PMC:7323532 / 2328-3124 JSONTXT

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T9","span":{"begin":583,"end":586},"obj":"Body_part"}],"attributes":[{"id":"A9","pred":"fma_id","subj":"T9","obj":"http://purl.org/sig/ont/fma/fma67095"}],"text":"On the morning of March 23, day 1, the patient fell out of bed, was unable to get up on his own, and called emergency services. The patient described a 1-week history of fever and cough followed by onset of dyspnea that day. Clinical examination showed signs of acute respiratory failure, tachypnea, and hypoxemia. The patient was intubated, transported to the hospital, and transferred to the ICU, where he required mechanical ventilation and vasopressor support. The same day, we took a protected distal aspiration before intravenous administration of cefotaxime. SARS-CoV-2 viral RNA was detected in this sample by using 2 distinct reverse transcription PCRs. The sample revealed 104/mL of Haemophilus influenzae, which was not found in a second protected distal aspiration performed on day 2."}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T50","span":{"begin":262,"end":287},"obj":"Disease"},{"id":"T52","span":{"begin":405,"end":407},"obj":"Disease"},{"id":"T53","span":{"begin":566,"end":574},"obj":"Disease"},{"id":"T54","span":{"begin":705,"end":715},"obj":"Disease"}],"attributes":[{"id":"A50","pred":"mondo_id","subj":"T50","obj":"http://purl.obolibrary.org/obo/MONDO_0001208"},{"id":"A51","pred":"mondo_id","subj":"T50","obj":"http://purl.obolibrary.org/obo/MONDO_0021113"},{"id":"A52","pred":"mondo_id","subj":"T52","obj":"http://purl.obolibrary.org/obo/MONDO_0017319"},{"id":"A53","pred":"mondo_id","subj":"T53","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A54","pred":"mondo_id","subj":"T54","obj":"http://purl.obolibrary.org/obo/MONDO_0005812"}],"text":"On the morning of March 23, day 1, the patient fell out of bed, was unable to get up on his own, and called emergency services. The patient described a 1-week history of fever and cough followed by onset of dyspnea that day. Clinical examination showed signs of acute respiratory failure, tachypnea, and hypoxemia. The patient was intubated, transported to the hospital, and transferred to the ICU, where he required mechanical ventilation and vasopressor support. The same day, we took a protected distal aspiration before intravenous administration of cefotaxime. SARS-CoV-2 viral RNA was detected in this sample by using 2 distinct reverse transcription PCRs. The sample revealed 104/mL of Haemophilus influenzae, which was not found in a second protected distal aspiration performed on day 2."}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T19","span":{"begin":150,"end":151},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T20","span":{"begin":487,"end":488},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T21","span":{"begin":740,"end":741},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"}],"text":"On the morning of March 23, day 1, the patient fell out of bed, was unable to get up on his own, and called emergency services. The patient described a 1-week history of fever and cough followed by onset of dyspnea that day. Clinical examination showed signs of acute respiratory failure, tachypnea, and hypoxemia. The patient was intubated, transported to the hospital, and transferred to the ICU, where he required mechanical ventilation and vasopressor support. The same day, we took a protected distal aspiration before intravenous administration of cefotaxime. SARS-CoV-2 viral RNA was detected in this sample by using 2 distinct reverse transcription PCRs. The sample revealed 104/mL of Haemophilus influenzae, which was not found in a second protected distal aspiration performed on day 2."}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T1","span":{"begin":554,"end":564},"obj":"Chemical"}],"attributes":[{"id":"A1","pred":"chebi_id","subj":"T1","obj":"http://purl.obolibrary.org/obo/CHEBI_204928"}],"text":"On the morning of March 23, day 1, the patient fell out of bed, was unable to get up on his own, and called emergency services. The patient described a 1-week history of fever and cough followed by onset of dyspnea that day. Clinical examination showed signs of acute respiratory failure, tachypnea, and hypoxemia. The patient was intubated, transported to the hospital, and transferred to the ICU, where he required mechanical ventilation and vasopressor support. The same day, we took a protected distal aspiration before intravenous administration of cefotaxime. SARS-CoV-2 viral RNA was detected in this sample by using 2 distinct reverse transcription PCRs. The sample revealed 104/mL of Haemophilus influenzae, which was not found in a second protected distal aspiration performed on day 2."}

