> top > docs > PMC:7321036 > spans > 94223-95056 > annotations

PMC:7321036 / 94223-95056 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T196 170-201 SO:0000704 denotes g oligo (dT) primers and SuperS
T197 665-669 SO:0000704 denotes gene

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T675 0-4 Body_part denotes Gene http://purl.org/sig/ont/fma/fma74402
T676 28-37 Body_part denotes cytokines http://purl.org/sig/ont/fma/fma84050
T677 140-143 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T678 520-523 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T369 49-57 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1291 0-4 http://purl.obolibrary.org/obo/OGG_0000000002 denotes Gene
T1292 399-400 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T1293 417-427 http://purl.obolibrary.org/obo/OBI_0000968 denotes Instrument
T1294 665-670 http://purl.obolibrary.org/obo/OGG_0000000002 denotes genes

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T559 207-209 Chemical denotes IV http://purl.obolibrary.org/obo/CHEBI_74327
T560 428-430 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067
T561 687-691 Chemical denotes DMSO http://purl.obolibrary.org/obo/CHEBI_28262

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T470 0-15 http://purl.obolibrary.org/obo/GO_0010467 denotes Gene expression
T471 99-120 http://purl.obolibrary.org/obo/GO_0001171 denotes Reverse transcription
T472 107-120 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T473 218-231 http://purl.obolibrary.org/obo/GO_0003968 denotes Transcriptase
T474 218-231 http://purl.obolibrary.org/obo/GO_0003899 denotes Transcriptase
T475 360-364 http://purl.obolibrary.org/obo/GO_0033867 denotes FAST
T476 713-730 http://purl.obolibrary.org/obo/GO_0019079 denotes viral replication
T477 713-730 http://purl.obolibrary.org/obo/GO_0019058 denotes viral replication

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
2114 578-582 Gene denotes ACTB Gene:60
2115 518-519 Gene denotes N Gene:43740575
2116 49-59 Species denotes SARS-CoV-2 Tax:2697049
2117 687-691 Chemical denotes DMSO MESH:D004121
2118 638-646 Disease denotes infected MESH:D007239
2119 678-686 Disease denotes infected MESH:D007239

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T826 0-98 Sentence denotes Gene expression of selected cytokines as well as SARS-CoV-2 replication was quantified by RT-qPCR.
T827 99-277 Sentence denotes Reverse transcription of extracted total RNA samples was performed using oligo (dT) primers and SuperScript IV Reverse Transcriptase according to the manufacturer’s instructions.
T828 278-439 Sentence denotes Quantitative real-time PCR analysis of cDNA samples was performed using KAPA SYBR FAST qPCR Master Mix (2X) Universal on a LightCycler 480 Instrument II (Roche).
T829 440-732 Sentence denotes For viral quantification, primers specifically targeting the subgenomic viral N RNA were used. ΔCT values were determined relative to the ACTB and ΔΔCT values were normalized to the average of mock infected samples (for host genes) or to infected DMSO treated samples (for viral replication).
T830 733-833 Sentence denotes Error bars indicate the standard deviation of the mean from three independent biological replicates.