26437-26445 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T257 26529-26537 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T258 26540-26549 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T259 26694-26702 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T260 26703-26707 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T261 26765-26773 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T262 26774-26778 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T263 26862-26864 Disease denotes OP http://purl.obolibrary.org/obo/MONDO_0015265
T264 26973-26986 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T265 27034-27038 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T266 27158-27166 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T267 27175-27179 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T268 27263-27270 Disease denotes COVID19 http://purl.obolibrary.org/obo/MONDO_0100096
T269 27385-27392 Disease denotes COVID19 http://purl.obolibrary.org/obo/MONDO_0100096
T270 27414-27427 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T15 193-199 http://purl.obolibrary.org/obo/CLO_0001302 denotes 3], [4
T16 306-312 http://www.ebi.ac.uk/efo/EFO_0000965 denotes thorax
T17 589-593 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T18 589-593 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T19 861-862 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T20 1523-1525 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T21 1803-1807 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T22 1803-1807 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T23 2356-2358 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T24 2444-2448 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T25 2444-2448 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T26 2697-2712 http://purl.obolibrary.org/obo/UBERON_0001555 denotes digestive tract
T27 3015-3022 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T28 3301-3308 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T29 3413-3414 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T30 3649-3650 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T31 3776-3780 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T32 3776-3780 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T33 3881-3886 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T34 3915-3919 http://purl.obolibrary.org/obo/UBERON_0002048 denotes Lung
T35 3915-3919 http://www.ebi.ac.uk/efo/EFO_0000934 denotes Lung
T36 4007-4008 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T37 4020-4021 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T38 4107-4112 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T39 4703-4708 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T40 4790-4794 http://purl.obolibrary.org/obo/UBERON_0003101 denotes male
T41 4790-4794 http://www.ebi.ac.uk/efo/EFO_0000970 denotes male
T42 4821-4822 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T43 4949-4950 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T44 5118-5120 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36
T45 5169-5171 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36
T46 5408-5409 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T47 5742-5743 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T48 5760-5770 http://purl.obolibrary.org/obo/OBI_0000245 denotes organizing
T49 5784-5789 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T50 5996-6001 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T51 6035-6040 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T52 6228-6234 http://purl.obolibrary.org/obo/CLO_0001929 denotes Berlin
T53 6795-6797 http://purl.obolibrary.org/obo/CLO_0004265 denotes HT
T54 6803-6805 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T55 6894-6899 http://purl.obolibrary.org/obo/CLO_0007487 denotes M, 83
T56 6900-6902 http://purl.obolibrary.org/obo/CLO_0004265 denotes HT
T57 6946-6948 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T58 6979-6981 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36
T59 6982-6984 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36
T60 7203-7209 http://purl.obolibrary.org/obo/UBERON_0002113 denotes kidney
T61 7203-7209 http://www.ebi.ac.uk/efo/EFO_0000927 denotes kidney
T62 7203-7209 http://www.ebi.ac.uk/efo/EFO_0000929 denotes kidney
T63 7260-7262 http://purl.obolibrary.org/obo/CLO_0004265 denotes HT
T64 7322-7327 http://www.ebi.ac.uk/efo/EFO_0000965 denotes Chest
T65 7561-7573 http://purl.obolibrary.org/obo/CL_0000057 denotes fibroblastic
T66 7620-7627 http://purl.obolibrary.org/obo/UBERON_0000055 denotes vessels
T67 7675-7679 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T68 7923-7927 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T69 8082-8091 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membranes
T70 8117-8129 http://purl.obolibrary.org/obo/CL_0000057 denotes fibroblastic
T71 8197-8201 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T72 8359-8371 http://purl.obolibrary.org/obo/CL_0000057 denotes fibroblastic
T73 8385-8386 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T74 8516-8520 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T75 8616-8628 http://purl.obolibrary.org/obo/CL_0000057 denotes fibroblastic
T76 8704-8708 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T77 8802-8814 http://purl.obolibrary.org/obo/CL_0000057 denotes fibroblastic
T78 8918-8922 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T79 9063-9075 http://purl.obolibrary.org/obo/CL_0000057 denotes fibroblastic
T80 9084-9086 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T81 9184-9188 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T82 9259-9269 http://purl.obolibrary.org/obo/OBI_0000245 denotes organizing
T83 9342-9352 http://purl.obolibrary.org/obo/OBI_0000245 denotes organizing
T84 9728-9733 http://www.ebi.ac.uk/efo/EFO_0000965 denotes Chest
T85 9805-9810 http://www.ebi.ac.uk/efo/EFO_0000965 denotes Chest
T86 9856-9857 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T87 9869-9874 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T88 9907-9908 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T89 9934-9939 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T90 10120-10122 http://purl.obolibrary.org/obo/CLO_0001236 denotes 2A
T91 10135-10140 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T92 10640-10650 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organizing
T93 10661-10662 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T94 10675-10679 http://purl.obolibrary.org/obo/UBERON_0003101 denotes male
T95 10675-10679 http://www.ebi.ac.uk/efo/EFO_0000970 denotes male
T96 10828-10833 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T97 11236-11241 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T98 11411-11412 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T99 11518-11522 http://purl.obolibrary.org/obo/UBERON_0000033 denotes head
T100 11518-11522 http://www.ebi.ac.uk/efo/EFO_0000964 denotes head
T101 11532-11537 http://purl.obolibrary.org/obo/UBERON_0000955 denotes brain
T102 11532-11537 http://www.ebi.ac.uk/efo/EFO_0000302 denotes brain
T103 11608-11617 http://purl.obolibrary.org/obo/UBERON_0001353 denotes posterior
T104 11627-11633 http://purl.obolibrary.org/obo/UBERON_0001637 denotes artery
T105 11627-11633 http://www.ebi.ac.uk/efo/EFO_0000814 denotes artery
T106 11757-11761 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T107 11757-11761 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T108 11795-11796 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T109 11832-11844 http://purl.obolibrary.org/obo/CL_0000057 denotes fibroblastic
T110 11896-11907 http://purl.obolibrary.org/obo/CL_0000235 denotes histiocytes
T111 11914-11916 http://purl.obolibrary.org/obo/CLO_0001236 denotes 2A
T112 11942-11946 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T113 11942-11946 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T114 12016-12025 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membranes
T115 12100-12113 http://purl.obolibrary.org/obo/UBERON_0001981 denotes blood vessels
T116 12100-12113 http://www.ebi.ac.uk/efo/EFO_0000817 denotes blood vessels
T117 12161-12171 http://purl.obolibrary.org/obo/OBI_0000245 denotes organizing
T118 12184-12185 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T119 12199-12205 http://purl.obolibrary.org/obo/UBERON_0000055 denotes vessel
T120 12271-12281 http://purl.obolibrary.org/obo/CL_0000066 denotes epithelial
T121 12309-12310 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T122 12422-12432 http://purl.obolibrary.org/obo/OBI_0000245 denotes organizing
T123 12463-12467 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T124 12463-12467 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T125 12478-12479 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T126 12504-12516 http://purl.obolibrary.org/obo/CL_0000057 denotes fibroblastic
T127 12541-12551 http://purl.obolibrary.org/obo/OBI_0000245 denotes organizing
T128 12574-12575 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T129 12736-12745 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membranes
T130 12799-12804 http://purl.obolibrary.org/obo/CLO_0002850 denotes E, 20
T131 12906-12912 http://purl.obolibrary.org/obo/UBERON_0000055 denotes vessel
T132 13040-13045 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T133 13125-13126 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T134 13139-13145 http://purl.obolibrary.org/obo/UBERON_0003100 denotes female
T135 13204-13205 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T136 13329-13334 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T137 13599-13601 http://purl.obolibrary.org/obo/CLO_0001236 denotes 2A
T138 13785-13790 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T139 13847-13857 http://purl.obolibrary.org/obo/UBERON_0002167 denotes right lung
T140 13934-13935 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T141 14210-14211 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T142 14372-14376 http://purl.obolibrary.org/obo/UBERON_0000033 denotes head
T143 14372-14376 http://www.ebi.ac.uk/efo/EFO_0000964 denotes head
T144 14584-14588 http://purl.obolibrary.org/obo/UBERON_0000033 denotes head
T145 14584-14588 http://www.ebi.ac.uk/efo/EFO_0000964 denotes head
T146 14677-14679 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T147 14737-14741 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T148 14737-14741 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T149 14803-14807 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T150 14803-14807 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T151 14966-14976 http://purl.obolibrary.org/obo/UBERON_0000483 denotes epithelium
T152 14982-14995 http://purl.obolibrary.org/obo/UBERON_0001981 denotes blood vessels
T153 14982-14995 http://www.ebi.ac.uk/efo/EFO_0000817 denotes blood vessels
T154 15156-15157 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T155 15170-15176 http://purl.obolibrary.org/obo/UBERON_0003100 denotes female
T156 15260-15265 http://www.ebi.ac.uk/efo/EFO_0000965 denotes Chest
T157 15639-15644 http://www.ebi.ac.uk/efo/EFO_0000965 denotes Chest
T158 15905-15909 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T159 15905-15909 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T160 16104-16105 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T161 16323-16327 http://purl.obolibrary.org/obo/UBERON_0000033 denotes head
T162 16323-16327 http://www.ebi.ac.uk/efo/EFO_0000964 denotes head
T163 16553-16557 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T164 16553-16557 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T165 16721-16722 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T166 16747-16759 http://purl.obolibrary.org/obo/CL_0000057 denotes fibroblastic
T167 16856-16865 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membranes
T168 17150-17160 http://purl.obolibrary.org/obo/OBI_0000245 denotes organizing
T169 17171-17172 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T170 17185-17189 http://purl.obolibrary.org/obo/UBERON_0003101 denotes male
T171 17185-17189 http://www.ebi.ac.uk/efo/EFO_0000970 denotes male
T172 17269-17270 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T173 17498-17499 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T174 17628-17633 http://www.ebi.ac.uk/efo/EFO_0000965 denotes Chest
T175 17988-17992 http://purl.obolibrary.org/obo/UBERON_0000033 denotes head
T176 17988-17992 http://www.ebi.ac.uk/efo/EFO_0000964 denotes head
T177 18281-18282 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T178 18294-18298 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T179 18294-18298 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T180 18385-18397 http://purl.obolibrary.org/obo/CL_0000057 denotes fibroblastic
T181 18433-18443 http://purl.obolibrary.org/obo/OBI_0000245 denotes organizing
T182 18464-18465 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T183 18601-18611 http://purl.obolibrary.org/obo/OBI_0000245 denotes organizing
T184 18654-18655 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T185 18787-18800 http://purl.obolibrary.org/obo/UBERON_0001981 denotes blood vessels
T186 18787-18800 http://www.ebi.ac.uk/efo/EFO_0000817 denotes blood vessels
T187 18846-18855 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membranes
T188 19025-19035 http://purl.obolibrary.org/obo/OBI_0000245 denotes organizing
T189 19326-19336 http://purl.obolibrary.org/obo/OBI_0000245 denotes organizing
T190 19520-19522 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T191 19549-19551 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T192 19654-19664 http://purl.obolibrary.org/obo/CLO_0001483 denotes 76% and 67
T193 19733-19743 http://purl.obolibrary.org/obo/OBI_0000245 denotes organizing
T194 19885-19895 http://purl.obolibrary.org/obo/OBI_0000245 denotes organizing
T195 19966-19970 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T196 19966-19970 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T197 20038-20047 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membranes
T198 20550-20552 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T199 20618-20619 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T200 20735-20739 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T201 20735-20739 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T202 20862-20864 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T203 21366-21367 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T204 21392-21402 http://purl.obolibrary.org/obo/CL_0000066 denotes epithelial
T205 21424-21434 http://purl.obolibrary.org/obo/CL_0000066 denotes epithelial
T206 21468-21474 http://purl.obolibrary.org/obo/UBERON_0001969 denotes plasma
T207 21496-21497 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T208 21567-21577 http://purl.obolibrary.org/obo/CL_0000057 denotes fibroblast
T209 21594-21611 http://purl.obolibrary.org/obo/UBERON_0002384 denotes connective tissue
T210 21594-21611 http://www.ebi.ac.uk/efo/EFO_0000952 denotes connective tissue
T211 21616-21626 http://purl.obolibrary.org/obo/CL_0000057 denotes fibroblast
T212 21627-21639 http://purl.obolibrary.org/obo/OBI_0000245 denotes organisation
T213 21727-21737 http://purl.obolibrary.org/obo/CL_0000057 denotes fibroblast
T214 21764-21765 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T215 21782-21792 http://purl.obolibrary.org/obo/OBI_0000245 denotes organizing
T216 21866-21876 http://purl.obolibrary.org/obo/OBI_0000245 denotes organizing
T217 21950-21951 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T218 22015-22020 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T219 22055-22063 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T220 22074-22075 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T221 22189-22198 http://purl.obolibrary.org/obo/CLO_0001658 denotes activated
T222 22214-22226 http://purl.obolibrary.org/obo/CL_0000057 denotes Fibroblastic
T223 22258-22259 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T224 22391-22392 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T225 22437-22447 http://purl.obolibrary.org/obo/OBI_0000245 denotes organizing
T226 22820-22824 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T227 22820-22824 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T228 23022-23027 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T229 23068-23069 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T230 23284-23294 http://purl.obolibrary.org/obo/OBI_0000245 denotes organizing
T231 23672-23673 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T232 23716-23726 http://purl.obolibrary.org/obo/OBI_0000245 denotes organizing
T233 23904-23905 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T234 24098-24099 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T235 24415-24416 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T236 24516-24520 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T237 24516-24520 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T238 24661-24664 http://purl.obolibrary.org/obo/PR_000001004 denotes CD4
T239 24673-24676 http://purl.obolibrary.org/obo/CLO_0053438 denotes CD8