{"project":"LitCovid-PubTator","denotations":[{"id":"110","span":{"begin":39,"end":46},"obj":"Species"},{"id":"111","span":{"begin":132,"end":139},"obj":"Species"},{"id":"112","span":{"begin":319,"end":326},"obj":"Species"},{"id":"113","span":{"begin":566,"end":576},"obj":"Species"},{"id":"114","span":{"begin":693,"end":715},"obj":"Species"},{"id":"115","span":{"begin":554,"end":564},"obj":"Chemical"},{"id":"116","span":{"begin":170,"end":175},"obj":"Disease"},{"id":"117","span":{"begin":180,"end":185},"obj":"Disease"},{"id":"118","span":{"begin":207,"end":214},"obj":"Disease"},{"id":"119","span":{"begin":268,"end":287},"obj":"Disease"},{"id":"120","span":{"begin":289,"end":298},"obj":"Disease"},{"id":"121","span":{"begin":304,"end":313},"obj":"Disease"}],"attributes":[{"id":"A110","pred":"tao:has_database_id","subj":"110","obj":"Tax:9606"},{"id":"A111","pred":"tao:has_database_id","subj":"111","obj":"Tax:9606"},{"id":"A112","pred":"tao:has_database_id","subj":"112","obj":"Tax:9606"},{"id":"A113","pred":"tao:has_database_id","subj":"113","obj":"Tax:2697049"},{"id":"A114","pred":"tao:has_database_id","subj":"114","obj":"Tax:727"},{"id":"A115","pred":"tao:has_database_id","subj":"115","obj":"MESH:D002439"},{"id":"A116","pred":"tao:has_database_id","subj":"116","obj":"MESH:D005334"},{"id":"A117","pred":"tao:has_database_id","subj":"117","obj":"MESH:D003371"},{"id":"A118","pred":"tao:has_database_id","subj":"118","obj":"MESH:D004417"},{"id":"A119","pred":"tao:has_database_id","subj":"119","obj":"MESH:D012131"},{"id":"A120","pred":"tao:has_database_id","subj":"120","obj":"MESH:D059246"},{"id":"A121","pred":"tao:has_database_id","subj":"121","obj":"MESH:D000860"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"On the morning of March 23, day 1, the patient fell out of bed, was unable to get up on his own, and called emergency services. The patient described a 1-week history of fever and cough followed by onset of dyspnea that day. Clinical examination showed signs of acute respiratory failure, tachypnea, and hypoxemia. The patient was intubated, transported to the hospital, and transferred to the ICU, where he required mechanical ventilation and vasopressor support. The same day, we took a protected distal aspiration before intravenous administration of cefotaxime. SARS-CoV-2 viral RNA was detected in this sample by using 2 distinct reverse transcription PCRs. The sample revealed 104/mL of Haemophilus influenzae, which was not found in a second protected distal aspiration performed on day 2."}

{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T3","span":{"begin":342,"end":353},"obj":"http://purl.obolibrary.org/obo/GO_0006810"},{"id":"T4","span":{"begin":635,"end":656},"obj":"http://purl.obolibrary.org/obo/GO_0001171"},{"id":"T5","span":{"begin":643,"end":656},"obj":"http://purl.obolibrary.org/obo/GO_0006351"}],"text":"On the morning of March 23, day 1, the patient fell out of bed, was unable to get up on his own, and called emergency services. The patient described a 1-week history of fever and cough followed by onset of dyspnea that day. Clinical examination showed signs of acute respiratory failure, tachypnea, and hypoxemia. The patient was intubated, transported to the hospital, and transferred to the ICU, where he required mechanical ventilation and vasopressor support. The same day, we took a protected distal aspiration before intravenous administration of cefotaxime. SARS-CoV-2 viral RNA was detected in this sample by using 2 distinct reverse transcription PCRs. The sample revealed 104/mL of Haemophilus influenzae, which was not found in a second protected distal aspiration performed on day 2."}

