PMC:7321036 / 93359-94195 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7321036","sourcedb":"PMC","sourceid":"7321036","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7321036","text":"SARS-CoV-2 infections in ACE2-A549 cells and lysis for cytokine analysis\nApproximately 5 × 105 A549-ACE2 cells were pre-treated with either DMSO or SB203580 (0.01, 0.1, 1, 10 μM final concentration). After 1 hour of pre-treatment, cells were infected with SARS-CoV-2 (isolate USA-WA1/2020) at an MOI of 0.1 while maintaining inhibitor concentrations in the media for 30 hours post infection. The supernatants from infected cells were analyzed by multiplexed ELISA for the presence of secreted cytokines and chemokines. For RNA analysis, cells were lysed in TRIzol and total RNA was extracted and DNase treated using the Direct-zol RNA Miniprep Plus kit (Zymo Research) according to the manufacturer’s instructions. For protein analysis, whole cell lysates were obtained by lysis in RIPA buffer and analyzed by SDS-PAGE and western blot.","divisions":[{"label":"title","span":{"begin":0,"end":72}}],"tracks":[{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T661","span":{"begin":35,"end":40},"obj":"Body_part"},{"id":"T662","span":{"begin":55,"end":63},"obj":"Body_part"},{"id":"T663","span":{"begin":105,"end":110},"obj":"Body_part"},{"id":"T664","span":{"begin":231,"end":236},"obj":"Body_part"},{"id":"T665","span":{"begin":423,"end":428},"obj":"Body_part"},{"id":"T666","span":{"begin":493,"end":502},"obj":"Body_part"},{"id":"T667","span":{"begin":507,"end":517},"obj":"Body_part"},{"id":"T668","span":{"begin":523,"end":526},"obj":"Body_part"},{"id":"T669","span":{"begin":537,"end":542},"obj":"Body_part"},{"id":"T670","span":{"begin":574,"end":577},"obj":"Body_part"},{"id":"T671","span":{"begin":631,"end":634},"obj":"Body_part"},{"id":"T672","span":{"begin":719,"end":726},"obj":"Body_part"},{"id":"T673","span":{"begin":743,"end":747},"obj":"Body_part"}],"attributes":[{"id":"A661","pred":"fma_id","subj":"T661","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A662","pred":"fma_id","subj":"T662","obj":"http://purl.org/sig/ont/fma/fma84050"},{"id":"A663","pred":"fma_id","subj":"T663","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A664","pred":"fma_id","subj":"T664","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A665","pred":"fma_id","subj":"T665","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A666","pred":"fma_id","subj":"T666","obj":"http://purl.org/sig/ont/fma/fma84050"},{"id":"A667","pred":"fma_id","subj":"T667","obj":"http://purl.org/sig/ont/fma/fma241981"},{"id":"A668","pred":"fma_id","subj":"T668","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A669","pred":"fma_id","subj":"T669","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A670","pred":"fma_id","subj":"T670","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A671","pred":"fma_id","subj":"T671","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A672","pred":"fma_id","subj":"T672","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A673","pred":"fma_id","subj":"T673","obj":"http://purl.org/sig/ont/fma/fma68646"},{"subj":"T661","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T662","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T663","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T664","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T665","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T666","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T667","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T668","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T669","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T670","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T671","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T672","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T673","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T365","span":{"begin":0,"end":8},"obj":"Disease"},{"id":"T366","span":{"begin":11,"end":24},"obj":"Disease"},{"id":"T367","span":{"begin":256,"end":264},"obj":"Disease"},{"id":"T368","span":{"begin":381,"end":390},"obj":"Disease"}],"attributes":[{"id":"A365","pred":"mondo_id","subj":"T365","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A366","pred":"mondo_id","subj":"T366","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A367","pred":"mondo_id","subj":"T367","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A368","pred":"mondo_id","subj":"T368","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