T240 24679-24686 http://purl.obolibrary.org/obo/CL_0000084 denotes T cells
T241 24688-24690 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T242 24720-24724 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T243 24720-24724 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T244 24754-24755 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T245 24775-24777 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T246 25208-25212 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T247 25208-25212 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T248 26104-26105 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T249 26274-26278 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T250 26274-26278 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T251 26292-26293 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T252 26878-26879 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T253 26918-26923 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T2 1645-1655 Chemical denotes antifungal http://purl.obolibrary.org/obo/CHEBI_35718
T3 2736-2747 Chemical denotes chloroquine http://purl.obolibrary.org/obo/CHEBI_3638
T4 2923-2930 Chemical denotes heparin http://purl.obolibrary.org/obo/CHEBI_28304
T5 2953-2955 Chemical denotes IE http://purl.obolibrary.org/obo/CHEBI_137259
T6 3213-3226 Chemical denotes galactomannan http://purl.obolibrary.org/obo/CHEBI_27680
T7 3282-3295 Chemical denotes galactomannan http://purl.obolibrary.org/obo/CHEBI_27680
T8 3297-3299 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T10 3338-3341 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T11 3370-3377 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132
T12 3651-3653 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T14 3669-3672 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T15 3728-3731 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T16 4238-4251 Chemical denotes periodic acid http://purl.obolibrary.org/obo/CHEBI_29149
T17 4247-4251 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T18 4274-4277 Chemical denotes PAS http://purl.obolibrary.org/obo/CHEBI_27565
T19 4790-4794 Chemical denotes male http://purl.obolibrary.org/obo/CHEBI_30780
T20 4967-4979 Chemical denotes prednisolone http://purl.obolibrary.org/obo/CHEBI_8378
T21 5419-5421 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T23 5425-5428 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T24 5467-5477 Chemical denotes antifungal http://purl.obolibrary.org/obo/CHEBI_35718
T25 5491-5503 Chemical denotes voriconazole http://purl.obolibrary.org/obo/CHEBI_10023
T26 5508-5521 Chemical denotes anidulafungin http://purl.obolibrary.org/obo/CHEBI_55346
T27 5569-5584 Chemical denotes corticosteroids http://purl.obolibrary.org/obo/CHEBI_50858
T28 5592-5604 Chemical denotes prednisolone http://purl.obolibrary.org/obo/CHEBI_8378
T29 5646-5660 Chemical denotes corticosteroid http://purl.obolibrary.org/obo/CHEBI_50858
T30 5702-5709 Chemical denotes steroid http://purl.obolibrary.org/obo/CHEBI_35341
T31 5931-5934 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T32 5942-5949 Chemical denotes steroid http://purl.obolibrary.org/obo/CHEBI_35341
T33 6279-6281 Chemical denotes PE http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762
T36 6282-6285 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T37 6292-6294 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T39 6343-6354 Chemical denotes Chloroquine http://purl.obolibrary.org/obo/CHEBI_3638
T40 6410-6422 Chemical denotes prednisolone http://purl.obolibrary.org/obo/CHEBI_8378
T41 6467-6469 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T43 6524-6526 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T45 6625-6627 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T47 6707-6709 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T49 6825-6827 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T51 6904-6906 Chemical denotes DM http://purl.obolibrary.org/obo/CHEBI_141426
T52 6928-6930 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T54 7000-7002 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T56 7110-7113 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T57 7218-7220 Chemical denotes DM http://purl.obolibrary.org/obo/CHEBI_141426
T58 7241-7243 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T60 7245-7258 Chemical denotes galactomannan http://purl.obolibrary.org/obo/CHEBI_27680
T61 7278-7280 Chemical denotes PE http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762
T64 7531-7533 Chemical denotes PE http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762
T67 7814-7816 Chemical denotes PE http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762
T70 8046-8048 Chemical denotes PE http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762
T73 8341-8343 Chemical denotes PE http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762
T76 9033-9035 Chemical denotes PE http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762
T79 9364-9366 Chemical denotes PE http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762
T82 10675-10679 Chemical denotes male http://purl.obolibrary.org/obo/CHEBI_30780
T83 10759-10761 Chemical denotes ED http://purl.obolibrary.org/obo/CHEBI_73503
T84 12360-12363 Chemical denotes PAS http://purl.obolibrary.org/obo/CHEBI_27565
T85 13711-13723 Chemical denotes prednisolone http://purl.obolibrary.org/obo/CHEBI_8378
T86 14045-14048 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T87 14074-14076 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T89 14165-14179 Chemical denotes glucocorticoid http://purl.obolibrary.org/obo/CHEBI_24261
T90 14188-14191 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T91 14212-14214 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T93 14293-14305 Chemical denotes prednisolone http://purl.obolibrary.org/obo/CHEBI_8378
T94 14337-14347 Chemical denotes antifungal http://purl.obolibrary.org/obo/CHEBI_35718
T95 15020-15023 Chemical denotes PAS http://purl.obolibrary.org/obo/CHEBI_27565
T96 15510-15513 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T97 16026-16038 Chemical denotes prednisolone http://purl.obolibrary.org/obo/CHEBI_8378
T98 16068-16080 Chemical denotes prednisolone http://purl.obolibrary.org/obo/CHEBI_8378
T99 16115-16117 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T101 16145-16148 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T102 16988-16991 Chemical denotes PAS http://purl.obolibrary.org/obo/CHEBI_27565
T103 17185-17189 Chemical denotes male http://purl.obolibrary.org/obo/CHEBI_30780
T104 17263-17265 Chemical denotes ED http://purl.obolibrary.org/obo/CHEBI_73503
T105 17467-17470 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T106 17509-17511 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T108 17964-17972 Chemical denotes sedative http://purl.obolibrary.org/obo/CHEBI_35717
T109 18907-18910 Chemical denotes PAS http://purl.obolibrary.org/obo/CHEBI_27565
T110 20779-20783 Chemical denotes drug http://purl.obolibrary.org/obo/CHEBI_23888
T111 21159-21164 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T112 21475-21483 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T113 22012-22014 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T114 22108-22119 Chemical denotes angiotensin http://purl.obolibrary.org/obo/CHEBI_48433
T115 22128-22131 Chemical denotes RAS http://purl.obolibrary.org/obo/CHEBI_63620
T116 22176-22179 Chemical denotes RAS http://purl.obolibrary.org/obo/CHEBI_63620
T117 22199-22202 Chemical denotes RAS http://purl.obolibrary.org/obo/CHEBI_63620
T118 22366-22368 Chemical denotes CO http://purl.obolibrary.org/obo/CHEBI_17245
T119 22580-22591 Chemical denotes chloroquine http://purl.obolibrary.org/obo/CHEBI_3638
T120 22704-22715 Chemical denotes chloroquine http://purl.obolibrary.org/obo/CHEBI_3638
T121 22794-22798 Chemical denotes drug http://purl.obolibrary.org/obo/CHEBI_23888
T122 22980-22990 Chemical denotes antifungal http://purl.obolibrary.org/obo/CHEBI_35718
T123 23563-23571 Chemical denotes steroids http://purl.obolibrary.org/obo/CHEBI_35341
T124 23949-23956 Chemical denotes steroid http://purl.obolibrary.org/obo/CHEBI_35341
T125 25056-25059 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T126 25066-25079 Chemical denotes galactomannan http://purl.obolibrary.org/obo/CHEBI_27680
T127 25464-25474 Chemical denotes antifungal http://purl.obolibrary.org/obo/CHEBI_35718
T128 25649-25659 Chemical denotes antifungal http://purl.obolibrary.org/obo/CHEBI_35718
T129 25907-25917 Chemical denotes antifungal http://purl.obolibrary.org/obo/CHEBI_35718
T130 25964-25971 Chemical denotes steroid http://purl.obolibrary.org/obo/CHEBI_35341
T131 27132-27146 Chemical denotes corticosteroid http://purl.obolibrary.org/obo/CHEBI_50858

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T7 160-179 Phenotype denotes respiratory failure http://purl.obolibrary.org/obo/HP_0002878
T8 349-369 Phenotype denotes respiratory distress http://purl.obolibrary.org/obo/HP_0002098
T9 910-924 Phenotype denotes thromboembolic http://purl.obolibrary.org/obo/HP_0001907
T10 1005-1020 Phenotype denotes thromboembolism http://purl.obolibrary.org/obo/HP_0001907
T11 1466-1489 Phenotype denotes diffuse alveolar damage http://purl.obolibrary.org/obo/HP_0033006
T12 2328-2347 Phenotype denotes respiratory failure http://purl.obolibrary.org/obo/HP_0002878
T13 5248-5266 Phenotype denotes pulmonary embolism http://purl.obolibrary.org/obo/HP_0002204
T14 5771-5780 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T15 7079-7099 Phenotype denotes respiratory distress http://purl.obolibrary.org/obo/HP_0002098
T16 7222-7239 Phenotype denotes diabetes mellitus http://purl.obolibrary.org/obo/HP_0000819
T17 7264-7276 Phenotype denotes hypertension http://purl.obolibrary.org/obo/HP_0000822
T18 7281-7299 Phenotype denotes pulmonary embolism http://purl.obolibrary.org/obo/HP_0002204
T19 7771-7785 Phenotype denotes bronchiectasis http://purl.obolibrary.org/obo/HP_0002110
T20 8017-8031 Phenotype denotes bronchiectasis http://purl.obolibrary.org/obo/HP_0002110
T21 8298-8312 Phenotype denotes bronchiectasis http://purl.obolibrary.org/obo/HP_0002110
T22 9004-9018 Phenotype denotes bronchiectasis http://purl.obolibrary.org/obo/HP_0002110
T23 9270-9279 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T24 9285-9308 Phenotype denotes diffuse alveolar damage http://purl.obolibrary.org/obo/HP_0033006
T25 9353-9362 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T26 9367-9385 Phenotype denotes pulmonary embolism http://purl.obolibrary.org/obo/HP_0002204
T27 10185-10199 Phenotype denotes bronchiectasis http://purl.obolibrary.org/obo/HP_0002110
T28 10331-10354 Phenotype denotes traction bronchiectasis http://purl.obolibrary.org/obo/HP_0032969
T29 10609-10623 Phenotype denotes bronchiectasis http://purl.obolibrary.org/obo/HP_0002110
T30 10651-10660 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T31 10782-10798 Phenotype denotes general weakness http://purl.obolibrary.org/obo/HP_0003324
T32 10800-10805 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T33 10810-10818 Phenotype denotes dyspnoea http://purl.obolibrary.org/obo/HP_0002094
T34 11124-11143 Phenotype denotes acute renal failure http://purl.obolibrary.org/obo/HP_0001919
T35 11532-11546 Phenotype denotes brain ischemia http://purl.obolibrary.org/obo/HP_0002637
T36 12433-12442 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T37 12552-12561 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T38 12771-12794 Phenotype denotes diffuse alveolar damage http://purl.obolibrary.org/obo/HP_0033006
T39 13281-13290 Phenotype denotes diarrhoea http://purl.obolibrary.org/obo/HP_0002014
T40 13295-13314 Phenotype denotes shortness of breath http://purl.obolibrary.org/obo/HP_0002098
T41 13545-13559 Phenotype denotes bronchiectasis http://purl.obolibrary.org/obo/HP_0002110
T42 14008-14031 Phenotype denotes traction bronchiectasis http://purl.obolibrary.org/obo/HP_0032969
T43 14547-14567 Phenotype denotes cerebral haemorrhage http://purl.obolibrary.org/obo/HP_0001342
T44 15097-15115 Phenotype denotes pulmonary fibrosis http://purl.obolibrary.org/obo/HP_0002206
T45 15132-15155 Phenotype denotes Diffuse alveolar damage http://purl.obolibrary.org/obo/HP_0033006
T46 15249-15258 Phenotype denotes hypoxemia http://purl.obolibrary.org/obo/HP_0012418
T47 17090-17113 Phenotype denotes diffuse alveolar damage http://purl.obolibrary.org/obo/HP_0033006
T48 17161-17170 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T49 17295-17300 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T50 17305-17313 Phenotype denotes dyspnoea http://purl.obolibrary.org/obo/HP_0002094
T51 17883-17897 Phenotype denotes bronchiectasis http://purl.obolibrary.org/obo/HP_0002110
T52 18444-18453 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T53 18612-18621 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T54 19036-19045 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T55 19337-19346 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T56 19744-19753 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T57 21793-21802 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T58 21877-21886 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T59 22448-22457 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T60 22807-22832 Phenotype denotes interstitial lung disease http://purl.obolibrary.org/obo/HP_0006530
T61 23295-23304 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T62 23645-23654 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T63 23727-23736 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T64 23996-24028 Phenotype denotes invasive pulmonary aspergillosis http://purl.obolibrary.org/obo/HP_0020103
T65 24144-24153 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T66 24239-24258 Phenotype denotes respiratory failure http://purl.obolibrary.org/obo/HP_0002878
T67 24601-24615 Phenotype denotes cytokine storm http://purl.obolibrary.org/obo/HP_0033041
T68 25290-25322 Phenotype denotes invasive pulmonary aspergillosis http://purl.obolibrary.org/obo/HP_0020103
T69 25582-25587 Phenotype denotes shock http://purl.obolibrary.org/obo/HP_0031273

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 2539-2560 http://purl.obolibrary.org/obo/GO_0001171 denotes reverse transcription
T2 2547-2560 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T3 12971-12986 http://purl.obolibrary.org/obo/GO_0016032 denotes viral infection
T4 14249-14255 http://purl.obolibrary.org/obo/GO_0040007 denotes growth
T5 20758-20774 http://purl.obolibrary.org/obo/GO_0016032 denotes viral infections
T6 21305-21317 http://purl.obolibrary.org/obo/GO_0009405 denotes pathogenesis
T7 21696-21702 http://purl.obolibrary.org/obo/GO_0040007 denotes growth
T8 21738-21744 http://purl.obolibrary.org/obo/GO_0040007 denotes growth
T9 22227-22233 http://purl.obolibrary.org/obo/GO_0040007 denotes Growth
T10 22405-22417 http://purl.obolibrary.org/obo/GO_0009405 denotes pathogenesis
T11 24579-24596 http://purl.obolibrary.org/obo/GO_0019079 denotes viral replication
T12 24579-24596 http://purl.obolibrary.org/obo/GO_0019058 denotes viral replication
T13 26513-26525 http://purl.obolibrary.org/obo/GO_0009405 denotes pathogenesis

LitCovid-PD-GlycoEpitope

Id Subject Object Predicate Lexical cue glyco_epitope_db_id
T2 3213-3226 GlycoEpitope denotes galactomannan http://www.glycoepitope.jp/epitopes/EP0510
T3 3282-3295 GlycoEpitope denotes galactomannan http://www.glycoepitope.jp/epitopes/EP0510
T4 3297-3299 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T5 3651-3653 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T6 5419-5421 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T7 6292-6294 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T8 6467-6469 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T9 6524-6526 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T10 6625-6627 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T11 6707-6709 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T12 6825-6827 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T13 6928-6930 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T14 7000-7002 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T15 7241-7243 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T16 7245-7258 GlycoEpitope denotes galactomannan http://www.glycoepitope.jp/epitopes/EP0510
T17 14074-14076 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T18 14212-14214 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T19 16115-16117 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T20 17509-17511 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T21 25066-25079 GlycoEpitope denotes galactomannan http://www.glycoepitope.jp/epitopes/EP0510

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T23 0-15 Sentence denotes 1 Introduction
T24 16-386 Sentence denotes Up to 20% of hospitalized coronavirus disease 2019 (COVID-19) patients are admitted to the intensive care unit (ICU) because of acute hypoxemic respiratory failure. [[1], [2], [3], [4]] These patients usually present with bilateral patchy ground glass opacities on computed tomography (CT) thorax fulfilling the definition for acute respiratory distress syndrome (ARDS).
