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PMC:7326463 / 112-903 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 172-187 Body_part denotes lung parenchyma http://purl.org/sig/ont/fma/fma27360

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 172-187 Body_part denotes lung parenchyma http://purl.obolibrary.org/obo/UBERON_0008946
T2 172-176 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T3 177-187 Body_part denotes parenchyma http://purl.obolibrary.org/obo/UBERON_0000353

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T3 23-70 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T4 23-56 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T5 72-80 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T6 124-132 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T7 138-163 Disease denotes acute respiratory failure http://purl.obolibrary.org/obo/MONDO_0001208|http://purl.obolibrary.org/obo/MONDO_0021113
T9 224-234 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T10 364-386 Disease denotes invasive aspergillosis http://purl.obolibrary.org/obo/MONDO_0000240
T11 373-386 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T12 453-462 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T13 466-474 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T14 496-529 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T15 595-617 Disease denotes invasive aspergillosis http://purl.obolibrary.org/obo/MONDO_0000240
T16 604-617 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T17 675-683 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T18 769-777 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 172-176 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T2 172-176 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T3 387-390 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T4 585-586 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 144-163 Phenotype denotes respiratory failure http://purl.obolibrary.org/obo/HP_0002878
T2 210-234 Phenotype denotes opportunistic infections http://purl.obolibrary.org/obo/HP_0031690

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
28 0-8 Species denotes Patients Tax:9606
29 23-70 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049
30 72-82 Species denotes SARS-CoV-2 Tax:2697049
31 354-362 Species denotes patients Tax:9606
32 430-438 Species denotes patients Tax:9606
33 466-474 Species denotes SARS-CoV Tax:694009
34 655-662 Species denotes patient Tax:9606
35 778-786 Species denotes patients Tax:9606
36 9-17 Disease denotes infected MESH:D007239
37 103-122 Disease denotes coronavirus disease MESH:D018352
38 124-132 Disease denotes COVID-19 MESH:C000657245
39 144-163 Disease denotes respiratory failure MESH:D012131
40 210-234 Disease denotes opportunistic infections MESH:D009894
41 364-386 Disease denotes invasive aspergillosis MESH:D055744
42 439-447 Disease denotes infected MESH:D007239
43 496-529 Disease denotes severe acute respiratory syndrome MESH:D045169
44 595-617 Disease denotes invasive aspergillosis MESH:D055744
45 640-654 Disease denotes critically ill MESH:D016638
46 675-683 Disease denotes COVID-19 MESH:C000657245
47 769-777 Disease denotes COVID-19 MESH:C000657245

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T3 0-164 Sentence denotes Patients infected with severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) may develop severe coronavirus disease (COVID-19) and acute respiratory failure.
T4 165-246 Sentence denotes As the lung parenchyma is seriously damaged, opportunistic infections are feared.
T5 247-553 Sentence denotes While invasive pulmonary mould superinfections are usually diagnosed primarily in highly immunocompromised patients, invasive aspergillosis has also been described in immunocompetent patients infected with influenza or SARS-CoV (responsible for the severe acute respiratory syndrome outbreak in 2002–2003).
T6 554-688 Sentence denotes Moreover, we recently reported a case of invasive aspergillosis in an immunocompetent critically ill patient with severe COVID-19 [1].
T7 689-791 Sentence denotes Another study also suggested an increased risk of Aspergillus superinfection in COVID-19 patients [2].

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T3 23-35 SP_7 denotes severe acute
T4 36-47 SP_7;UBERON:0001004 denotes respiratory
T5 48-70 SP_7 denotes syndrome coronavirus 2
T6 72-82 SP_7 denotes SARS-CoV-2
T7 103-114 NCBITaxon:11118 denotes coronavirus
T8 124-132 SP_7 denotes COVID-19
T9 144-155 UBERON:0001004 denotes respiratory
T10 172-187 UBERON:0008946 denotes lung parenchyma
T11 262-271 UBERON:0002048 denotes pulmonary
T12 466-474 SP_10 denotes SARS-CoV
T13 509-520 UBERON:0001004 denotes respiratory
T14 675-683 SP_7 denotes COVID-19
T15 739-750 NCBITaxon:5052 denotes Aspergillus
T16 769-777 SP_7 denotes COVID-19
T32209 23-35 SP_7 denotes severe acute
T19930 36-47 SP_7;UBERON:0001004 denotes respiratory
T63040 48-70 SP_7 denotes syndrome coronavirus 2
T63916 72-82 SP_7 denotes SARS-CoV-2
T99154 103-114 NCBITaxon:11118 denotes coronavirus
T72851 124-132 SP_7 denotes COVID-19
T97997 144-155 UBERON:0001004 denotes respiratory
T16258 172-187 UBERON:0008946 denotes lung parenchyma
T31204 262-271 UBERON:0002048 denotes pulmonary
T76318 466-474 SP_10 denotes SARS-CoV
T48167 509-520 UBERON:0001004 denotes respiratory
T61071 675-683 SP_7 denotes COVID-19
T78957 739-750 NCBITaxon:5052 denotes Aspergillus
T68889 769-777 SP_7 denotes COVID-19