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PMC:7340597 / 19120-20205 JSONTXT

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LitCovid_Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T22 338-340 https://glytoucan.org/Structures/Glycans/G93424OB denotes GM

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T113 457-462 Body_part denotes Chest http://purl.org/sig/ont/fma/fma9576
T114 817-821 Body_part denotes head http://purl.org/sig/ont/fma/fma7154

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T67 457-462 Body_part denotes Chest http://purl.obolibrary.org/obo/UBERON_0001443
T68 817-821 Body_part denotes head http://purl.obolibrary.org/obo/UBERON_0000033

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
450 144-151 Species denotes Patient Tax:9606
451 354-375 Species denotes Aspergillus fumigatus Tax:746128
452 744-751 Species denotes patient Tax:9606
453 1032-1039 Species denotes patient Tax:9606
454 380-392 Species denotes Enterococcus Tax:1351
455 338-340 Chemical denotes GM MESH:C012990
456 46-69 Disease denotes cardiopulmonary disease MESH:D006323
457 124-129 Disease denotes fever MESH:D005334
458 134-142 Disease denotes dyspnoea MESH:D004417
459 285-294 Disease denotes infection MESH:D007239
460 495-511 Disease denotes pulmonary emboli MESH:D011655
461 839-868 Disease denotes bilateral cerebellar ischemia MESH:D007511

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T161 46-69 Disease denotes cardiopulmonary disease http://purl.obolibrary.org/obo/MONDO_0004596
T162 285-294 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T163 712-726 Disease denotes bronchiectasis http://purl.obolibrary.org/obo/MONDO_0004822
T164 860-868 Disease denotes ischemia http://purl.obolibrary.org/obo/MONDO_0005053

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T169 0-1 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T170 14-18 http://purl.obolibrary.org/obo/UBERON_0003101 denotes male
T171 14-18 http://www.ebi.ac.uk/efo/EFO_0000970 denotes male
T172 98-99 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T173 327-328 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T174 457-462 http://www.ebi.ac.uk/efo/EFO_0000965 denotes Chest
T175 817-821 http://purl.obolibrary.org/obo/UBERON_0000033 denotes head
T176 817-821 http://www.ebi.ac.uk/efo/EFO_0000964 denotes head

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T103 14-18 Chemical denotes male http://purl.obolibrary.org/obo/CHEBI_30780
T104 92-94 Chemical denotes ED http://purl.obolibrary.org/obo/CHEBI_73503
T105 296-299 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T106 338-340 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T108 793-801 Chemical denotes sedative http://purl.obolibrary.org/obo/CHEBI_35717

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T49 124-129 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T50 134-142 Phenotype denotes dyspnoea http://purl.obolibrary.org/obo/HP_0002094
T51 712-726 Phenotype denotes bronchiectasis http://purl.obolibrary.org/obo/HP_0002110

LitCovid-PD-GlycoEpitope

Id Subject Object Predicate Lexical cue glyco_epitope_db_id
T20 338-340 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T162 0-143 Sentence denotes A 68-year old male without medical history of cardiopulmonary disease, was presented at the ED in a critical condition with fever and dyspnoea.
T163 144-263 Sentence denotes Patient was in need of endotracheal intubation and mechanical ventilation in prone position to improve his oxygenation.
T164 264-401 Sentence denotes To exclude secondary infection, BAL was performed and revealed a positive GM and cultured Aspergillus fumigatus and Enterococcus faecium.
T165 402-456 Sentence denotes Antifungal therapy was added to his treatment regimen.
T166 457-651 Sentence denotes Chest CT-angiography showed segmental pulmonary emboli along with extensive bilateral areas of ground-glass opacity with reticulation and multiple patchy non-dependant peripheral consolidations.
T167 652-739 Sentence denotes In contrast to normal areas, the abnormal areas showed mild bronchiectasis (Fig. 1-4A).
T168 740-813 Sentence denotes The patient remained unresponsive after cessation of sedative medication.
T169 814-904 Sentence denotes CT head showed extensive bilateral cerebellar ischemia with small haemorrhagic components.
T170 905-1027 Sentence denotes After three weeks of mechanical ventilation his respiratory status worsened and treatment was ended due to poor prognosis.
T171 1028-1085 Sentence denotes The patient passed away 21 days after hospital admission.

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T31499 167-179 UBERON:0001852 denotes endotracheal
T16403 251-262 GO:0015671 denotes oxygenation
T14517 354-375 NCBITaxon:746128 denotes Aspergillus fumigatus
T4434 380-400 NCBITaxon:1352 denotes Enterococcus faecium
T32949 495-504 UBERON:0002048 denotes pulmonary
T23048 817-821 UBERON:0000033 denotes head
T39092 849-859 UBERON:0002037 denotes cerebellar
T74431 953-964 UBERON:0001004 denotes respiratory