T25 387-821 Sentence denotes Often an atypical high compliance phenotype (L-type) is observed during mechanical ventilation in COVID-19 patients in contrast to mechanical ventilation characteristics typically seen in ARDS with low lung compliance phenotype (H -type). [5,6] During ICU stay the radiologic presentation of bilateral patchy ground glass opacities as present at admission often progress to consolidations with or without fibrotic characteristics [7].
T26 822-969 Sentence denotes Two earlier observed features may play a critical role in the severity of this disease: thromboembolic complications and early onset aspergillosis.
T27 970-1083 Sentence denotes The cumulative incidence of venous thromboembolism reported was 49% in COVID-19 patients admitted to the ICU [8].
T28 1084-1179 Sentence denotes Presumed pulmonary aspergillosis may be present in as much as 19% of ICU COVID-19 patients [9].
T29 1180-1398 Sentence denotes Since the physiology in COVID-19 related ARDS as well as its complications seems to differ from “typical’ ARDS, an insight into the pulmonary tissue pathology of this new infectious disease is of the utmost importance.
T30 1399-1534 Sentence denotes The scarcely available pathological data in COVID-19 patients show diffuse alveolar damage, closely related to ARDS [[10], [11], [12]].
T31 1535-1770 Sentence denotes The clinical relevance of COVID-19-associated pulmonary aspergillosis (CAPA) as well as survival benefit with antifungal treatment and associated mortality are under debate since histopathological evidence of CAPA is not obtained [13].
T32 1771-1892 Sentence denotes We examined postmortem obtained lung tissue in seven patients, with COVID related ARDS who needed mechanical ventilation.
T33 1893-2016 Sentence denotes The histopathologic findings, together with clinical features, radiological and microbiological findings are reported here.
T34 2017-2138 Sentence denotes This report may contribute to new insights in the pathogeneses of COVID-19 as well as suggestions for treatment strategy.
T35 2140-2150 Sentence denotes 2 Methods
T36 2152-2184 Sentence denotes 2.1 Study population and design
T37 2185-2497 Sentence denotes All patients with laboratory confirmed severe acute respiratory syndrome coronavirus 2 (SARS-COV-2) admitted to the ICU due to acute hypoxemic respiratory failure between 22 March 2020 and 30 April 2020 and with available postmortem needle core biopsy of the lung were eligible for inclusion in this case series.
T38 2498-2633 Sentence denotes SARS-CoV-2 was diagnosed using real-time reverse transcription polymerase chain reaction (RT-PCR) on sputum and/or bronchial aspirates.
T39 2634-2972 Sentence denotes Routine ICU management included, among other things, selective digestive tract decontamination (SDD), chloroquine until the Dutch National Institute for Public Health and Environment advised against its use at the end of March 2020, and high dose anticoagulation with low-molecular-weight heparin (LMWH) (nadroparin 87 IE/kg twice daily).
T40 2973-3111 Sentence denotes Bronchoscopy, with or without lavage, and testing for pulmonary aspergillosis were performed at the discretion of the attending physician.
T41 3112-3277 Sentence denotes Pulmonary aspergillosis was diagnosed using clinical, radiological and mycological data and included galactomannan (serum and sputum), tracheal or bronchial culture.
T42 3278-3402 Sentence denotes For galactomannan (GM) testing from bronchoalveolar lavage (BAL) fluid Platelia Aspergillis antigen ELISA (Biorad) was used.
T43 3403-3576 Sentence denotes Recently, a case definition for influenza associated pulmonary aspergillosis (IAPA) was proposed by an expert panel, which could be used to classify patients with CAPA [14].
T44 3577-3732 Sentence denotes Diagnostic criteria include proven infection with clinical symptoms and a GM index of ≥1 on BAL or of ≥0ꞏ5 on serum; or Aspergillus spp. cultured from BAL.
T45 3734-3780 Sentence denotes 2.2 Postmortem needle core biopsy of the lung
T46 3781-3914 Sentence denotes With permission from the patients' families, postmortem core needle biopsies were performed on both lungs within an hour after death.
T47 3915-4019 Sentence denotes Lung biopsies were ultrasound and CT guided and combined with surface anatomic landmarks as a reference.
T48 4020-4113 Sentence denotes A minimum of three histologic 14 gauge true cut needle biopsies were performed in both lungs.
T49 4114-4204 Sentence denotes Biopsy specimens were fixed in formalin, embedded in paraffin, and cut into 3 μm sections.
T50 4205-4333 Sentence denotes Hematoxylin and eosin (H&E), and periodic acid–Schiff with diastase (PAS-D) stains were applied according to routine procedures.
T51 4335-4360 Sentence denotes 2.3 Statistical analysis
T52 4361-4430 Sentence denotes Descriptive statistics were used to describe patient characteristics.
T53 4431-4487 Sentence denotes For statistical analysis IBM SPSS version 25.0 was used.
T54 4488-4579 Sentence denotes The local Medical Ethics Committee (Medical Research Committees United) approved the study.
T55 4581-4591 Sentence denotes 3 Results
T56 4593-4615 Sentence denotes 3.1 Clinical features
T57 4616-4709 Sentence denotes During the study period, seven patients underwent postmortem needle core biopsy of the lungs.
T58 4710-4795 Sentence denotes Patients age ranged from 58 to 83 years (median 74 year) and five patients were male.
T59 4796-4862 Sentence denotes None of the patients had a history of (chronic) pulmonary disease.
T60 4863-4980 Sentence denotes One patient used immunosuppressive medication before hospital admission, in this case a short course of prednisolone.
T61 4981-5061 Sentence denotes Median time from hospital to ICU admission was 0 days (interquartile range 0–4).
T62 5062-5126 Sentence denotes Time from hospital admission to death ranged from 12 to 36 days.
T63 5127-5189 Sentence denotes Patients deceased at median of 21(range 9–36) ventilated days.
T64 5190-5267 Sentence denotes In five out of seven patients ICU stay was complicated by pulmonary embolism.
T65 5268-5435 Sentence denotes Adopting the proposed definition of CAPA by van Arkel et al. [9], six patients were classified as having probable CAPA (Table 1 ), based on a positive GM on BAL fluid.
T66 5436-5534 Sentence denotes In those patients, combination antifungal therapy with voriconazole and anidulafungin was started.
T67 5535-5686 Sentence denotes Three out of six patients were on corticosteroids (60 mg prednisolone daily) at the time of CAPA diagnosis and corticosteroid treatment was terminated.
T68 5687-5829 Sentence denotes Indication for steroid treatment in these patients was a suspicion of an organizing pneumonia on chest CT or signs of progression to fibrosis.
T69 5830-5972 Sentence denotes Nosocomial infections including signs for pulmonary aspergillosis were excluded by bronchoscopy with BAL before steroid treatment was started.
T70 5973-6094 Sentence denotes Radiologic findings of chest CT and histologic results of the lungs biopsies of all seven patients are shown in Table 2 .
T71 6095-6147 Sentence denotes Table 1 Patient characteristics and clinical course.
T72 6148-6432 Sentence denotes Case Sex, age (years) Medical history Total hospital days Total ventilated days Berlin classification of ARDS Compliance phenotype PE BAL fluid GM and culture (days post hospital admission) CAPA Chloroquine Prednisolone use during hospital admission Duration of prednisolone treatment
T73 6433-6488 Sentence denotes 1 M, 77 None 12 10 Severe Low Yes GM negative No Yes No
T74 6489-6590 Sentence denotes 2 F, 73 None 20 16 Severe High Yes GM index 4.4 (day 19) Aspergillus fumigatus Probable No Yes 8 days
T75 6591-6670 Sentence denotes 3 F, 58 None 30 26 Severe Low Yes GM index 3.4 (day 20) Probable Yes Yes 5 days
T76 6671-6786 Sentence denotes 4 M, 68 None 21 21 Moderate Low Yes GM index 5.7 (day 1) Aspergillus fumigatus Enterococcus faecium Probable Yes No
T77 6787-6891 Sentence denotes 5 M, 78 HT, CKI 22 21 Moderate Low No GM index 4.3 (day 20) Enterococcus faecium Probable Yes Yes 2 days
T78 6892-6965 Sentence denotes 6 M, 83 HT, DM 13 9 Moderate Low No GM index 1.7 (day 11) Probable Yes No
T79 6966-7067 Sentence denotes 7 M, 74 None 36 36 Severe Low Yes GM index 4.4 (day 24) Enterococcus faecalis Probable Yes Yes 4 days
T80 7068-7300 Sentence denotes ARDS acute respiratory distress syndrome; BAL broncho-alveolar lavage; CAPA, COVID-19 associated pulmonary aspergillosis; CKI, chronic kidney injury; DM, diabetes mellitus; GM, galactomannan; HT, hypertension; PE pulmonary embolism.
T81 7301-7362 Sentence denotes Table 2 Radiological Chest CT scan and histological findings.
T82 7363-7433 Sentence denotes Case Radiological findings Histological findings description Diagnosis
T83 7434-7724 Sentence denotes 1 GGO, crazy paving, non-dependent consolidation, subpleural sparing, segmental and subsegmental PE Intra-alveolar fibromyxoid/fibroblastic bodies (25%), micro-thrombi, thrombi in lager vessels, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae OP
T84 7725-7978 Sentence denotes 2 GGO, crazy paving, resolving consolidation, bronchiectasis, segmental and subsegmental PE Extensive fibrosis with destruction of alveolar structures, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae Fibrosis
T85 7979-8247 Sentence denotes 3 GGO, large dependent consolidation, bronchiectasis, subsegmental PE Inflammatory infiltrate, hyaline membranes, sporadic intra-alveolar fibroblastic plug, micro-thrombi, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae DAD
T86 8248-8567 Sentence denotes 4 GGO, crazy paving, non-dependent consolidation, bronchiectasis, segmental and subsegmental PE Intra-alveolar fibroblastic tissue, with a diffuse component of fibrinous exudate, widening of alveolar septa, micro-thrombi, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae AFOP
T87 8568-8753 Sentence denotes 5 GGO, consolidation Intra-alveolar fibromyxoid/fibroblastic bodies (32%), micro-thrombi, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae OP
T88 8754-8967 Sentence denotes 6 GGO, consolidation Intra-alveolar fibromyxoid/fibroblastic bodies (80%), widening of alveolar septa, micro-thrombi, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae OP
T89 8968-9233 Sentence denotes 7 GGO, crazy paving, consolidation, bronchiectasis, subsegmental PE Intra-alveolar fibromyxoid/fibroblastic bodies (27%), mild widening of alveolar septa, micro-thrombi, hyperplasia with atypia, multinucleated giant cell, intranuclear inclusion bodies, no hyphae OP
T90 9234-9386 Sentence denotes AFOP acute fibrinous and organizing pneumonia, DAD diffuse alveolar damage, GGO, ground glass opacities; OP organizing pneumonia; PE pulmonary embolism.
T91 9387-9550 Sentence denotes To further investigate histopathologic findings we now present the detailed clinical course of four patients with four different histopathological characteristics.
T92 9551-9727 Sentence denotes Because of complexity and importance of the distinct patterns and their relation with radiologic findings and treatment, we preferred to discuss them separately in more detail.
