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LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T1 66-74 SP_7 denotes Covid-19
T2 922-930 SP_7 denotes Covid-19
T3 1273-1278 NCBITaxon:10239 denotes virus
T4 2640-2648 SP_7 denotes Covid-19
T5 5066-5071 NCBITaxon:10239 denotes viral
T6 5620-5631 GO:0006412 denotes translation
T7 5814-5822 SP_7 denotes Covid-19
T8 6240-6250 NCBITaxon:1 denotes individual
T9 6274-6282 SP_7 denotes Covid-19
T10 6757-6772 GO:0001709 denotes decision-making
T32403 66-74 SP_7 denotes Covid-19
T99696 922-930 SP_7 denotes Covid-19
T84588 1273-1278 NCBITaxon:10239 denotes virus
T44289 2640-2648 SP_7 denotes Covid-19
T67160 5066-5071 NCBITaxon:10239 denotes viral
T69327 5620-5631 GO:0006412 denotes translation
T17269 5814-5822 SP_7 denotes Covid-19
T84479 6240-6250 NCBITaxon:1 denotes individual
T64399 6274-6282 SP_7 denotes Covid-19
T45053 6757-6772 GO:0001709 denotes decision-making

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 716-719 Disease denotes EBM http://purl.obolibrary.org/obo/MONDO_0010540
T2 2308-2311 Disease denotes EBM http://purl.obolibrary.org/obo/MONDO_0010540
T3 2452-2455 Disease denotes EBM http://purl.obolibrary.org/obo/MONDO_0010540
T4 4450-4453 Disease denotes EBM http://purl.obolibrary.org/obo/MONDO_0010540
T5 5066-5079 Disease denotes viral disease http://purl.obolibrary.org/obo/MONDO_0005108
T6 6354-6357 Disease denotes EBM http://purl.obolibrary.org/obo/MONDO_0010540

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 76-77 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T2 412-413 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T3 868-869 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T4 1155-1159 http://purl.obolibrary.org/obo/CLO_0008416 denotes peer
T5 1155-1159 http://purl.obolibrary.org/obo/CLO_0050081 denotes peer
T6 1273-1278 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T7 1520-1523 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T8 1529-1530 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T9 1778-1790 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T10 2086-2091 http://purl.obolibrary.org/obo/UBERON_0007688 denotes field
T11 2277-2282 http://purl.obolibrary.org/obo/UBERON_0007688 denotes field
T12 2388-2389 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T13 2477-2478 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T14 2585-2586 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T15 2986-2987 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T16 3155-3167 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T17 3359-3371 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T18 3463-3475 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T19 4601-4602 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T20 4792-4793 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T21 5408-5409 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T22 6203-6204 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T23 6532-6535 http://purl.obolibrary.org/obo/CLO_0051582 denotes has

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 706-714 Chemical denotes medicine http://purl.obolibrary.org/obo/CHEBI_23888
T2 4324-4332 Chemical denotes medicine http://purl.obolibrary.org/obo/CHEBI_23888

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 4401-4409 http://purl.obolibrary.org/obo/GO_0015297 denotes exchange
T2 5620-5631 http://purl.obolibrary.org/obo/GO_0006412 denotes translation

