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PMC:7324763 / 33163-34790 JSONTXT

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LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T688 42-53 NCBITaxon:11118 denotes coronavirus
T689 80-94 CL:0000623 denotes Natural Killer
T690 118-129 NCBITaxon:1 denotes individuals
T691 140-150 SP_7 denotes SARS-CoV-2
T692 185-190 NCBITaxon:10239 denotes viral
T693 207-217 GO:0009986 denotes surface of
T694 375-384 GO:0006915 denotes apoptosis
T695 393-398 GO:0016265 denotes death
T696 418-426 GO:0042571 denotes antibody
T697 488-508 GO:0051904 denotes release of cytotoxic
T698 509-517 GO:0051904;GO:0009542 denotes granules
T699 555-562 NCBITaxon:10239 denotes virally
T700 582-595 GO:0030510 denotes modulation of
T701 600-606 UBERON:0002405 denotes immune
T702 657-663 GO:0045087 denotes innate
T703 664-670 GO:0045087;UBERON:0002405 denotes immune
T704 671-679 GO:0045087 denotes response
T705 701-711 SP_7 denotes SARS-CoV-2
T706 746-751 UBERON:0000170 denotes lungs
T707 777-788 NCBITaxon:1 denotes individuals
T708 860-870 SP_7 denotes SARS-CoV-2
T709 888-894 UBERON:0002405 denotes immune
T710 930-935 NCBITaxon:10239 denotes virus
T711 989-999 UBERON:0000483;CL:0000066 denotes epithelial
T712 1000-1005 CL:0000066 denotes cells
T713 1017-1023 UBERON:0002405;CL:0000738 denotes immune
T714 1024-1029 CL:0000738 denotes cells
T715 1031-1039 CL:0000576 denotes monocyte
T716 1040-1051 CL:0000235 denotes macrophages
T717 1056-1067 CL:0000775 denotes neutrophils
T718 1125-1131 UBERON:0002405 denotes immune
T719 1166-1171 UBERON:0000170 denotes lungs
T720 1234-1239 PR:000000017 denotes IFN-γ
T721 1320-1324 UBERON:0002048 denotes lung
T722 1348-1359 UBERON:0001004 denotes respiratory
T723 1459-1467 SP_7 denotes COVID-19
T724 1469-1479 SP_7 denotes SARS-CoV-2
T725 1576-1581 NCBITaxon:10239 denotes viral
T726 1615-1619 UBERON:0002048 denotes lung
T33103 42-53 NCBITaxon:11118 denotes coronavirus
T53807 80-94 CL:0000623 denotes Natural Killer
T46360 118-129 NCBITaxon:1 denotes individuals
T12656 140-150 SP_7 denotes SARS-CoV-2
T43041 185-190 NCBITaxon:10239 denotes viral
T47723 207-217 GO:0009986 denotes surface of
T14747 375-384 GO:0006915 denotes apoptosis
T62188 393-398 GO:0016265 denotes death
T91621 418-426 GO:0042571 denotes antibody
T82485 488-508 GO:0051904 denotes release of cytotoxic
T19320 509-517 GO:0051904;GO:0009542 denotes granules
T5239 555-562 NCBITaxon:10239 denotes virally
T91348 582-595 GO:0030510 denotes modulation of
T33786 600-606 UBERON:0002405 denotes immune
T93186 657-663 GO:0045087 denotes innate
T91482 664-670 GO:0045087;UBERON:0002405 denotes immune
T93822 671-679 GO:0045087 denotes response
T57266 701-711 SP_7 denotes SARS-CoV-2
T13608 746-751 UBERON:0000170 denotes lungs
T15680 777-788 NCBITaxon:1 denotes individuals
T90335 860-870 SP_7 denotes SARS-CoV-2
T39310 888-894 UBERON:0002405 denotes immune
T3589 930-935 NCBITaxon:10239 denotes virus
T14594 989-999 UBERON:0000483;CL:0000066 denotes epithelial
T69489 1000-1005 CL:0000066 denotes cells
T72524 1017-1023 UBERON:0002405;CL:0000738 denotes immune
T48246 1024-1029 CL:0000738 denotes cells
T63161 1031-1039 CL:0000576 denotes monocyte
T81499 1040-1051 CL:0000235 denotes macrophages
T94629 1056-1067 CL:0000775 denotes neutrophils
T38783 1125-1131 UBERON:0002405 denotes immune
T43649 1166-1171 UBERON:0000170 denotes lungs
T83079 1234-1239 PR:000000017 denotes IFN-γ
T10457 1320-1324 UBERON:0002048 denotes lung
T25194 1348-1359 UBERON:0001004 denotes respiratory
T34166 1459-1467 SP_7 denotes COVID-19
T89117 1469-1479 SP_7 denotes SARS-CoV-2
T49115 1576-1581 NCBITaxon:10239 denotes viral
T20698 1615-1619 UBERON:0002048 denotes lung