T93 9728-9797 Sentence denotes Chest CT imaging of the four discussed patients are shown in Fig. 1 .
T94 9798-9832 Sentence denotes Fig. 1 Chest CT scans of case 1–4.
T95 9833-9971 Sentence denotes For each patient image A represents chest CT at hospital admission, image B follow up CT-scan (note: chest CT of case 4 was not repeated).
T96 9972-10119 Sentence denotes 1A: bilateral areas of GGO, patchy subpleural non-dependant consolidations 1B: progression of dens subpleural consolidations with air-bronchograms.
T97 10120-10230 Sentence denotes 2A GGO in both lungs, combined with crazy-paving pattern, subtle bronchiectasis are present in affected areas.
T98 10231-10355 Sentence denotes 2B GGO persisted, without progression to consolidations, more pronounced fibrotic reticulation with traction bronchiectasis.
T99 10356-10425 Sentence denotes 3A diffuse bilateral GGO with large gravity dependant consolidations.
T100 10426-10524 Sentence denotes 3B persistent GGO and consolidation, newly formed cyst-like lesions in middle and ventral regions.
T101 10525-10624 Sentence denotes 4A bilateral areas of GGO, patchy non-dependant peripheral consolidations with mild bronchiectasis.
T102 10626-10660 Sentence denotes 3.2 Case 1 – Organizing pneumonia
T103 10661-10819 Sentence denotes A 77-year old male without significant medical history was evaluated in our emergency department (ED) with complaints of general weakness, fever and dyspnoea.
T104 10820-11034 Sentence denotes Initial chest CT showed extensive bilateral areas of ground-glass opacity with both central and peripheral distribution, patchy subpleural non-dependant consolidations and areas with subpleural sparing (Fig. 1-1A).
T105 11035-11194 Sentence denotes Soon after admission patient was in need of mechanical ventilatory support and developed acute renal failure for which renal replacement therapy was initiated.
T106 11195-11410 Sentence denotes After six days of mechanical ventilation chest CT-angiography showed pulmonary emboli along with new areas of ground-glass opacity and progression of dens subpleural consolidations with air-bronchograms (Fig. 1-1B).
T107 11411-11469 Sentence denotes A nosocomial infection was ruled out by bronchial culture.
T108 11470-11634 Sentence denotes Patient's neurologic status deteriorated and CT head revealed brain ischemia due to infarction of the area supplied by the left and right posterior cerebral artery.
T109 11635-11676 Sentence denotes The patient died 12 days after admission.
T110 11677-11785 Sentence denotes Postmortem pathologic examination revealed that the overall architecture of the lung tissue remained intact.
T111 11786-11918 Sentence denotes However, a prominent amount of fibromyxoid or fibroblastic bodies was present in the alveoli with surrounding histiocytes (Fig. 2A .
T112 11919-11992 Sentence denotes The extent of involved lung tissue was estimated at around 25% (Table 2).
T113 11993-12077 Sentence denotes No remnants of hyaline membranes or prominent alveolar fibrinous exudate were found.
T114 12078-12216 Sentence denotes Microthrombi in small blood vessels of the alveolar septa were seen, as well as an organizing thrombus in a larger sized vessel (Fig. 2E).
T115 12217-12331 Sentence denotes The histologic findings in this case point towards an epithelial, and vascular phenotype of a SARS-CoV2 infection.
T116 12332-12372 Sentence denotes No fungi were present in de PAS-D stain.
T117 12373-12443 Sentence denotes This histologic pattern is characteristic for an organizing pneumonia.
T118 12444-12477 Sentence denotes Fig. 2 Microscopic lung findings.
T119 12478-13100 Sentence denotes A, case 1: intra-alveolar fibroblastic bodies, consistent with organizing pneumonia, (H&E, 10×) B, case 2: loss of alveolar architecture with extensive fibrosis (H&E; 10×) C, case 3: inflammatory infiltrate with neutrophils and lymphocytes, note the hyaline membranes (arrows), suggestive for diffuse alveolar damage. (H&E, 20×) D, case 4: prominent fibrinous exudate in alveoli as seen in AFOP (H&E; 10×) E: thrombus in larger vessel (H&E, 5×) F: cytopathogenic changes in pneumocytes due to viral infection seen in all cases: hyperplasia, multinucleated giant cells (asterisks), intranuclear inclusion bodies (H&E, 40×).
T120 13102-13124 Sentence denotes 3.3 Case 2 – Fibrosis
T121 13125-13222 Sentence denotes A 73-year old female was transferred to our ICU due to shortage of ICU beds in a nearby hospital.
T122 13223-13315 Sentence denotes Prior to ICU admission, she was healthy but complained of diarrhoea and shortness of breath.
T123 13316-13472 Sentence denotes Non-contrast chest CT at initial hospital admission showed multiple bilateral areas of ground-glass opacity along the bronchovascular bundles and periphery.
T124 13473-13537 Sentence denotes There were some small areas of consolidation in the upper lobes.
T125 13538-13603 Sentence denotes Subtle bronchiectasis were present in affected areas (Fig. 1-2A).
T126 13604-13692 Sentence denotes Her respiratory condition required mechanical ventilation in prone position due to ARDS.
T127 13693-13777 Sentence denotes After seven days, prednisolone treatment was started because of lack of improvement.
T128 13778-13858 Sentence denotes Repeat chest CT-angiography showed segmental pulmonary emboli in the right lung.
T129 13859-13933 Sentence denotes Ground-glass opacities persisted while the consolidations had disappeared.
T130 13934-14044 Sentence denotes A reticular pattern combined with GGO was more pronounced with increasing traction bronchiectasis (Fig. 1-2B).
T131 14045-14136 Sentence denotes BAL was performed twice, but GM and culture showed no signs of additional fungal infection.
T132 14137-14225 Sentence denotes After one week of high dose glucocorticoid therapy BAL was repeated with a GM index 4.4.
T133 14226-14281 Sentence denotes Fungal cultures showed growth of Aspergillus fumigatus.
T134 14282-14368 Sentence denotes Therefore, prednisolone treatment was discontinued and antifungal treatment initiated.
T135 14369-14500 Sentence denotes CT head was performed because of the development of an epileptic insult and showed small foci of haemorrhage in both frontal lobes.
T136 14501-14618 Sentence denotes Neurologic condition worsened and progressive cerebral haemorrhage on follow up CT head was seen with poor prognosis.
T137 14619-14709 Sentence denotes Palliative treatment was started and the patient deceased 27 days after onset of symptoms.
T138 14710-14821 Sentence denotes Microscopic examination of lung tissue of this case showed an almost complete loss of normal lung architecture.
T139 14822-14907 Sentence denotes Alveolar structures were unrecognizable and replaced by extensive fibrosis (Fig. 2B).
T140 14908-15012 Sentence denotes What remained were several foci of pneumocytes, bronchial epithelium, and blood vessels without thrombi.
T141 15013-15055 Sentence denotes In the PAS-D stain no fungi were observed.
T142 15056-15116 Sentence denotes The prominent pattern in this patient is pulmonary fibrosis.
T143 15118-15155 Sentence denotes 3.4 Case 3 – Diffuse alveolar damage
T144 15156-15259 Sentence denotes A 58-year old female was admitted to the ICU and needed mechanical ventilation due to severe hypoxemia.
T145 15260-15467 Sentence denotes Chest CT-angiography showed dubious unilateral sub-segmental pulmonary emboli and diffuse bilateral ground-glass opacities with anteroposterior gradient along with large dependant consolidations (Fig. 1-3A).
T146 15468-15638 Sentence denotes On the 8th day of mechanical ventilation, BAL was performed and CT-scan was repeated because of deteriorating pulmonary condition with increasing inflammatory parameters.
T147 15639-15761 Sentence denotes Chest CT-angiography showed bilateral sub-segmental pulmonary emboli, persistent ground-glass opacities and consolidation.
T148 15762-15929 Sentence denotes Newly formed coarse cyst-like lesions in the middle and ventral regions (non-dependant regions) were noted, probably due to ventilator induced lung injury (Fig. 1-3B).
T149 15930-16051 Sentence denotes Considering lack of respiratory improvement and progression of fibrosis on radiological imaging prednisolone was started.
T150 16052-16155 Sentence denotes After five days prednisolone was stopped because of a positive GM index of 3.4 from repeated BAL fluid.
T151 16156-16196 Sentence denotes Fungal culture remained negative though.
T152 16197-16253 Sentence denotes Her respiratory status stabilised but remained critical.
T153 16254-16376 Sentence denotes After pausing the sedation, the patient remained unresponsive and CT head showed ischemia with small areas of haemorrhage.
T154 16377-16512 Sentence denotes In light of her pour neurologic and respiratory prognosis, treatment was ended and patient expired after 26 days on ventilator support.
T155 16513-16612 Sentence denotes In the core needle biopsy specimens the lung tissue largely preserved its preexisting architecture.
T156 16613-16765 Sentence denotes Histologic findings included an inflammatory infiltrate consisting of neutrophils and lymphocytes, and only a sporadic intra-alveolar fibroblastic plug.
T157 16766-16900 Sentence denotes The striking, distinctive feature of this case was the presence of thin, delicate hyaline membranes along the alveolar wall (Fig. 2C).
T158 16901-16949 Sentence denotes Again, micro thrombi were observed in this case.
T159 16950-17000 Sentence denotes No fungi could be demonstrated in the PAS-D stain.
T160 17001-17114 Sentence denotes Together with the clinical characteristics, these histologic findings were suggestive of diffuse alveolar damage.
T161 17116-17170 Sentence denotes 3.5 Case 4 – Acute fibrinous and organizing pneumonia
T162 17171-17314 Sentence denotes A 68-year old male without medical history of cardiopulmonary disease, was presented at the ED in a critical condition with fever and dyspnoea.
T163 17315-17434 Sentence denotes Patient was in need of endotracheal intubation and mechanical ventilation in prone position to improve his oxygenation.
T164 17435-17572 Sentence denotes To exclude secondary infection, BAL was performed and revealed a positive GM and cultured Aspergillus fumigatus and Enterococcus faecium.
T165 17573-17627 Sentence denotes Antifungal therapy was added to his treatment regimen.
T166 17628-17822 Sentence denotes Chest CT-angiography showed segmental pulmonary emboli along with extensive bilateral areas of ground-glass opacity with reticulation and multiple patchy non-dependant peripheral consolidations.
T167 17823-17910 Sentence denotes In contrast to normal areas, the abnormal areas showed mild bronchiectasis (Fig. 1-4A).
T168 17911-17984 Sentence denotes The patient remained unresponsive after cessation of sedative medication.
T169 17985-18075 Sentence denotes CT head showed extensive bilateral cerebellar ischemia with small haemorrhagic components.
T170 18076-18198 Sentence denotes After three weeks of mechanical ventilation his respiratory status worsened and treatment was ended due to poor prognosis.
T171 18199-18256 Sentence denotes The patient passed away 21 days after hospital admission.
T172 18257-18354 Sentence denotes Biopsy specimens showed a pattern of lung injury, that was partially identical to that of case 1.
T173 18355-18454 Sentence denotes Intra-alveolar depositions of fibroblastic tissue were found, consistent with organizing pneumonia.
T174 18455-18622 Sentence denotes However, a predominant, diffuse component of fibrinous exudate in the alveoli was present, which was not the case in the aforementioned case with organizing pneumonia.
T175 18623-18757 Sentence denotes Other histologic findings were a chronic inflammatory infiltrate, and mild interstitial changes, including widening of alveolar septa.
T176 18758-18820 Sentence denotes Microthrombi in small septal blood vessels were also observed.
T177 18821-18895 Sentence denotes Neither remnants hyaline membranes nor prominent eosinophils were present.
T178 18896-18942 Sentence denotes Additional PAS-D stain did not show any fungi.
T179 18943-19062 Sentence denotes The overall histologic pattern of this case was classified as acute fibrinous and organizing pneumonia (AFOP), Fig. 2D.
T180 19064-19077 Sentence denotes 4 Discussion
T181 19078-19192 Sentence denotes We report pathology in deceased critically ill ICU COVID patient in the late phase of disease to be heterogeneous.
T182 19193-19352 Sentence denotes Histopathologically, we observed four distinct histopathological patterns: AFOP, DAD, fibrosis and, in four out of seven patients an organizing pneumonia (OP).
T183 19353-19560 Sentence denotes Interestingly, our findings are in contrast to previously reported postmortem studies in COVID-19 patients in which DAD is the most common predominant pattern [[10], [11], [12],[15], [16], [17], [18], [19]].
T184 19561-19679 Sentence denotes In two recent autopsy studies of 21 and 12 deceased COVID-19 patients, prevalence of DAD was 76% and 67% respectively.
T185 19680-19762 Sentence denotes None of the patients had the postmortem diagnosis of organizing pneumonia [10,11].
T186 19763-19871 Sentence denotes In the study of Ackermann and colleagues, pulmonary histology of all seven studied patients showed DAD [19].
T187 19872-20086 Sentence denotes Although the organizing stage of DAD may overlap with the histopathological features of OP in lung biopsy, the histologic hallmark of DAD, namely remnants of hyaline membranes were not present in our four OP cases.
T188 20087-20357 Sentence denotes Most plausible explanation for the more common pattern of OP in our study population when compared to previous mentioned studies is the difference in length of hospital and ICU stay correlating with more advanced disease and longer treatment with mechanical ventilation.
T189 20358-20505 Sentence denotes In the studies mentioned above the mean hospital stay was six days or less and most of the patients did not receive mechanical ventilatory support.
