PMC:7326463 / 112-903
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T1 | 172-187 | Body_part | denotes | lung parenchyma | http://purl.org/sig/ont/fma/fma27360 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T1 | 172-187 | Body_part | denotes | lung parenchyma | http://purl.obolibrary.org/obo/UBERON_0008946 |
| T2 | 172-176 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
| T3 | 177-187 | Body_part | denotes | parenchyma | http://purl.obolibrary.org/obo/UBERON_0000353 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T3 | 23-70 | Disease | denotes | severe acute respiratory syndrome coronavirus 2 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T4 | 23-56 | Disease | denotes | severe acute respiratory syndrome | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T5 | 72-80 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T6 | 124-132 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T7 | 138-163 | Disease | denotes | acute respiratory failure | http://purl.obolibrary.org/obo/MONDO_0001208|http://purl.obolibrary.org/obo/MONDO_0021113 |
| T9 | 224-234 | Disease | denotes | infections | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T10 | 364-386 | Disease | denotes | invasive aspergillosis | http://purl.obolibrary.org/obo/MONDO_0000240 |
| T11 | 373-386 | Disease | denotes | aspergillosis | http://purl.obolibrary.org/obo/MONDO_0005657 |
| T12 | 453-462 | Disease | denotes | influenza | http://purl.obolibrary.org/obo/MONDO_0005812 |
| T13 | 466-474 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T14 | 496-529 | Disease | denotes | severe acute respiratory syndrome | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T15 | 595-617 | Disease | denotes | invasive aspergillosis | http://purl.obolibrary.org/obo/MONDO_0000240 |
| T16 | 604-617 | Disease | denotes | aspergillosis | http://purl.obolibrary.org/obo/MONDO_0005657 |
| T17 | 675-683 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T18 | 769-777 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 172-176 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
| T2 | 172-176 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
| T3 | 387-390 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T4 | 585-586 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T1 | 144-163 | Phenotype | denotes | respiratory failure | http://purl.obolibrary.org/obo/HP_0002878 |
| T2 | 210-234 | Phenotype | denotes | opportunistic infections | http://purl.obolibrary.org/obo/HP_0031690 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 28 | 0-8 | Species | denotes | Patients | Tax:9606 |
| 29 | 23-70 | Species | denotes | severe acute respiratory syndrome coronavirus 2 | Tax:2697049 |
| 30 | 72-82 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 31 | 354-362 | Species | denotes | patients | Tax:9606 |
| 32 | 430-438 | Species | denotes | patients | Tax:9606 |
| 33 | 466-474 | Species | denotes | SARS-CoV | Tax:694009 |
| 34 | 655-662 | Species | denotes | patient | Tax:9606 |
| 35 | 778-786 | Species | denotes | patients | Tax:9606 |
| 36 | 9-17 | Disease | denotes | infected | MESH:D007239 |
| 37 | 103-122 | Disease | denotes | coronavirus disease | MESH:D018352 |
| 38 | 124-132 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 39 | 144-163 | Disease | denotes | respiratory failure | MESH:D012131 |
| 40 | 210-234 | Disease | denotes | opportunistic infections | MESH:D009894 |
| 41 | 364-386 | Disease | denotes | invasive aspergillosis | MESH:D055744 |
| 42 | 439-447 | Disease | denotes | infected | MESH:D007239 |
| 43 | 496-529 | Disease | denotes | severe acute respiratory syndrome | MESH:D045169 |
| 44 | 595-617 | Disease | denotes | invasive aspergillosis | MESH:D055744 |
| 45 | 640-654 | Disease | denotes | critically ill | MESH:D016638 |
| 46 | 675-683 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 47 | 769-777 | Disease | denotes | COVID-19 | MESH:C000657245 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T3 | 0-164 | Sentence | denotes | Patients infected with severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) may develop severe coronavirus disease (COVID-19) and acute respiratory failure. |
| T4 | 165-246 | Sentence | denotes | As the lung parenchyma is seriously damaged, opportunistic infections are feared. |
| T5 | 247-553 | Sentence | denotes | While invasive pulmonary mould superinfections are usually diagnosed primarily in highly immunocompromised patients, invasive aspergillosis has also been described in immunocompetent patients infected with influenza or SARS-CoV (responsible for the severe acute respiratory syndrome outbreak in 2002–2003). |
| T6 | 554-688 | Sentence | denotes | Moreover, we recently reported a case of invasive aspergillosis in an immunocompetent critically ill patient with severe COVID-19 [1]. |
| T7 | 689-791 | Sentence | denotes | Another study also suggested an increased risk of Aspergillus superinfection in COVID-19 patients [2]. |
LitCovid-PMC-OGER-BB
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T3 | 23-35 | SP_7 | denotes | severe acute |
| T4 | 36-47 | SP_7;UBERON:0001004 | denotes | respiratory |
| T5 | 48-70 | SP_7 | denotes | syndrome coronavirus 2 |
| T6 | 72-82 | SP_7 | denotes | SARS-CoV-2 |
| T7 | 103-114 | NCBITaxon:11118 | denotes | coronavirus |
| T8 | 124-132 | SP_7 | denotes | COVID-19 |
| T9 | 144-155 | UBERON:0001004 | denotes | respiratory |
| T10 | 172-187 | UBERON:0008946 | denotes | lung parenchyma |
| T11 | 262-271 | UBERON:0002048 | denotes | pulmonary |
| T12 | 466-474 | SP_10 | denotes | SARS-CoV |
| T13 | 509-520 | UBERON:0001004 | denotes | respiratory |
| T14 | 675-683 | SP_7 | denotes | COVID-19 |
| T15 | 739-750 | NCBITaxon:5052 | denotes | Aspergillus |
| T16 | 769-777 | SP_7 | denotes | COVID-19 |
| T32209 | 23-35 | SP_7 | denotes | severe acute |
| T19930 | 36-47 | SP_7;UBERON:0001004 | denotes | respiratory |
| T63040 | 48-70 | SP_7 | denotes | syndrome coronavirus 2 |
| T63916 | 72-82 | SP_7 | denotes | SARS-CoV-2 |
| T99154 | 103-114 | NCBITaxon:11118 | denotes | coronavirus |
| T72851 | 124-132 | SP_7 | denotes | COVID-19 |
| T97997 | 144-155 | UBERON:0001004 | denotes | respiratory |
| T16258 | 172-187 | UBERON:0008946 | denotes | lung parenchyma |
| T31204 | 262-271 | UBERON:0002048 | denotes | pulmonary |
| T76318 | 466-474 | SP_10 | denotes | SARS-CoV |
| T48167 | 509-520 | UBERON:0001004 | denotes | respiratory |
| T61071 | 675-683 | SP_7 | denotes | COVID-19 |
| T78957 | 739-750 | NCBITaxon:5052 | denotes | Aspergillus |
| T68889 | 769-777 | SP_7 | denotes | COVID-19 |