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T442 26-34 Body_part denotes NK cells http://purl.org/sig/ont/fma/fma63147
T443 29-34 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T444 100-105 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T445 160-165 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T446 191-199 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T447 227-232 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T448 256-265 Body_part denotes cytokines http://purl.org/sig/ont/fma/fma84050
T449 270-280 Body_part denotes chemokines http://purl.org/sig/ont/fma/fma241981
T450 322-327 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T451 418-426 Body_part denotes antibody http://purl.org/sig/ont/fma/fma62871
T452 437-441 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T453 572-577 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T454 624-632 Body_part denotes cytokine http://purl.org/sig/ont/fma/fma84050
T455 746-751 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T456 812-820 Body_part denotes NK cells http://purl.org/sig/ont/fma/fma63147
T457 815-820 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T458 989-1005 Body_part denotes epithelial cells http://purl.org/sig/ont/fma/fma66768
T459 1000-1005 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T460 1024-1029 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T461 1031-1039 Body_part denotes monocyte http://purl.org/sig/ont/fma/fma62864
T462 1040-1051 Body_part denotes macrophages http://purl.org/sig/ont/fma/fma63261
T463 1056-1067 Body_part denotes neutrophils http://purl.org/sig/ont/fma/fma62860
T464 1077-1086 Body_part denotes cytokines http://purl.org/sig/ont/fma/fma84050
T465 1092-1102 Body_part denotes chemokines http://purl.org/sig/ont/fma/fma241981
T466 1132-1137 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T467 1149-1157 Body_part denotes NK cells http://purl.org/sig/ont/fma/fma63147
T468 1152-1157 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T469 1166-1171 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T470 1211-1219 Body_part denotes cytokine http://purl.org/sig/ont/fma/fma84050
T471 1320-1324 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T472 1517-1524 Body_part denotes NK cell http://purl.org/sig/ont/fma/fma63147
T473 1520-1524 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T474 1615-1619 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T39 1320-1324 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T40 1615-1619 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T258 140-148 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T259 140-144 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T260 305-314 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T261 465-469 Disease denotes ADCC http://purl.obolibrary.org/obo/MONDO_0008734
T262 701-709 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T263 701-705 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T264 712-721 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T265 860-868 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T266 860-864 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T267 871-880 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T268 1314-1331 Disease denotes acute lung injury http://purl.obolibrary.org/obo/MONDO_0006502|http://purl.obolibrary.org/obo/MONDO_0015796
T270 1325-1331 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T271 1333-1336 Disease denotes ALI http://purl.obolibrary.org/obo/MONDO_0006502
T272 1342-1377 Disease denotes acute respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0006502
T273 1348-1377 Disease denotes respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0009971
T274 1379-1383 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T275 1459-1467 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T276 1469-1477 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T277 1469-1473 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T278 1480-1489 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T456 26-34 http://purl.obolibrary.org/obo/CL_0000623 denotes NK cells
T457 69-70 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T458 95-105 http://purl.obolibrary.org/obo/CL_0000623 denotes (NK) cells
T459 160-165 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T460 227-232 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T461 322-327 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T462 437-441 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T463 572-577 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T464 746-751 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T465 764-765 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T466 812-820 http://purl.obolibrary.org/obo/CL_0000623 denotes NK cells
T467 930-935 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T468 989-999 http://purl.obolibrary.org/obo/CL_0000066 denotes epithelial
T469 1000-1005 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T470 1024-1029 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T471 1031-1039 http://purl.obolibrary.org/obo/CL_0000576 denotes monocyte
T472 1132-1137 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T473 1149-1157 http://purl.obolibrary.org/obo/CL_0000623 denotes NK cells
T474 1166-1171 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T475 1209-1210 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T476 1320-1324 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T477 1320-1324 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T478 1517-1524 http://purl.obolibrary.org/obo/CL_0000623 denotes NK cell
T479 1615-1619 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T480 1615-1619 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T103 191-199 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T104 1282-1290 Chemical denotes catalyst http://purl.obolibrary.org/obo/CHEBI_35223