T190 20506-20662 Sentence denotes In our present series mean hospital stay of 22 days is significant longer and all patients died in the ICU with a mean of 20 days on mechanical ventilation.
T191 20663-20794 Sentence denotes Secondary OP can be seen in association with many types of non-specific lung injury, including viral infections and drug reactions.
T192 20795-20921 Sentence denotes OP is reported following severe influenza infections [[20], [21], [22], [23], [24]] and Middle East Respiratory Syndrome [25].
T193 20922-21115 Sentence denotes Most recently, Copin et al. reported postmortem biopsies on six patients with COVID and reported in five patients with phenotype H and AFOP histology in contrast to their patient with DAD [26].
T194 21116-21211 Sentence denotes Estimated elapsed disease time in the AFOP group was 20 days versus 6 days in the DAD patients.
T195 21212-21285 Sentence denotes In our opinion this supports the theory that pathology changes over time.
T196 21286-21410 Sentence denotes Although the exact pathogenesis of OP remains unknown, it is thought that OP is a consequence of alveolar epithelial injury.
T197 21411-21555 Sentence denotes This initial epithelial injury is followed by leakage of plasma proteins, leading to a cascade of host responses with hyperinflammation [27,28].
T198 21556-21674 Sentence denotes Subsequent fibroblast recruitment and connective tissue and fibroblast organisation is seen within the alveolar space.
T199 21675-21892 Sentence denotes Vascular endothelial growth factor (VEGF) and basic fibroblast growth factor (bFGF) play a central role in organizing pneumonia and are highly expressed in intraluminal fibromyxoid lesion in organizing pneumonia [29].
T200 21893-22064 Sentence denotes Interestingly, binding to ACE2 receptor is recognized as a critical initial step for SARS-CoV-2 to entry alveolar type II cells, resulting in loss of ACE2 at the membrane.
T201 22065-22185 Sentence denotes ACE 2 is a negative regulator of the renin-angiotensin system (RAS) and this depletion of ACE2 upregulates the RAS [30].
T202 22186-22241 Sentence denotes An activated RAS can induce Fibroblastic Growth Factor.
T203 22242-22303 Sentence denotes ACE2 also plays a role in regulating the effect of VEGF [31].
T204 22304-22458 Sentence denotes Therefore, depletion of ACE2 due to the high affinity of SARS-CO-V2 to ACE2 might play a role in the pathogenesis of COVID19 related organizing pneumonia.
T205 22459-22694 Sentence denotes Being aware that medication can be the cause of OP it is notable is that in our study six out of seven patients received chloroquine, at that time the advised treatment by the Dutch National Institute for Public Health and Environment.
T206 22695-22922 Sentence denotes Although chloroquine use is associated with cardiovascular disorders, pulmonary side effects, i.e. drug induced interstitial lung disease, are not described before, and therefore an unlikely cause of the observed histologic OP.
T207 22923-23006 Sentence denotes We found no studies reporting possible relations between antifungal therapy and OP.
T208 23007-23177 Sentence denotes In retrospect, chest CT scans of each of the patients showed a different development during hospital admission, concordant with the histopathological diagnosis (Table 2).
T209 23178-23305 Sentence denotes Development of peripheral nondependent consolidations warrant further investigation in the presence of an organizing pneumonia.
T210 23306-23365 Sentence denotes Excluding nosocomial infections in such cases is essential.
T211 23366-23553 Sentence denotes The diversity in histopathological findings correlating with radiological findings is interesting considering possible therapeutic implications and should be subject for further research.
T212 23554-23755 Sentence denotes Although steroids are not routinely recommended to be used in de early phase of SARS-CoV-2 pneumonia, they might have a role in the late phase of COVID19 when an organizing pneumonia is suspected [32].
T213 23756-23965 Sentence denotes Recently there is increasing awareness and concern for development of secondary infection in COVID patients e.g. invasive aspergillus co-infection, a contra-indication for (long-term) systemic steroid therapy.
T214 23966-24079 Sentence denotes Criteria and risk factors for invasive pulmonary aspergillosis are well defined in immunocompromised populations.
T215 24080-24290 Sentence denotes Furthermore it is a well known complication of severe influenza pneumonia with reported incidences of 19% in ICU patients admitted for influenza related acute respiratory failure with high mortality rates [33].
T216 24291-24479 Sentence denotes In COVID-19 associated pulmonary aspergillosis (CAPA) case definition is absent, although recently an expert panel proposed a classification for IAPA, which was used to classify CAPA [14].
T217 24480-24692 Sentence denotes Pathophysiology of CAPA consists of lung damage with bilateral alveolar-interstitial damage due to viral replication and cytokine storm in combination with marked low T-lymphocytes CD4 + T and CD8 + T cells [27].
T218 24693-24779 Sentence denotes Secondary infection due to lung tissue damage develop within a median of 17 days [34].
T219 24780-24892 Sentence denotes CAPA data are scarce but increasingly reported, although histological confirmation is still absent [9,13,35,36].
T220 24893-25034 Sentence denotes Of the first 31 COVID-19 patients admitted to our ICU, six where highly suspected for COVID-19 associated pulmonary aspergillosis (CAPA) [9].
T221 25035-25178 Sentence denotes In this case series, BAL fluid galactomannan was positive in six out of the seven cases, concluding in the clinical diagnosis of probable CAPA.
T222 25179-25268 Sentence denotes To our surprise, none of the lung biopsies showed any presence of invasive aspergillosis.
T223 25269-25483 Sentence denotes Lack of evidence for invasive pulmonary aspergillosis in our patients with probable CAPA raises the question whether patients with suspected CAPA truly develop invasive aspergillosis and require antifungal therapy.
T224 25484-25614 Sentence denotes For instance, the three deaths in the CAPA report from France were attributed to bacterial septic shock, and not to aspergillosis.
T225 25615-25822 Sentence denotes Although in our patients adequate antifungal treatment could be an explanation for the absence of histologic fungal features, we find this improbable as respiratory conditions deteriorated despite treatment.
T226 25823-25992 Sentence denotes Further research on the presence of CAPA, its case definition and the necessity for antifungal treatment and (relative) contraindication for steroid treatment is needed.
T227 25993-26167 Sentence denotes We acknowledge the limitations of this report and realize that due to limited sample size of pulmonary tissue, a sampling error in our histologic findings cannot be excluded.
T228 26168-26385 Sentence denotes Although conventional autopsy might be the preferred postmortem examination, postmortem ultrasound guided lung biopsies are a safe and valuable alternative, with an 83% concordance rate with conventional autopsy [37].
T229 26386-26628 Sentence denotes Especially in times of new emerging diseases, like COVID-19, histopathological investigation is essential in understanding the pathogenesis of SARS-CoV-2 infection and thereby providing information leading to possible new therapeutic options.
T230 26630-26643 Sentence denotes 5 Conclusion
T231 26644-26788 Sentence denotes We report late pulmonary pathological findings of COVID-19 ARDS to be heterogeneous and non-typical when compared to non-COVID-19 ARDS patients.
T232 26789-26877 Sentence denotes The predominant histologic pattern in our case series mainly consists of OP and not DAD.
T233 26878-26940 Sentence denotes A concordance with specific findings on chest CT is suggested.
T234 26941-27039 Sentence denotes The absence of histology proven aspergillosis provides further discussion on the presence of CAPA.
T235 27040-27224 Sentence denotes Based on these late postmortem histopathologic findings, we suggest that the empiric use of corticosteroid therapy in COVID-19 related ARDS should be reconsidered in selected patients.
T236 27225-27441 Sentence denotes Further research on the late phase of COVID19 in relation to the presence of different histologic patterns, it's concordance with radiology and the presence of COVID19 associated pulmonary aspergillosis is warranted.
T237 27443-27465 Sentence denotes Author's contributions
T238 27466-27539 Sentence denotes A.W·F, M.K.M.K, M.J.J.H.G., D.C.Y.Y. and A.W.F.M. drafted the manuscript.
T239 27540-27642 Sentence denotes N.J.M.M. and T.C.D.R critically revised the manuscript and approved the final version for publication.
T240 27643-27758 Sentence denotes All the authors reviewed the final draft of the manuscript and agreed on submitting it to Journal of Critical Care.
T241 27760-27767 Sentence denotes Support
T242 27768-27796 Sentence denotes No external funding support.
T243 27798-27805 Sentence denotes Funding
T244 27806-27930 Sentence denotes This research did not receive any specific grant from funding agencies in the public, commercial, or not-for-profit sectors.
T245 27932-27965 Sentence denotes Declaration of Competing Interest
T246 27966-28010 Sentence denotes The authors declare no conflict of interest.

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T44 1443-1451 SP_7 denotes COVID-19
T27 42-53 NCBITaxon:11118 denotes coronavirus
T28 68-76 SP_7 denotes COVID-19
T29 117-121 UBERON:0007221 denotes care
T30 160-171 UBERON:0001004 denotes respiratory
T31 306-312 UBERON:0000915 denotes thorax
T32 349-360 UBERON:0001004 denotes respiratory
T33 485-493 SP_7 denotes COVID-19
T34 589-593 UBERON:0002048 denotes lung
T35 910-924 GO:0007596 denotes thromboembolic
T36 998-1004 UBERON:0001638 denotes venous
T37 1005-1020 GO:0007596 denotes thromboembolism
T38 1041-1049 SP_7 denotes COVID-19
T39 1093-1102 UBERON:0002048 denotes pulmonary
T40 1157-1165 SP_7 denotes COVID-19
T41 1204-1212 SP_7 denotes COVID-19
T42 1312-1321 UBERON:0002048 denotes pulmonary
T43 1322-1328 UBERON:0000479 denotes tissue
T45 1474-1482 UBERON:0003215 denotes alveolar
T46 1561-1569 SP_7 denotes COVID-19
T47 1581-1590 UBERON:0002048 denotes pulmonary
T48 1783-1793 GO:0016265 denotes postmortem
T49 1803-1807 UBERON:0002048 denotes lung
T50 1808-1814 UBERON:0000479 denotes tissue
T51 2083-2091 SP_7 denotes COVID-19
T52 2224-2236 SP_7 denotes severe acute
T53 2237-2248 SP_7;UBERON:0001004 denotes respiratory
T54 2249-2271 SP_7 denotes syndrome coronavirus 2
T55 2273-2283 SP_7 denotes SARS-COV-2
T56 2328-2339 UBERON:0001004 denotes respiratory
T57 2407-2417 GO:0016265 denotes postmortem
T58 2444-2448 UBERON:0002048 denotes lung
T59 2498-2508 SP_7 denotes SARS-CoV-2
T60 2539-2560 GO:0001171 denotes reverse transcription
T61 2599-2605 UBERON:0007311 denotes sputum
T62 2613-2622 UBERON:0004242 denotes bronchial
T63 2697-2706 GO:0007586;UBERON:0001555 denotes digestive
T64 2707-2712 UBERON:0001555 denotes tract
T65 2736-2747 CHEBI:3638;DG_10;CHEBI:3638 denotes chloroquine
T66 2881-2896 GO:0050817 denotes anticoagulation
T67 2923-2930 CHEBI:24505;CHEBI:24505 denotes heparin
T68 3027-3036 UBERON:0002048 denotes pulmonary
T69 3112-3121 UBERON:0002048 denotes Pulmonary