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-75 Sentence denotes Designing of clinical information update system for clinicians on Covid-19:
T2 76-88 Sentence denotes A commentary
T3 90-102 Sentence denotes Introduction
T4 103-349 Sentence denotes The valid clinical information can help health-care providers to make the right decisions and enable them to provide better services to patients.[1] In addition, valid clinical information helps clinicians to be more confident in their decisions.
T5 350-666 Sentence denotes Therefore, access to and use of valid clinical information in a specific protocol format in addition to guarantee health-care specialists and patients' rights can lead to lower costs for health-care centers and increase the satisfaction of recipients (patients) and accuracy of clinicians in the therapeutic process.
T6 667-914 Sentence denotes Given the importance of evidence-based medicine (EBM) and this fact that the outcome of this process will be clinical judgment, therefore, the use of clinical information for clinical professionals as a clinical judgment feed source is inevitable.
T7 915-1227 Sentence denotes In the Covid-19 crisis, clinicians are less likely to use the latest scientific evidence in diagnostic and therapeutic processes because of specific conditions such as lack of time, workload, insufficient time to read scientific papers and peer experiences, and lack of on-site information technology facilities.
T8 1228-1385 Sentence denotes However, given the unknown dimensions of the virus, clinical professionals' accessibility and their use of the latest scientific findings are very important.
T9 1386-1636 Sentence denotes For example, some countries have already shared the results of its experiences and scientific findings with other countries, and this has been a crucial factor in preventing, diagnosing, and even treating large numbers of patients in other countries.
T10 1637-1871 Sentence denotes By examining the articles published in databases such as PubMed, Web of Science, and Scopus and even protocols developed by the World Health Organization and the countries Health Ministry, we can see the speed of articles publication.
T11 1872-1985 Sentence denotes What should be done now to resolve updating issues of physician's clinical information instantly (in the moment)?
T12 1986-2247 Sentence denotes It should be said that due to the increasing speed of clinical information production in the health field, clinical professionals need to access the valid clinical information in the shortest possible time to make clinical decision with the least complications.
T13 2248-2514 Sentence denotes To this purpose, the medical field is moving rapidly toward EBM and in addition to physicians' clinical information literacy skills,[23] as a requirement and prerequisites for effective implementation of EBM process, it requires a clinical information update system.
T14 2515-2649 Sentence denotes Based on this need, the authors of this article propose the designing a clinical information update system for clinicians on Covid-19.
T15 2651-2709 Sentence denotes Proposed Clinical Information Update System for Clinicians
T16 2710-2872 Sentence denotes The system can be designed based on the capabilities of smartphones as well as applications and new technologies such as social media and Internet of things, etc.
T17 2873-2966 Sentence denotes Using the capabilities of technologies, it is possible to share clinical information quickly.
T18 2967-3233 Sentence denotes The system is such a way that allows sharing and exchanging of information between clinical practitioners and anticipated centers such as each country Ministry of Health, the World Health Organization, and even evidence-based databases simultaneous and asynchronous.
T19 3234-3300 Sentence denotes These anticipated information centers are divided into two groups:
T20 3302-3371 Sentence denotes Countries ministry of health as well as the World Health Organization
T21 3372-3791 Sentence denotes To implement this system, the Ministry of Health and Medical Education or the World Health Organization should set up working groups in these institutions and identify the latest scientific findings from reliable sources and provide clinicians in hospitals with these information compactly (key points or highlights) simultaneously and asynchronously through this system and also answer clinical professional questions.
T22 3792-3929 Sentence denotes Clinical librarian can assist in searching for the latest scientific evidence and clinical professionals can help in resource evaluation.
T23 3930-4133 Sentence denotes The system will be able to receive questions and answers between these centers as well as clinicians in the hospital synchronize and asynchronous and be able to easily share text, audio, and even images.
T24 4134-4307 Sentence denotes This system can be equipped with the frequently asked questions option to save time for system staff and clinical professionals so they can prioritize questions and answers.
T25 4309-4342 Sentence denotes Evidence-based medicine databases
T26 4343-4449 Sentence denotes To implement this system, hardware and software needed to exchange and share information must be provided.
T27 4450-4739 Sentence denotes EBM databases (EBMDs) are databases that present evidence-based information in an accessible format and answer physicians' questions about patients in a specific method and the shortest possible time.[4] Nowadays, there are many EBMDs in the world which are used by clinical practitioners.
T28 4740-4932 Sentence denotes Some journals covered and indexed by databases have a part which called “Key Points or highlights,” sometimes in the text format and sometimes in audio format which is embedded in the article.
T29 4933-5299 Sentence denotes Therefore, databases should be revised over the time in case of acceptance and journal indexing standards and forced journals in the viral disease scope, to include this section (key points) which in times of crisis enables them to quickly share information with clinical experts around the world instead of the original article, which its reading is time consuming.
T30 5300-5391 Sentence denotes Through this method, only the key points of the article are sent to clinical professionals.
T31 5392-5538 Sentence denotes However, having a text or audio format allows clinical practitioners to select the desired format in the clinical round appropriate the situation.
T32 5539-5702 Sentence denotes Other features that can be anticipated for this system include the capability of translation the messages as well as information between clinicians simultaneously.
T33 5703-5866 Sentence denotes This system will also be able to continuously send news, abstracts, and key points of published articles about Covid-19 to clinical professionals after the crisis.
T34 5867-5993 Sentence denotes Confidentiality of information, the user-friendliness of the interface, and the ease of use are other features of this system.
T35 5995-6005 Sentence denotes Conclusion
T36 6006-6146 Sentence denotes The use of clinical information is important because it contributes to the prevention, diagnosis, treatment, and rehabilitation of patients.
T37 6147-6251 Sentence denotes Clinical information is valuable when it is provided at a right time, right place, and right individual.
T38 6252-6340 Sentence denotes In crisis such as the Covid-19, update of physicians' clinical information is difficult.
T39 6341-6431 Sentence denotes Conventional EBM procedures that occur in normal conditions in hospitals are not possible.
T40 6432-6511 Sentence denotes Therefore, IT-based methods and intelligent information systems should be used.
T41 6512-6819 Sentence denotes The proposed system has various benefits such as speeding up clinical information sharing and reducing the gap between the production of clinical information and its use, using the collective wisdom of clinical practitioners around the world in decision-making, sharing guidelines and therapeutic protocols.
T42 6820-7030 Sentence denotes Also, utilizing new information technologies capabilities to access and share clinical information, the possibility of simultaneously questioning between clinical professionals are other advantages this system.
T43 7031-7311 Sentence denotes In addition. revise journals and evidence-based databases to equip clients with access to clinical information, increasing cooperation and scientific exchanges between countries, and quick-decision making by physicians in diagnosis and treatmentare other beneifits of this system.
T44 7313-7346 Sentence denotes Financial support and sponsorship
T45 7347-7351 Sentence denotes Nil.
T46 7353-7374 Sentence denotes Conflicts of interest
T47 7375-7410 Sentence denotes There are no conflicts of interest.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1 66-74 Disease denotes Covid-19 MESH:C000657245
8 239-247 Species denotes patients Tax:9606
9 492-500 Species denotes patients Tax:9606
10 602-610 Species denotes patients Tax:9606
11 1608-1616 Species denotes patients Tax:9606
12 922-930 Disease denotes Covid-19 MESH:C000657245
13 2640-2648 Disease denotes Covid-19 MESH:C000657245
17 4589-4597 Species denotes patients Tax:9606
18 5066-5079 Disease denotes viral disease MESH:D001102
19 5814-5822 Disease denotes Covid-19 MESH:C000657245
22 6137-6145 Species denotes patients Tax:9606
23 6274-6282 Disease denotes Covid-19 MESH:C000657245

2_test

Id Subject Object Predicate Lexical cue
32642460-25517736-58941794 2381-2383 25517736 denotes 23
32642460-20401959-58941795 4651-4652 20401959 denotes 4