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1014 1234-1239 Gene denotes IFN-γ Gene:3458
1015 42-53 Species denotes coronavirus Tax:11118
1016 736-743 Species denotes patient Tax:9606
1017 140-159 Disease denotes SARS-CoV-2 infected MESH:C000657245
1018 218-226 Disease denotes infected MESH:D007239
1019 305-314 Disease denotes infection MESH:D007239
1020 393-398 Disease denotes death MESH:D003643
1021 451-463 Disease denotes cytotoxicity MESH:D064420
1022 563-571 Disease denotes infected MESH:D007239
1023 701-721 Disease denotes SARS-CoV-2 infection MESH:C000657245
1024 798-811 Disease denotes dysfunctional MESH:D009461
1025 860-880 Disease denotes SARS-CoV-2 infection MESH:C000657245
1026 980-988 Disease denotes infected MESH:D007239
1027 1314-1331 Disease denotes acute lung injury MESH:D055371
1028 1342-1377 Disease denotes acute respiratory distress syndrome MESH:D012128
1029 1379-1383 Disease denotes ARDS MESH:D012128
1030 1433-1442 Disease denotes mortality MESH:D003643
1031 1459-1467 Disease denotes COVID-19 MESH:C000657245
1032 1469-1489 Disease denotes SARS-CoV-2 infection MESH:C000657245
1033 1615-1626 Disease denotes lung damage MESH:D008171

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T58 1211-1225 Phenotype denotes cytokine storm http://purl.obolibrary.org/obo/HP_0033041
T59 1314-1331 Phenotype denotes acute lung injury http://www.orpha.net/ORDO/Orphanet_178320
T60 1333-1336 Phenotype denotes ALI http://www.orpha.net/ORDO/Orphanet_178320
T61 1348-1368 Phenotype denotes respiratory distress http://purl.obolibrary.org/obo/HP_0002098

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T107 54-66 http://purl.obolibrary.org/obo/GO_0009405 denotes pathogenesis
T108 375-384 http://purl.obolibrary.org/obo/GO_0097194 denotes apoptosis
T109 375-384 http://purl.obolibrary.org/obo/GO_0006915 denotes apoptosis
T110 465-469 http://purl.obolibrary.org/obo/GO_0001788 denotes ADCC
T111 600-615 http://purl.obolibrary.org/obo/GO_0006955 denotes immune response
T112 624-642 http://purl.obolibrary.org/obo/GO_0001816 denotes cytokine secretion
T113 633-642 http://purl.obolibrary.org/obo/GO_0046903 denotes secretion
T114 657-679 http://purl.obolibrary.org/obo/GO_0045087 denotes innate immune response
T115 664-679 http://purl.obolibrary.org/obo/GO_0006955 denotes immune response
T116 888-902 http://purl.obolibrary.org/obo/GO_0042783 denotes immune evasion
T117 1010-1023 http://purl.obolibrary.org/obo/GO_0045087 denotes innate immune

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T189 316-643 Sentence denotes These cells are hypothesized to be able to directly induce apoptosis through death receptor ligation, antibody-dependent cell-mediated cytotoxicity (ADCC), and through the release of cytotoxic granules, in addition to indirectly targeting virally infected cells via modulation of the immune response through cytokine secretion.
T190 644-936 Sentence denotes An effective innate immune response may be able to clear SARS-CoV-2 infection and leave the patient's lungs undamaged. (B) High risk individuals may have dysfunctional NK cells which may not recognize and respond to SARS-CoV-2 infection due to immune evasion strategies employed by the virus.
T191 937-1172 Sentence denotes It is hypothesized that an accumulation of infected epithelial cells and innate immune cells, monocyte-macrophages and neutrophils, release cytokines, and chemokines which further recruit immune cells, including NK cells, to the lungs.
T192 1173-1240 Sentence denotes This may result in the induction of a cytokine storm, led by IFN-γ.
T193 1241-1468 Sentence denotes This inflammatory state could act as the catalyst for the development of acute lung injury (ALI) and acute respiratory distress syndrome (ARDS), contributing to the significant morbidity, and mortality associated with COVID-19.
T194 1469-1627 Sentence denotes SARS-CoV-2 infection is associated with reduced NK cell levels and an exhausted phenotype which may impede viral clearance, in addition to severe lung damage.