T70 3213-3226 CHEBI:27680;CHEBI:27680 denotes galactomannan
T71 3228-3233 UBERON:0001977 denotes serum
T72 3238-3244 UBERON:0007311 denotes sputum
T73 3247-3255 UBERON:0003126 denotes tracheal
T74 3259-3268 UBERON:0004242 denotes bronchial
T75 3282-3295 CHEBI:27680;CHEBI:27680 denotes galactomannan
T76 3314-3329 UBERON:0002031 denotes bronchoalveolar
T77 3330-3336 UBERON:0004821 denotes lavage
T78 3370-3377 CHEBI:59132;CHEBI:59132 denotes antigen
T79 3456-3465 UBERON:0002048 denotes pulmonary
T80 3687-3692 UBERON:0001977 denotes serum
T81 3697-3708 NCBITaxon:5052 denotes Aspergillus
T82 3739-3749 GO:0016265 denotes Postmortem
T83 3776-3780 UBERON:0002048 denotes lung
T84 3826-3836 GO:0016265 denotes postmortem
T85 3881-3886 UBERON:0000170 denotes lungs
T86 3908-3913 GO:0016265 denotes death
T87 3915-3919 UBERON:0002048 denotes Lung
T88 3985-3993 UBERON:0001062 denotes anatomic
T89 4107-4112 UBERON:0000170 denotes lungs
T90 4145-4153 CHEBI:16842;CHEBI:16842 denotes formalin
T91 4205-4216 CHEBI:51686;CHEBI:51686 denotes Hematoxylin
T92 4228-4229 CHEBI:51686;CHEBI:51686 denotes H
T93 4238-4251 CHEBI:29149;CHEBI:29149 denotes periodic acid
T94 4666-4676 GO:0016265 denotes postmortem
T95 4703-4708 UBERON:0000170 denotes lungs
T96 4844-4853 UBERON:0002048 denotes pulmonary
T97 4880-4897 CHEBI:35705;CHEBI:35705 denotes immunosuppressive
T98 4967-4979 CHEBI:8378;CHEBI:8378 denotes prednisolone
T99 5094-5099 GO:0016265 denotes death
T100 5248-5257 UBERON:0002048 denotes pulmonary
T101 5491-5503 CHEBI:10023;CHEBI:10023 denotes voriconazole
T102 5569-5584 CHEBI:50858;CHEBI:50858 denotes corticosteroids
T103 5592-5604 CHEBI:8378;CHEBI:8378 denotes prednisolone
T104 5646-5660 CHEBI:50858;CHEBI:50858 denotes corticosteroid
T105 5702-5709 CHEBI:35341;CHEBI:35341 denotes steroid
T106 5784-5789 UBERON:0001443 denotes chest
T107 5872-5881 UBERON:0002048 denotes pulmonary
T108 5942-5949 CHEBI:35341;CHEBI:35341 denotes steroid
T109 5996-6001 UBERON:0001443 denotes chest
T110 6035-6040 UBERON:0000170 denotes lungs
T184 7079-7090 UBERON:0001004 denotes respiratory
T185 7110-7121 UBERON:0002299 denotes BAL broncho
T186 7122-7137 UBERON:0002299 denotes alveolar lavage
T187 7145-7153 SP_7 denotes COVID-19
T188 7165-7174 UBERON:0002048 denotes pulmonary
T189 7203-7209 UBERON:0002113 denotes kidney
T190 7281-7290 UBERON:0002048 denotes pulmonary
T191 7368-7369 UBERON:0003215 denotes R
T192 7373-7375 UBERON:0002048 denotes lo
T194 7430-7431 UBERON:0001443 denotes s
T204 7522-7523 UBERON:0002106 denotes e
T206 7535-7536 UBERON:0002113 denotes n
T208 7541-7542 UBERON:0002048 denotes l
T218 7561-7573 CL:0000057 denotes fibroblastic
T227 7603-7610 UBERON:0010210 denotes thrombi
T228 7620-7626 UBERON:0000055 denotes vessel
T230 7633-7634 SP_7 denotes r
T238 7649-7651 CL:0000775 denotes pi
T240 7656-7657 UBERON:0003215 denotes l
T248 7662-7663 NCBITaxon:10239 denotes l
T249 7665-7668 GO:0005634;CL:0000647 denotes ted
T250 7669-7679 CL:0000647 denotes giant cell
T251 7681-7693 GO:0005634 denotes intranuclear
T252 7694-7710 GO:0016234 denotes inclusion bodies
T254 7712-7713 UBERON:0002048 denotes n
T255 7713-7714 UBERON:0003215 denotes o
T257 7718-7719 CHEBI:51686;CHEBI:51686 denotes h
T260 7723-7726 CL:0000775 denotes P 2
T264 7740-7742 UBERON:0003215 denotes vi
T270 7751-7753 NCBITaxon:10239 denotes vi
T272 7754-7757 CL:0000647 denotes g c
T274 7757-7760 GO:0016234 denotes ons
T276 7776-7779 UBERON:0001443 denotes hie
T277 7803-7805 UBERON:3010752 denotes bs
T279 7823-7826 CHEBI:8378;CHEBI:8378 denotes ive
T282 7830-7831 UBERON:0002167 denotes r
T284 7866-7867 CHEBI:24261;CHEBI:24261 denotes t
T286 7886-7887 CHEBI:8378;CHEBI:8378 denotes i
T287 7892-7893 UBERON:0000033 denotes h
T289 7903-7905 UBERON:0001016 denotes ul
T290 7909-7911 UBERON:0001893 denotes cl
T291 7914-7916 UBERON:0000033 denotes ed
T292 7925-7928 UBERON:0002048 denotes ll,
T293 7929-7930 UBERON:0000479 denotes i
T294 7934-7935 UBERON:0002048 denotes n
T298 7952-7955 UBERON:0001981 denotes bod
T307 8046-8048 CHEBI:8378;CHEBI:8378 denotes PE
T308 8050-8053 CHEBI:8378;CHEBI:8378 denotes nfl
T310 8060-8061 UBERON:0001004 denotes y
T313 8075-8076 UBERON:0001004 denotes y
T318 8089-8091 CL:0000542 denotes es
T319 8108-8116 UBERON:0003215 denotes alveolar
T320 8117-8129 CL:0000057 denotes fibroblastic
T321 8130-8134 UBERON:0010148 denotes plug
T322 8563-8628 UBERON:0004894 denotes AFOP 5 GGO, consolidation Intra-alveolar fibromyxoid/fibroblastic
T323 8649-8656 UBERON:0010210 denotes thrombi
T324 8733-8760 NCBITaxon:4751 denotes bodies, no hyphae OP 6 GGO,
T325 9107-9115 UBERON:0003215 denotes alveolar
T326 9567-9594 UBERON:0001852 denotes exity and importance of the
T327 9716-9726 GO:0015671 denotes ore detail
T328 9954-10008 NCBITaxon:746128 denotes as not repeated). 1A: bilateral areas of GGO, patchy s
T329 10056-10117 NCBITaxon:1352 denotes ession of dens subpleural consolidations with air-bronchogram
T330 10272-10292 UBERON:0002048 denotes consolidations, more
T331 10829-10833 UBERON:0000033 denotes hest
T332 10864-10919 UBERON:0002037 denotes areas of ground-glass opacity with both central and per
T333 11251-11325 UBERON:0001004 denotes raphy showed pulmonary emboli along with new areas of ground-glass opacity
T334 11937-11946 UBERON:0002048 denotes lved lung
T335 12279-12295 UBERON:0003215 denotes al, and vascular
T336 12335-12372 CL:0000057 denotes fungi were present in de PAS-D stain.
T337 12373-12388 UBERON:0000479 denotes This histologic
T338 12849-12856 UBERON:0003215 denotes alveoli
T339 14340-14456 UBERON:0005169 denotes ifungal treatment initiated. CT head was performed because of the development of an epileptic insult and showed smal
T340 14586-14632 UBERON:0003215 denotes ad was seen with poor prognosis. Palliative tr
T341 14642-14673 UBERON:0003037 denotes s started and the patient decea
T342 14831-14934 UBERON:0003037 denotes structures were unrecognizable and replaced by extensive fibrosis (Fig. 2B). What remained were several
T343 14956-14995 UBERON:0001981 denotes bronchial epithelium, and blood vessels
T344 15314-15382 GO:0016020 denotes mental pulmonary emboli and diffuse bilateral ground-glass opacities
T345 15632-15833 CL:0000771 denotes eters. Chest CT-angiography showed bilateral sub-segmental pulmonary emboli, persistent ground-glass opacities and consolidation. Newly formed coarse cyst-like lesions in the middle and ventral regions
T346 16387-16407 NCBITaxon:4751 denotes f her pour neurologi
T347 19420-19430 GO:0016265 denotes postmortem
T348 19442-19450 SP_7 denotes COVID-19
T349 19613-19621 SP_7 denotes COVID-19
T350 19709-19719 GO:0016265 denotes postmortem
T351 19805-19814 UBERON:0002048 denotes pulmonary
T352 19966-19970 UBERON:0002048 denotes lung
T353 20038-20047 GO:0016020 denotes membranes
T354 20597-20601 GO:0016265 denotes died
T355 20735-20739 UBERON:0002048 denotes lung
T356 20758-20763 NCBITaxon:10239 denotes viral
T357 20779-20783 CHEBI:23888;CHEBI:23888 denotes drug
T358 20959-20969 GO:0016265 denotes postmortem
T359 21383-21391 UBERON:0003215 denotes alveolar
T360 21392-21402 UBERON:0000483 denotes epithelial
T361 21424-21434 UBERON:0000483 denotes epithelial
T362 21468-21474 UBERON:0001969 denotes plasma
T363 21567-21577 CL:0000057 denotes fibroblast
T364 21594-21611 UBERON:0002384 denotes connective tissue
T365 21616-21626 CL:0000057 denotes fibroblast
T366 21659-21667 UBERON:0003215 denotes alveolar
T367 21684-21695 UBERON:0001986 denotes endothelial
T368 21711-21715 PR:000017284 denotes VEGF
T369 21721-21726 PR:000007489 denotes basic
T370 21727-21737 PR:000007489;CL:0000057 denotes fibroblast
T371 21738-21751 PR:000007489 denotes growth factor
T372 21753-21757 PR:000007489 denotes bFGF
T373 21818-21827 GO:0010467 denotes expressed
T374 21919-21923 G_3;PG_10;PR:000003622 denotes ACE2
T375 21978-21988 SP_7 denotes SARS-CoV-2
T376 21998-22006 UBERON:0003215;CL:0002063 denotes alveolar
T377 22007-22020 CL:0002063 denotes type II cells
T378 22043-22047 G_3;PG_10;PR:000003622 denotes ACE2
T379 22055-22063 GO:0016020 denotes membrane
T380 22065-22070 G_3;PG_10;PR:000003622 denotes ACE 2
T381 22102-22107 PR:000013883 denotes renin
T382 22155-22159 G_3;PG_10;PR:000003622 denotes ACE2
T383 22214-22226 CL:0000057 denotes Fibroblastic
T384 22242-22246 G_3;PG_10;PR:000003622 denotes ACE2
T385 22268-22278 GO:0065007 denotes regulating
T386 22328-22332 G_3;PG_10;PR:000003622 denotes ACE2
T387 22361-22365 PR:000014459;SP_10 denotes SARS
T388 22375-22379 G_3;PG_10;PR:000003622 denotes ACE2
T389 22421-22428 SP_7 denotes COVID19
T390 22580-22591 CHEBI:3638;DG_10;CHEBI:3638 denotes chloroquine
T391 22704-22715 CHEBI:3638;DG_10;CHEBI:3638 denotes chloroquine
T392 22739-22753 UBERON:0004535 denotes cardiovascular
T393 22765-22774 UBERON:0002048 denotes pulmonary
T394 22794-22798 CHEBI:23888;CHEBI:23888 denotes drug
T395 22807-22819 UBERON:0005169 denotes interstitial
T396 22820-22824 UBERON:0002048 denotes lung
T397 23022-23027 UBERON:0001443 denotes chest
T398 23563-23571 CHEBI:35341;CHEBI:35341 denotes steroids
T399 23634-23644 SP_7 denotes SARS-CoV-2
T400 23700-23707 SP_7 denotes COVID19
T401 23949-23956 CHEBI:35341;CHEBI:35341 denotes steroid
T402 24005-24014 UBERON:0002048 denotes pulmonary
T403 24239-24250 UBERON:0001004 denotes respiratory
T404 24294-24302 SP_7 denotes COVID-19
T405 24314-24323 UBERON:0002048 denotes pulmonary
T406 24516-24520 UBERON:0002048 denotes lung
T407 24543-24551 UBERON:0003215 denotes alveolar
T408 24552-24564 UBERON:0005169 denotes interstitial
T409 24579-24584 NCBITaxon:10239;GO:0006260 denotes viral
T410 24585-24596 GO:0006260 denotes replication
T411 24647-24660 CL:0000084 denotes T-lymphocytes
T412 24661-24664 PR:000001004 denotes CD4
T413 24667-24668 CL:0000084 denotes T
T414 24679-24686 CL:0000084 denotes T cells
T415 24720-24724 UBERON:0002048 denotes lung
T416 24725-24731 UBERON:0000479 denotes tissue
T417 24909-24917 SP_7 denotes COVID-19
T418 24979-24987 SP_7 denotes COVID-19
T419 24999-25008 UBERON:0002048 denotes pulmonary
T420 25060-25065 UBERON:0006314 denotes fluid
T421 25066-25079 CHEBI:27680;CHEBI:27680 denotes galactomannan
T422 25208-25212 UBERON:0002048 denotes lung
T423 25299-25308 UBERON:0002048 denotes pulmonary
T424 25508-25514 GO:0016265 denotes deaths
T425 25565-25574 NCBITaxon:2 denotes bacterial
T426 25768-25779 UBERON:0001004 denotes respiratory
T427 25964-25971 CHEBI:35341;CHEBI:35341 denotes steroid
T428 26086-26095 UBERON:0002048 denotes pulmonary
T429 26096-26102 UBERON:0000479 denotes tissue
T430 26221-26231 GO:0016265 denotes postmortem
T431 26245-26255 GO:0016265 denotes postmortem
T432 26274-26278 UBERON:0002048 denotes lung
T433 26437-26445 SP_7 denotes COVID-19
T434 26529-26539 SP_7 denotes SARS-CoV-2
T435 26659-26668 UBERON:0002048 denotes pulmonary
T436 26694-26702 SP_7 denotes COVID-19
T437 26765-26773 SP_7 denotes COVID-19
T438 26918-26923 UBERON:0001443 denotes chest
T439 27060-27070 GO:0016265 denotes postmortem
T440 27132-27146 CHEBI:50858;CHEBI:50858 denotes corticosteroid
T441 27158-27166 SP_7 denotes COVID-19
T442 27263-27270 SP_7 denotes COVID19
T443 27385-27392 SP_7 denotes COVID19
T444 27404-27413 UBERON:0002048 denotes pulmonary
T62119 1839-1844 SP_7 denotes COVID
T53347 27404-27413 UBERON:0002048 denotes pulmonary
T66936 225-233 SP_7 denotes present
T35906 363-375 SP_7 denotes stress syndr
T89649 376-386 SP_7;UBERON:0001004 denotes me (ARDS).