{"project":"LitCovid-PD-HP","denotations":[{"id":"T20","span":{"begin":170,"end":175},"obj":"Phenotype"},{"id":"T21","span":{"begin":180,"end":185},"obj":"Phenotype"},{"id":"T22","span":{"begin":207,"end":214},"obj":"Phenotype"},{"id":"T23","span":{"begin":268,"end":287},"obj":"Phenotype"},{"id":"T24","span":{"begin":289,"end":298},"obj":"Phenotype"},{"id":"T25","span":{"begin":304,"end":313},"obj":"Phenotype"},{"id":"T26","span":{"begin":506,"end":516},"obj":"Phenotype"},{"id":"T27","span":{"begin":766,"end":776},"obj":"Phenotype"}],"attributes":[{"id":"A20","pred":"hp_id","subj":"T20","obj":"http://purl.obolibrary.org/obo/HP_0001945"},{"id":"A21","pred":"hp_id","subj":"T21","obj":"http://purl.obolibrary.org/obo/HP_0012735"},{"id":"A22","pred":"hp_id","subj":"T22","obj":"http://purl.obolibrary.org/obo/HP_0002094"},{"id":"A23","pred":"hp_id","subj":"T23","obj":"http://purl.obolibrary.org/obo/HP_0002878"},{"id":"A24","pred":"hp_id","subj":"T24","obj":"http://purl.obolibrary.org/obo/HP_0002789"},{"id":"A25","pred":"hp_id","subj":"T25","obj":"http://purl.obolibrary.org/obo/HP_0012418"},{"id":"A26","pred":"hp_id","subj":"T26","obj":"http://purl.obolibrary.org/obo/HP_0002835"},{"id":"A27","pred":"hp_id","subj":"T27","obj":"http://purl.obolibrary.org/obo/HP_0002835"}],"text":"On the morning of March 23, day 1, the patient fell out of bed, was unable to get up on his own, and called emergency services. The patient described a 1-week history of fever and cough followed by onset of dyspnea that day. Clinical examination showed signs of acute respiratory failure, tachypnea, and hypoxemia. The patient was intubated, transported to the hospital, and transferred to the ICU, where he required mechanical ventilation and vasopressor support. The same day, we took a protected distal aspiration before intravenous administration of cefotaxime. SARS-CoV-2 viral RNA was detected in this sample by using 2 distinct reverse transcription PCRs. The sample revealed 104/mL of Haemophilus influenzae, which was not found in a second protected distal aspiration performed on day 2."}

{"project":"LitCovid-sentences","denotations":[{"id":"T16","span":{"begin":0,"end":127},"obj":"Sentence"},{"id":"T17","span":{"begin":128,"end":224},"obj":"Sentence"},{"id":"T18","span":{"begin":225,"end":314},"obj":"Sentence"},{"id":"T19","span":{"begin":315,"end":464},"obj":"Sentence"},{"id":"T20","span":{"begin":465,"end":565},"obj":"Sentence"},{"id":"T21","span":{"begin":566,"end":662},"obj":"Sentence"},{"id":"T22","span":{"begin":663,"end":796},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"On the morning of March 23, day 1, the patient fell out of bed, was unable to get up on his own, and called emergency services. The patient described a 1-week history of fever and cough followed by onset of dyspnea that day. Clinical examination showed signs of acute respiratory failure, tachypnea, and hypoxemia. The patient was intubated, transported to the hospital, and transferred to the ICU, where he required mechanical ventilation and vasopressor support. The same day, we took a protected distal aspiration before intravenous administration of cefotaxime. SARS-CoV-2 viral RNA was detected in this sample by using 2 distinct reverse transcription PCRs. The sample revealed 104/mL of Haemophilus influenzae, which was not found in a second protected distal aspiration performed on day 2."}