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PMC:7321036 / 88379-90182 JSONTXT

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LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T190 129-135 CHEBI:24870;CHEBI:24870 denotes ilicon

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T639 28-33 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T640 266-271 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T355 92-100 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1222 20-33 http://purl.obolibrary.org/obo/CLO_0051719 denotes Vero E6 cells
T1223 266-271 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T1224 760-761 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T1225 862-863 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T1226 1021-1023 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T1227 1024-1025 http://purl.obolibrary.org/obo/CLO_0001020 denotes Å
T1228 1040-1041 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T1229 1147-1148 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T1230 1165-1170 http://purl.obolibrary.org/obo/UBERON_0007688 denotes field
T1231 1412-1415 http://purl.obolibrary.org/obo/CLO_0001387 denotes 4°C
T1232 1565-1566 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T1233 1573-1576 http://purl.obolibrary.org/obo/CLO_0009477 denotes UC7
T1234 1642-1643 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T1235 1648-1650 http://purl.obolibrary.org/obo/CLO_0002040 denotes BT
T1236 1726-1733 http://www.ebi.ac.uk/efo/EFO_0000881 denotes Digital
T1237 1760-1761 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T478 128-135 Chemical denotes silicon http://purl.obolibrary.org/obo/CHEBI_27573
T479 155-163 Chemical denotes electron http://purl.obolibrary.org/obo/CHEBI_10545
T480 205-213 Chemical denotes electron http://purl.obolibrary.org/obo/CHEBI_10545
T481 239-247 Chemical denotes electron http://purl.obolibrary.org/obo/CHEBI_10545
T482 340-354 Chemical denotes glutaraldehyde http://purl.obolibrary.org/obo/CHEBI_64276
T483 375-384 Chemical denotes phosphate http://purl.obolibrary.org/obo/CHEBI_18367|http://purl.obolibrary.org/obo/CHEBI_26020|http://purl.obolibrary.org/obo/CHEBI_35780|http://purl.obolibrary.org/obo/CHEBI_43474
T487 385-391 Chemical denotes buffer http://purl.obolibrary.org/obo/CHEBI_35225
T488 423-439 Chemical denotes osmium tetroxide http://purl.obolibrary.org/obo/CHEBI_88215
T489 423-429 Chemical denotes osmium http://purl.obolibrary.org/obo/CHEBI_30687
T490 445-467 Chemical denotes potassium ferrocyanide http://purl.obolibrary.org/obo/CHEBI_30059
T491 445-454 Chemical denotes potassium http://purl.obolibrary.org/obo/CHEBI_26216
T492 455-467 Chemical denotes ferrocyanide http://purl.obolibrary.org/obo/CHEBI_5032
T493 477-494 Chemical denotes sodium cacodylate http://purl.obolibrary.org/obo/CHEBI_62956
T494 477-483 Chemical denotes sodium http://purl.obolibrary.org/obo/CHEBI_26708
T495 495-501 Chemical denotes buffer http://purl.obolibrary.org/obo/CHEBI_35225
T496 520-537 Chemical denotes sodium cacodylate http://purl.obolibrary.org/obo/CHEBI_62956
T497 520-526 Chemical denotes sodium http://purl.obolibrary.org/obo/CHEBI_26708
T498 538-544 Chemical denotes buffer http://purl.obolibrary.org/obo/CHEBI_35225
T499 566-577 Chemical denotes tannic acid http://purl.obolibrary.org/obo/CHEBI_75211
T500 573-577 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T501 604-610 Chemical denotes buffer http://purl.obolibrary.org/obo/CHEBI_35225
T502 662-678 Chemical denotes osmium tetroxide http://purl.obolibrary.org/obo/CHEBI_88215
T503 662-668 Chemical denotes osmium http://purl.obolibrary.org/obo/CHEBI_30687
T504 687-704 Chemical denotes sodium cacodylate http://purl.obolibrary.org/obo/CHEBI_62956
T505 687-693 Chemical denotes sodium http://purl.obolibrary.org/obo/CHEBI_26708
T506 769-776 Chemical denotes ethanol http://purl.obolibrary.org/obo/CHEBI_16236
T507 855-858 Chemical denotes CO2 http://purl.obolibrary.org/obo/CHEBI_16526
T508 944-950 Chemical denotes carbon http://purl.obolibrary.org/obo/CHEBI_27594|http://purl.obolibrary.org/obo/CHEBI_33415
T510 959-967 Chemical denotes aluminum http://purl.obolibrary.org/obo/CHEBI_28984
T511 1029-1036 Chemical denotes iridium http://purl.obolibrary.org/obo/CHEBI_49666
T512 1115-1117 Chemical denotes PA http://purl.obolibrary.org/obo/CHEBI_30745|http://purl.obolibrary.org/obo/CHEBI_30768|http://purl.obolibrary.org/obo/CHEBI_74753|http://purl.obolibrary.org/obo/CHEBI_7959|http://purl.obolibrary.org/obo/CHEBI_8429
T517 1189-1197 Chemical denotes electron http://purl.obolibrary.org/obo/CHEBI_10545
T518 1251-1259 Chemical denotes electron http://purl.obolibrary.org/obo/CHEBI_10545
T519 1272-1275 Chemical denotes TEM http://purl.obolibrary.org/obo/CHEBI_27919
T520 1331-1339 Chemical denotes electron http://purl.obolibrary.org/obo/CHEBI_10545
T521 1401-1408 Chemical denotes acetate http://purl.obolibrary.org/obo/CHEBI_30089|http://purl.obolibrary.org/obo/CHEBI_47622
T523 1433-1439 Chemical denotes osmium http://purl.obolibrary.org/obo/CHEBI_30687
T524 1490-1497 Chemical denotes ethanol http://purl.obolibrary.org/obo/CHEBI_16236
T525 1608-1610 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072
T527 1648-1650 Chemical denotes BT http://purl.obolibrary.org/obo/CHEBI_45993
T528 1671-1679 Chemical denotes electron http://purl.obolibrary.org/obo/CHEBI_10545