T80423 387-410 SP_7 denotes Often an atypical high
T77332 412-422 SP_7 denotes mpliance p
T23414 467-477 UBERON:0001004 denotes al ventila
T23002 545-555 GO:0016265 denotes acteristic
T60852 583-587 UBERON:0002048 denotes h lo
T36899 637-647 SP_7 denotes g ICU stay
T82912 678-699 GO:0001171 denotes bilateral patchy gro
T17380 738-744 UBERON:0007311 denotes sion o
T17660 752-759 UBERON:0004242 denotes gress t
T50696 833-842 GO:0007586;UBERON:0001555 denotes observed
T86112 843-848 UBERON:0001555 denotes featu
T42737 872-883 CHEBI:3638;DG_10;CHEBI:3638 denotes role in the
T83979 1018-1033 GO:0050817 denotes sm reported was
T7331 1060-1067 CHEBI:24505;CHEBI:24505 denotes dmitted
T34114 1165-1174 UBERON:0002048 denotes patients
T52553 1250-1259 UBERON:0002048 denotes ions seem
T21703 1352-1365 CHEBI:27680;CHEBI:27680 denotes nfectious dis
T97231 1367-1372 UBERON:0001977 denotes se is
T41661 1377-1383 UBERON:0007311 denotes he utm
T93902 1386-1394 UBERON:0003126 denotes importa
T75668 1398-1405 UBERON:0004242 denotes The sc
T99671 1419-1432 CHEBI:27680;CHEBI:27680 denotes le pathologic
T86981 1451-1466 UBERON:0002031 denotes patients show
T51837 1467-1473 UBERON:0004821 denotes iffuse
T19506 1507-1514 CHEBI:59132;CHEBI:59132 denotes to ARDS
T9649 1593-1602 UBERON:0002048 denotes pergillos
T41715 1824-1829 UBERON:0001977 denotes patie
T81615 1834-1845 NCBITaxon:5052 denotes with COVID
T80302 1874-1884 GO:0016265 denotes nical vent
T65199 1911-1915 UBERON:0002048 denotes c fi
T43236 1961-1971 GO:0016265 denotes logical an
T69714 2014-2019 UBERON:0000170 denotes e. Th
T56052 2041-2046 GO:0016265 denotes te to
T98173 2048-2052 UBERON:0002048 denotes ew i
T61880 2116-2124 UBERON:0001062 denotes or treat
T30595 2239-2245 UBERON:0000170 denotes spirat
T75123 2278-2286 CHEBI:16842;CHEBI:16842 denotes COV-2) a
T96536 2339-2350 CHEBI:51686;CHEBI:51686 denotes failure be
T48493 2362-2363 CHEBI:51686;CHEBI:51686 denotes c
T9930 2372-2385 CHEBI:29149;CHEBI:29149 denotes d 30 April 20
T72105 2795-2805 GO:0016265 denotes ealth and
T2841 2832-2837 UBERON:0000170 denotes its
T58291 2973-2982 UBERON:0002048 denotes Bronchosc
T96902 3009-3025 CHEBI:35705;CHEBI:35705 denotes , and testing fo
T96250 3094-3106 CHEBI:8378;CHEBI:8378 denotes ending physi
T21854 3219-3224 GO:0016265 denotes omann
T57492 3375-3384 UBERON:0002048 denotes en ELISA
T41634 3618-3630 CHEBI:10023;CHEBI:10023 denotes ion with cli
T55502 3696-3711 CHEBI:50858;CHEBI:50858 denotes Aspergillus sp
T68620 3719-3731 CHEBI:8378;CHEBI:8378 denotes red from BAL
T3137 3775-3789 CHEBI:50858;CHEBI:50858 denotes lung With per
T8024 3831-3838 CHEBI:35341;CHEBI:35341 denotes ortem c
T69823 3914-3919 UBERON:0001443 denotes Lung
T65939 4004-4013 UBERON:0002048 denotes as a refe
T56069 4075-4084 CHEBI:35341;CHEBI:35341 denotes biopsies
T93868 4131-4136 UBERON:0001443 denotes were
T38163 4170-4175 UBERON:0000170 denotes affin
T111 4536-4548 CHEBI:8378;CHEBI:8378 denotes arch Committ
T112 4655-4666 NCBITaxon:5052 denotes underwent
T113 4811-4832 NCBITaxon:746128 denotes ients had a history o
T114 4833-4845 NCBITaxon:1350 denotes (chronic) p
T115 4919-4932 NCBITaxon:1350 denotes pital admissi
T116 5071-5084 NCBITaxon:1350 denotes hospital adm
T117 5124-5134 UBERON:0001004 denotes s. Patient
T118 5158-5165 UBERON:0002186 denotes 21(rang
T119 5166-5174 UBERON:0002299 denotes 9–36) v
T120 5189-5197 SP_7 denotes In five
T121 5209-5218 UBERON:0002048 denotes n patient
T122 5247-5253 UBERON:0002113 denotes pulmo
T123 5289-5302 CHEBI:27680;CHEBI:27680 denotes definition o
T124 5325-5334 UBERON:0002048 denotes al. [9],
T125 5582-5590 UBERON:0003215 denotes ds (60 m
T126 5603-5615 CL:0000057 denotes e daily) at
T127 5636-5643 UBERON:0010210 denotes nosis a
T128 5645-5652 UBERON:0010210 denotes cortic
T129 5662-5669 UBERON:0000055 denotes reatmen
T130 5695-5707 CL:0000647;GO:0005634 denotes on for stero
T131 5708-5718 CL:0000647 denotes d treatmen
T132 5720-5731 GO:0005634 denotes in these pa
T133 5732-5749 GO:0016234 denotes ients was a suspi
T134 5889-5897 UBERON:0003215 denotes llosis w
T135 5934-5946 CL:0000647;GO:0005634 denotes before ster
T136 5947-5957 CL:0000647 denotes id treatme
T137 5959-5970 GO:0005634 denotes was starte
T138 5971-5987 GO:0016234 denotes . Radiologic fin
T139 6107-6116 GO:0016020 denotes ent chara
T140 6133-6141 UBERON:0003215 denotes inical c
T141 6142-6154 CL:0000057 denotes urse. Case S
T142 6167-6174 UBERON:0010210 denotes s) Medi
T143 6201-6213 CL:0000647;GO:0005634 denotes days Total v
T144 6214-6224 CL:0000647 denotes ntilated d
T145 6226-6237 GO:0005634 denotes s Berlin cl
T146 6238-6254 GO:0016234 denotes ssification of A
T147 6367-6375 UBERON:0003215 denotes use dur
T148 6376-6389 CL:0000057 denotes ng hospital a
T149 6390-6396 UBERON:0000479 denotes missio
T150 6457-6465 UBERON:0003215 denotes e Low Ye
T151 6466-6471 UBERON:0003037 denotes GM n
T152 6479-6486 UBERON:0010210 denotes No Yes
T153 6512-6524 CL:0000647;GO:0005634 denotes re High Yes
T154 6525-6535 CL:0000647 denotes M index 4.
T155 6537-6548 GO:0005634 denotes (day 19) As
T156 6549-6565 GO:0016234 denotes ergillus fumigat
T157 6605-6613 UBERON:0003215 denotes 0 26 Sev
T158 6626-6638 CL:0000057 denotes M index 3.4
T159 6659-6666 UBERON:0010210 denotes Yes 5 
T160 6692-6704 GO:0005634;CL:0000647 denotes derate Low Y
T161 6705-6715 CL:0000647 denotes s GM index
T162 6717-6728 GO:0005634 denotes .7 (day 1)
T163 6729-6745 GO:0016234 denotes spergillus fumig
T164 6783-6791 UBERON:0003215 denotes No 5 M,
T165 6804-6816 CL:0000057 denotes 2 21 Moderat
T166 6843-6851 UBERON:0003215 denotes 20) Ente
T167 6852-6857 UBERON:0003037 denotes ococc
T168 6865-6872 UBERON:0010210 denotes um Prob
T169 6898-6910 GO:0005634;CL:0000647 denotes 3 HT, DM 13
T170 6911-6921 CL:0000647 denotes Moderate
T171 6923-6934 GO:0005634 denotes w No GM ind
T172 6935-6951 GO:0016234 denotes x 1.7 (day 11) P
T173 7034-7042 UBERON:0003215 denotes faecali
T174 7055-7067 CL:0000057 denotes s Yes 4 days
T175 7100-7108 UBERON:0003215 denotes syndrome
T176 7109-7114 UBERON:0003037 denotes BAL
T177 7122-7129 UBERON:0010210 denotes alveola
T178 7155-7167 GO:0005634;CL:0000647 denotes ssociated pu
T179 7168-7178 CL:0000647 denotes monary asp
T180 7180-7191 GO:0005634 denotes gillosis; C
T181 7192-7208 GO:0016234 denotes I, chronic kidne
T182 7280-7288 UBERON:0003215 denotes pulmona
T183 7354-7363 UBERON:0002048 denotes indings.
T5690 7438-7448 UBERON:0001004 denotes O, crazy p
T89823 7468-7479 UBERON:0002299 denotes consolidat
T6849 7480-7495 UBERON:0002299 denotes on, subpleural
T71154 7503-7511 SP_7 denotes segment
T14667 7523-7532 UBERON:0002048 denotes gmental P
T66720 7561-7567 UBERON:0002113 denotes fibrob
T11317 7639-7648 UBERON:0002048 denotes a with at
T28427 7786-7794 UBERON:0003215 denotes segment
T80397 7860-7869 UBERON:0002048 denotes olar stru
T193 8367-8372 UBERON:0001443 denotes stic
T73310 8431-8436 UBERON:0001443 denotes ning
T195 8507-8517 UBERON:0003893 denotes ed giant c
T196 8567-8571 UBERON:0004096 denotes 5 G
T197 8636-8641 UBERON:0000170 denotes (32%)
T198 9211-9216 UBERON:0001443 denotes n bod
T199 9275-9280 UBERON:0001443 denotes onia,
T200 9348-9358 UBERON:0003893 denotes zing pneum
T201 9407-9411 UBERON:0004096 denotes te h
T202 9478-9483 UBERON:0000170 denotes of f
T203 10167-10172 UBERON:0001443 denotes g pat
T15177 10289-10299 UBERON:0002106 denotes ore pronou
T205 10473-10478 UBERON:0002113 denotes ed cy
T36509 10497-10502 UBERON:0002113 denotes middl
T207 10579-10584 UBERON:0001443 denotes eral
T30186 10607-10618 UBERON:0002048 denotes d bronchiec
T209 10692-10696 UBERON:0004096 denotes ific
T210 10825-10835 UBERON:0001016 denotes al chest C
T211 10863-10867 UBERON:0000033 denotes are
T212 10877-10882 UBERON:0000955 denotes nd-gl
T213 10963-10978 UBERON:0001636 denotes dependant conso
T214 10992-10996 GO:0016265 denotes area
T215 11022-11032 GO:0016265 denotes (Fig. 1-1A
T216 11100-11104 UBERON:0002048 denotes y su
T217 11105-11111 UBERON:0000479 denotes port a
T81145 11175-11187 CL:0000057 denotes rapy was ini
T219 11214-11221 UBERON:0003215 denotes echanic
T220 11239-11250 CL:0000235 denotes st CT-angio
T221 11285-11289 UBERON:0002048 denotes g wi
T222 11290-11296 UBERON:0000479 denotes h new
T223 11382-11390 UBERON:0003215 denotes ir-bronc
T224 11443-11458 UBERON:0001981 denotes out by bronchi
T225 11466-11474 UBERON:0003215 denotes re. Pati
T226 11475-11480 UBERON:0003037 denotes nt's
T28263 11517-11525 UBERON:0010210 denotes head re
T40605 11544-11550 UBERON:0000055 denotes ia due
T229 11616-11625 UBERON:0000483 denotes r cerebra
T34853 11655-11664 SP_7 denotes days afte
T231 11679-11684 NCBITaxon:4751 denotes stmor
T232 11806-11810 UBERON:0002048 denotes amo
T233 11838-11846 UBERON:0003215 denotes lastic b
T234 11847-11859 CL:0000057 denotes dies was pre
T235 11907-11908 CHEBI:51686;CHEBI:51686 denotes
T236 11936-11944 UBERON:0003215 denotes olved lu
T237 11981-11982 CHEBI:51686;CHEBI:51686 denotes
T74625 12031-12040 CL:0000775 denotes ominent a
T239 12045-12056 CL:0000542 denotes ar fibrinou
T79223 12118-12126 UBERON:0003215 denotes he alveo
T241 12136-12137 CHEBI:51686;CHEBI:51686 denotes w
T242 12188-12195 UBERON:0003215 denotes rger si
T243 12213-12214 CHEBI:51686;CHEBI:51686 denotes E
T244 12226-12234 UBERON:0010210 denotes logic fi
T245 12245-12251 UBERON:0000055 denotes his ca
T246 12253-12254 CHEBI:51686;CHEBI:51686 denotes
T247 12292-12303 CL:0000322 denotes lar phenoty
T55890 12311-12316 NCBITaxon:10239 denotes SARS-
T46051 12359-12371 GO:0005634;CL:0000647 denotes PAS-D stain
T11789 12372-12383 CL:0000647 denotes This histo
T23332 12397-12408 GO:0005634 denotes is characte
T84342 12409-12425 GO:0016234 denotes istic for an org
T253 12427-12428 CHEBI:51686;CHEBI:51686 denotes i
T81672 12463-12467 UBERON:0002048 denotes lung
T27688 12495-12503 UBERON:0003215 denotes alveolar
T256 12504-12516 CL:0000057 denotes fibroblastic
T1033 12564-12565 CHEBI:51686;CHEBI:51686 denotes H
T258 12593-12601 UBERON:0003215 denotes alveolar
T259 12640-12641 CHEBI:51686;CHEBI:51686 denotes H
T42968 12690-12701 CL:0000775 denotes neutrophils
T261 12706-12717 CL:0000542 denotes lymphocytes
T262 12779-12787 UBERON:0003215 denotes alveolar
T263 12797-12798 CHEBI:51686;CHEBI:51686 denotes H
T70845 12849-12856 UBERON:0003215 denotes alveoli