"subj":"T365","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T366","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T367","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T368","pred":"source","obj":"LitCovid-PD-MONDO"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T1269","span":{"begin":30,"end":34},"obj":"http://purl.obolibrary.org/obo/CLO_0001601"},{"id":"T1270","span":{"begin":30,"end":34},"obj":"http://purl.obolibrary.org/obo/CLO_0050025"},{"id":"T1271","span":{"begin":30,"end":34},"obj":"http://purl.obolibrary.org/obo/CLO_0054264"},{"id":"T1272","span":{"begin":30,"end":34},"obj":"http://purl.obolibrary.org/obo/CLO_0054265"},{"id":"T1273","span":{"begin":30,"end":34},"obj":"http://purl.obolibrary.org/obo/CLO_0054266"},{"id":"T1274","span":{"begin":30,"end":34},"obj":"http://purl.obolibrary.org/obo/CLO_0054267"},{"id":"T1275","span":{"begin":30,"end":34},"obj":"http://purl.obolibrary.org/obo/CLO_0054268"},{"id":"T1276","span":{"begin":30,"end":34},"obj":"http://purl.obolibrary.org/obo/CLO_0054269"},{"id":"T1277","span":{"begin":35,"end":40},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T1278","span":{"begin":95,"end":99},"obj":"http://purl.obolibrary.org/obo/CLO_0001601"},{"id":"T1279","span":{"begin":95,"end":99},"obj":"http://purl.obolibrary.org/obo/CLO_0050025"},{"id":"T1280","span":{"begin":95,"end":99},"obj":"http://purl.obolibrary.org/obo/CLO_0054264"},{"id":"T1281","span":{"begin":95,"end":99},"obj":"http://purl.obolibrary.org/obo/CLO_0054265"},{"id":"T1282","span":{"begin":95,"end":99},"obj":"http://purl.obolibrary.org/obo/CLO_0054266"},{"id":"T1283","span":{"begin":95,"end":99},"obj":"http://purl.obolibrary.org/obo/CLO_0054267"},{"id":"T1284","span":{"begin":95,"end":99},"obj":"http://purl.obolibrary.org/obo/CLO_0054268"},{"id":"T1285","span":{"begin":95,"end":99},"obj":"http://purl.obolibrary.org/obo/CLO_0054269"},{"id":"T1286","span":{"begin":105,"end":110},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T1287","span":{"begin":231,"end":236},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T1288","span":{"begin":423,"end":428},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T1289","span":{"begin":537,"end":542},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T1290","span":{"begin":743,"end":747},"obj":"http://purl.obolibrary.org/obo/GO_0005623"}],"attributes":[{"subj":"T1269","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1270","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1271","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1272","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1273","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1274","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1275","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1276","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1277","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1278","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1279","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1280","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1281","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1282","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1283","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1284","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1285","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1286","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1287","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1288","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1289","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T1290","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T553","span":{"begin":140,"end":144},"obj":"Chemical"},{"id":"T554","span":{"begin":148,"end":156},"obj":"Chemical"},{"id":"T555","span":{"begin":325,"end":334},"obj":"Chemical"},{"id":"T556","span":{"begin":719,"end":726},"obj":"Chemical"},{"id":"T557","span":{"begin":787,"end":793},"obj":"Chemical"},{"id":"T558","span":{"begin":810,"end":813},"obj":"Chemical"}],"attributes":[{"id":"A553","pred":"chebi_id","subj":"T553","obj":"http://purl.obolibrary.org/obo/CHEBI_28262"},{"id":"A554","pred":"chebi_id","subj":"T554","obj":"http://purl.obolibrary.org/obo/CHEBI_90705"},{"id":"A555","pred":"chebi_id","subj":"T555","obj":"http://purl.obolibrary.org/obo/CHEBI_35222"},{"id":"A556","pred":"chebi_id","subj":"T556","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A557","pred":"chebi_id","subj":"T557","obj":"http://purl.obolibrary.org/obo/CHEBI_35225"},{"id":"A558","pred":"chebi_id","subj":"T558","obj":"http://purl.obolibrary.org/obo/CHEBI_8984"},{"subj":"T553","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T554","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T555","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T556","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T557","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T558","pred":"source","obj":"LitCovid-PD-CHEBI"}]},{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T468","span":{"begin":45,"end":50},"obj":"http://purl.obolibrary.org/obo/GO_0019835"},{"id":"T469","span":{"begin":773,"end":778},"obj":"http://purl.obolibrary.org/obo/GO_0019835"}],"attributes":[{"subj":"T468","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T469","pred":"source","obj":"LitCovid-PD-GO-BP"}]},{"project":"LitCovid-PubTator","denotations":[{"id":"2085","span":{"begin":25,"end":29},"obj":"Gene"},{"id":"2086","span":{"begin":0,"end":21},"obj":"Disease"},{"id":"2087","span":{"begin":30,"end":34},"obj":"CellLine"},{"id":"2098","span":{"begin":256,"end":266},"obj":"Species"},{"id":"2099","span":{"begin":140,"end":144},"obj":"Chemical"},{"id":"2100","span":{"begin":148,"end":156},"obj":"Chemical"},{"id":"2101","span":{"begin":557,"end":563},"obj":"Chemical"},{"id":"2102","span":{"begin":782,"end":793},"obj":"Chemical"},{"id":"2103","span":{"begin":810,"end":813},"obj":"Chemical"},{"id":"2104","span":{"begin":242,"end":250},"obj":"Disease"},{"id":"2105","span":{"begin":381,"end":390},"obj":"Disease"},{"id":"2106","span":{"begin":414,"end":422},"obj":"Disease"},{"id":"2107","span":{"begin":95,"end":104},"obj":"CellLine"}],"attributes":[{"id":"A2085","pred":"tao:has_database_id","subj":"2085","obj":"Gene:59272"},{"id":"A2086","pred":"tao:has_database_id","subj":"2086","obj":"MESH:C000657245"},{"id":"A2087","pred":"tao:has_database_id","subj":"2087","obj":"CVCL:0023"},{"id":"A2098","pred":"tao:has_database_id","subj":"2098","obj":"Tax:2697049"},{"id":"A2099","pred":"tao:has_database_id","subj":"2099","obj":"MESH:D004121"},{"id":"A2100","pred":"tao:has_database_id","subj":"2100","obj":"MESH:C093642"},{"id":"A2101","pred":"tao:has_database_id","subj":"2101","obj":"MESH:C411644"},{"id":"A2103","pred":"tao:has_database_id","subj":"2103","obj":"MESH:D012967"},{"id":"A2104","pred":"tao:has_database_id","subj":"2104","obj":"MESH:D007239"},{"id":"A2105","pred":"tao:has_database_id","subj":"2105","obj":"MESH:D007239"},{"id":"A2106","pred":"tao:has_database_id","subj":"2106","obj":"MESH:D007239"},{"id":"A2107","pred":"tao:has_database_id","subj":"2107","obj":"CVCL:0023"},{"subj":"2085","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2086","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2087","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2098","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2099","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2100","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2101","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2102","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2103","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2104","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2105","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2106","pred":"source","obj":"LitCovid-PubTator"},{"subj":"2107","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T819","span":{"begin":0,"end":72},"obj":"Sentence"},{"id":"T820","span":{"begin":73,"end":199},"obj":"Sentence"},{"id":"T821","span":{"begin":200,"end":391},"obj":"Sentence"},{"id":"T822","span":{"begin":392,"end":518},"obj":"Sentence"},{"id":"T823","span":{"begin":519,"end":714},"obj":"Sentence"},{"id":"T824","span":{"begin":715,"end":836},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T819","pred":"source","obj":"LitCovid-sentences"},{"subj":"T820","pred":"source","obj":"LitCovid-sentences"},{"subj":"T821","pred":"source","obj":"LitCovid-sentences"},{"subj":"T822","pred":"source","obj":"LitCovid-sentences"},{"subj":"T823","pred":"source","obj":"LitCovid-sentences"},{"subj":"T824","pred":"source","obj":"LitCovid-sentences"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PD-FMA-UBERON","color":"#93e1ec","default":true},{"id":"LitCovid-PD-MONDO","color":"#ecdd93"},{"id":"LitCovid-PD-CLO","color":"#c393ec"},{"id":"LitCovid-PD-CHEBI","color":"#93eca9"},{"id":"LitCovid-PD-GO-BP","color":"#ec9396"},{"id":"LitCovid-PubTator","color":"#93b0ec"},{"id":"LitCovid-sentences","color":"#caec93"}]}]}}