T265 12874-12875 CHEBI:51686;CHEBI:51686 denotes H
T266 12887-12895 UBERON:0010210 denotes thrombus
T267 12906-12912 UBERON:0000055 denotes vessel
T268 12914-12915 CHEBI:51686;CHEBI:51686 denotes H
T269 12952-12963 CL:0000322 denotes pneumocytes
T29843 12971-12976 NCBITaxon:10239 denotes viral
T271 13019-13033 GO:0005634;CL:0000647 denotes multinucleated
T25696 13034-13045 CL:0000647 denotes giant cells
T273 13059-13071 GO:0005634 denotes intranuclear
T99425 13072-13088 GO:0016234 denotes inclusion bodies
T275 13090-13091 CHEBI:51686;CHEBI:51686 denotes H
T62375 13329-13334 UBERON:0001443 denotes chest
T96861 13531-13536 UBERON:3010752 denotes lobes
T278 13608-13619 UBERON:0001004 denotes respiratory
T890 13711-13723 CHEBI:8378;CHEBI:8378 denotes prednisolone
T280 13785-13790 UBERON:0001443 denotes chest
T281 13823-13832 UBERON:0002048 denotes pulmonary
T3895 13847-13857 UBERON:0002167 denotes right lung
T283 14119-14125 NCBITaxon:4751 denotes fungal
T96203 14165-14179 CHEBI:24261;CHEBI:24261 denotes glucocorticoid
T285 14259-14280 NCBITaxon:746128 denotes Aspergillus fumigatus
T42190 14293-14305 CHEBI:8378;CHEBI:8378 denotes prednisolone
T85772 14372-14376 UBERON:0000033 denotes head
T288 14486-14499 UBERON:0016525 denotes frontal lobes
T90302 14501-14511 UBERON:0001016 denotes Neurologic
T55602 14547-14555 UBERON:0001893 denotes cerebral
T84549 14584-14588 UBERON:0000033 denotes head
T87751 14737-14741 UBERON:0002048 denotes lung
T56185 14742-14748 UBERON:0000479 denotes tissue
T88680 14803-14807 UBERON:0002048 denotes lung
T295 14822-14830 UBERON:0003215 denotes Alveolar
T296 14943-14954 CL:0000322 denotes pneumocytes
T297 14956-14976 UBERON:0002031 denotes bronchial epithelium
T87358 14982-14995 UBERON:0001981 denotes blood vessels
T299 15035-15040 NCBITaxon:4751 denotes fungi
T300 15097-15106 UBERON:0002048 denotes pulmonary
T301 15140-15148 UBERON:0003215 denotes alveolar
T302 15321-15330 UBERON:0002048 denotes pulmonary
T303 15578-15587 UBERON:0002048 denotes pulmonary
T304 15691-15700 UBERON:0002048 denotes pulmonary
T305 15905-15909 UBERON:0002048 denotes lung
T306 15950-15961 UBERON:0001004 denotes respiratory
T84520 16026-16038 CHEBI:8378;CHEBI:8378 denotes prednisolone
T78423 16068-16080 CHEBI:8378;CHEBI:8378 denotes prednisolone
T309 16149-16154 UBERON:0006314 denotes fluid
T65961 16201-16212 UBERON:0001004 denotes respiratory
T311 16323-16327 UBERON:0000033 denotes head
T312 16398-16408 UBERON:0001016 denotes neurologic
T66590 16413-16424 UBERON:0001004 denotes respiratory
T314 16468-16475 GO:0016265 denotes expired
T315 16553-16557 UBERON:0002048 denotes lung
T316 16558-16564 UBERON:0000479 denotes tissue
T317 16683-16694 CL:0000775 denotes neutrophils
T40311 16699-16710 CL:0000542 denotes lymphocytes
T61749 16738-16746 UBERON:0003215 denotes alveolar
T93849 16747-16759 CL:0000057 denotes fibroblastic
T97596 16760-16764 UBERON:0010148 denotes plug
T49760 16876-16889 UBERON:0004894 denotes alveolar wall
T73271 16914-16921 UBERON:0010210 denotes thrombi
T36662 16953-16958 NCBITaxon:4751 denotes fungi
T978 17098-17106 UBERON:0003215 denotes alveolar
T31499 17338-17350 UBERON:0001852 denotes endotracheal
T16403 17422-17433 GO:0015671 denotes oxygenation
T14517 17525-17546 NCBITaxon:746128 denotes Aspergillus fumigatus
T4434 17551-17571 NCBITaxon:1352 denotes Enterococcus faecium
T32949 17666-17675 UBERON:0002048 denotes pulmonary
T23048 17988-17992 UBERON:0000033 denotes head
T39092 18020-18030 UBERON:0002037 denotes cerebellar
T74431 18124-18135 UBERON:0001004 denotes respiratory
T28835 18294-18298 UBERON:0002048 denotes lung
T46508 18361-18369 UBERON:0003215 denotes alveolar
T32950 18385-18397 CL:0000057 denotes fibroblastic
T85905 18398-18404 UBERON:0000479 denotes tissue
T72453 18525-18532 UBERON:0003215 denotes alveoli
T83892 18698-18710 UBERON:0005169 denotes interstitial
T50871 18742-18750 UBERON:0003215 denotes alveolar
T65185 18751-18756 UBERON:0003037 denotes septa
T3448 18780-18786 UBERON:0003037 denotes septal
T58151 18787-18800 UBERON:0001981 denotes blood vessels
T66331 18846-18855 GO:0016020 denotes membranes
T96825 18870-18881 CL:0000771 denotes eosinophils
T62230 18936-18941 NCBITaxon:4751 denotes fungi
T54582 19420-19430 GO:0016265 denotes postmortem
T8919 19442-19450 SP_7 denotes COVID-19
T4529 19613-19621 SP_7 denotes COVID-19
T200 19709-19719 GO:0016265 denotes postmortem
T67683 19805-19814 UBERON:0002048 denotes pulmonary
T43328 19966-19970 UBERON:0002048 denotes lung
T86829 20038-20047 GO:0016020 denotes membranes
T8625 20597-20601 GO:0016265 denotes died
T78237 20735-20739 UBERON:0002048 denotes lung
T1261 20758-20763 NCBITaxon:10239 denotes viral
T15029 20779-20783 CHEBI:23888;CHEBI:23888 denotes drug
T10447 20959-20969 GO:0016265 denotes postmortem
T28202 21383-21391 UBERON:0003215 denotes alveolar
T67241 21392-21402 UBERON:0000483 denotes epithelial
T46717 21424-21434 UBERON:0000483 denotes epithelial
T39595 21468-21474 UBERON:0001969 denotes plasma
T44394 21567-21577 CL:0000057 denotes fibroblast
T2531 21594-21611 UBERON:0002384 denotes connective tissue
T32839 21616-21626 CL:0000057 denotes fibroblast
T79081 21659-21667 UBERON:0003215 denotes alveolar
T12939 21684-21695 UBERON:0001986 denotes endothelial
T13532 21711-21715 PR:000017284 denotes VEGF
T23839 21721-21726 PR:000007489 denotes basic
T30589 21727-21737 PR:000007489;CL:0000057 denotes fibroblast
T89725 21738-21751 PR:000007489 denotes growth factor
T29099 21753-21757 PR:000007489 denotes bFGF
T15310 21818-21827 GO:0010467 denotes expressed
T77776 21919-21923 G_3;PG_10;PR:000003622 denotes ACE2
T89521 21978-21988 SP_7 denotes SARS-CoV-2
T94964 21998-22006 UBERON:0003215;CL:0002063 denotes alveolar
T33665 22007-22020 CL:0002063 denotes type II cells
T65073 22043-22047 G_3;PG_10;PR:000003622 denotes ACE2
T27805 22055-22063 GO:0016020 denotes membrane
T1917 22065-22070 G_3;PG_10;PR:000003622 denotes ACE 2
T72517 22102-22107 PR:000013883 denotes renin
T33758 22155-22159 G_3;PG_10;PR:000003622 denotes ACE2
T15813 22214-22226 CL:0000057 denotes Fibroblastic
T57972 22242-22246 G_3;PG_10;PR:000003622 denotes ACE2
T76591 22268-22278 GO:0065007 denotes regulating
T13299 22328-22332 G_3;PG_10;PR:000003622 denotes ACE2
T40299 22361-22365 PR:000014459;SP_10 denotes SARS
T99881 22375-22379 G_3;PG_10;PR:000003622 denotes ACE2
T48386 22421-22428 SP_7 denotes COVID19
T31074 22580-22591 CHEBI:3638;DG_10;CHEBI:3638 denotes chloroquine
T67713 22704-22715 CHEBI:3638;DG_10;CHEBI:3638 denotes chloroquine
T74030 22739-22753 UBERON:0004535 denotes cardiovascular
T32076 22765-22774 UBERON:0002048 denotes pulmonary
T44763 22794-22798 CHEBI:23888;CHEBI:23888 denotes drug
T34378 22807-22819 UBERON:0005169 denotes interstitial
T84677 22820-22824 UBERON:0002048 denotes lung
T50624 23022-23027 UBERON:0001443 denotes chest
T95144 23563-23571 CHEBI:35341;CHEBI:35341 denotes steroids
T65216 23634-23644 SP_7 denotes SARS-CoV-2
T70513 23700-23707 SP_7 denotes COVID19
T50661 23949-23956 CHEBI:35341;CHEBI:35341 denotes steroid
T1274 24005-24014 UBERON:0002048 denotes pulmonary
T20843 24239-24250 UBERON:0001004 denotes respiratory
T97014 24294-24302 SP_7 denotes COVID-19
T17239 24314-24323 UBERON:0002048 denotes pulmonary
T71303 24516-24520 UBERON:0002048 denotes lung
T6825 24543-24551 UBERON:0003215 denotes alveolar
T25322 24552-24564 UBERON:0005169 denotes interstitial
T67396 24579-24584 NCBITaxon:10239;GO:0006260 denotes viral
T64030 24585-24596 GO:0006260 denotes replication
T44953 24647-24660 CL:0000084 denotes T-lymphocytes
T10487 24661-24664 PR:000001004 denotes CD4
T16256 24667-24668 CL:0000084 denotes T
T88507 24679-24686 CL:0000084 denotes T cells
T44754 24720-24724 UBERON:0002048 denotes lung
T6142 24725-24731 UBERON:0000479 denotes tissue
T56681 24909-24917 SP_7 denotes COVID-19
T69906 24979-24987 SP_7 denotes COVID-19
T31928 24999-25008 UBERON:0002048 denotes pulmonary
T12557 25060-25065 UBERON:0006314 denotes fluid
T71459 25066-25079 CHEBI:27680;CHEBI:27680 denotes galactomannan
T45354 25208-25212 UBERON:0002048 denotes lung
T56788 25299-25308 UBERON:0002048 denotes pulmonary
T54417 25508-25514 GO:0016265 denotes deaths
T81328 25565-25574 NCBITaxon:2 denotes bacterial
T86074 25768-25779 UBERON:0001004 denotes respiratory
T651 25964-25971 CHEBI:35341;CHEBI:35341 denotes steroid
T4174 26086-26095 UBERON:0002048 denotes pulmonary
T25225 26096-26102 UBERON:0000479 denotes tissue
T44391 26221-26231 GO:0016265 denotes postmortem
T63222 26245-26255 GO:0016265 denotes postmortem
T93307 26274-26278 UBERON:0002048 denotes lung
T69193 26437-26445 SP_7 denotes COVID-19
T73836 26529-26539 SP_7 denotes SARS-CoV-2
T38538 26659-26668 UBERON:0002048 denotes pulmonary
T75291 26694-26702 SP_7 denotes COVID-19
T46959 26765-26773 SP_7 denotes COVID-19
T12903 26918-26923 UBERON:0001443 denotes chest
T33307 27060-27070 GO:0016265 denotes postmortem
T59699 27132-27146 CHEBI:50858;CHEBI:50858 denotes corticosteroid
T52737 27158-27166 SP_7 denotes COVID-19
T52895 27263-27270 SP_7 denotes COVID19
T55272 27385-27392 SP_7 denotes COVID19
T20603 27404-27413 UBERON:0002048 denotes pulmonary

2_test

Id Subject Object Predicate Lexical cue
32674001-32109013-58631465 183-184 32109013 denotes 1
32674001-32320003-58631466 193-194 32320003 denotes 3
32674001-32091533-58631467 198-199 32091533 denotes 4
32674001-32228035-58631468 627-628 32228035 denotes 5
32674001-32105637-58631469 818-819 32105637 denotes 7
32674001-32381264-58631470 1080-1081 32381264 denotes 8
32674001-32085846-58631471 19543-19545 32085846 denotes 17
32674001-32275742-58631472 19549-19551 32275742 denotes 18
32674001-21178022-58631473 20862-20864 21178022 denotes 22
32674001-27867585-58631474 20917-20919 27867585 denotes 25
32674001-32192578-58631475 21548-21550 32192578 denotes 27
32674001-32283152-58631476 21551-21553 32283152 denotes 28
32674001-11793374-58631477 21888-21890 11793374 denotes 29
32674001-32264791-58631478 22181-22183 32264791 denotes 30
32674001-26938051-58631479 22299-22301 26938051 denotes 31
32674001-30076119-58631480 24286-24288 30076119 denotes 33
32674001-32192578-58631481 24688-24690 32192578 denotes 27
32674001-32171076-58631482 24775-24777 32171076 denotes 34
32674001-32339350-58631483 24885-24887 32339350 denotes 35
32674001-12070604-58631484 26381-26383 12070604 denotes 37