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1975 518-519 Gene denotes M Gene:43740571
1976 475-476 Gene denotes M Gene:43740571
1977 362-363 Gene denotes M Gene:43740571
1978 92-102 Species denotes SARS-CoV-2 Tax:2697049
1979 111-115 Species denotes nCoV Tax:2697049
1980 128-135 Chemical denotes silicon MESH:D012825
1981 318-334 Chemical denotes paraformaldehyde MESH:C003043
1982 340-354 Chemical denotes glutaraldehyde MESH:D005976
1983 364-384 Chemical denotes Sorenson’s phosphate
1984 423-439 Chemical denotes osmium tetroxide MESH:D009993
1985 445-467 Chemical denotes potassium ferrocyanide MESH:C031835
1986 477-494 Chemical denotes sodium cacodylate
1987 520-537 Chemical denotes sodium cacodylate
1988 566-577 Chemical denotes tannic acid MESH:D013634
1989 581-585 Chemical denotes dH2O
1990 662-678 Chemical denotes osmium tetroxide MESH:D009993
1991 687-704 Chemical denotes sodium cacodylate
1992 723-727 Chemical denotes dH2O
1993 1394-1408 Chemical denotes uranyl acetate MESH:C005460
1994 1433-1439 Chemical denotes osmium MESH:D009992
1995 1490-1497 Chemical denotes ethanol MESH:D000431
1996 65-73 Disease denotes infected MESH:D007239
1997 25-27 CellLine denotes E6 CVCL:4582

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T787 0-19 Sentence denotes Electron microscopy
T788 20-225 Sentence denotes Vero E6 cells were seeded overnight and then infected for 24 hours with SARS-CoV-2 isolate nCoV-WA1-2020 on silicon chips for scanning electron microscopy or Thermanox for transmission electron microscopy.
T789 226-586 Sentence denotes For scanning electron microscopy (SEM), cells were fixed with Karnovsky’s formulation of 2% paraformaldehyde/2.5% glutaraldehyde in 0.1 M Sorenson’s phosphate buffer, and then post-fixed with 1.0% osmium tetroxide/0.8% potassium ferrocyanide in 0.1 M sodium cacodylate buffer washed with 0.1 M sodium cacodylate buffer then stained with 1% tannic acid in dH2O.
T790 587-728 Sentence denotes After additional buffer washes, the samples were further osmicated with 2% osmium tetroxide in 0.1M sodium cacodylate, then washed with dH2O.
T791 729-1233 Sentence denotes Specimens were dehydrated with a graded ethanol series from 50%, 75%, 100% x 3 for 5 minutes each, critical point dried under CO2 in a Bal-Tec model CPD 030 Drier (Balzers, Liechtenstein), mounted with double sided carbon tape on aluminum specimen mounts (Ted Pella), and sputter coated with 35 Å of iridium in a Quorum EMS300T D sputter coater (Electron Microscopy Sciences, Hatfield, PA) prior to viewing at 5 kV in a Hitachi SU-8000 field emission scanning electron microscope (Hitachi, Tokyo, Japan).
T792 1234-1536 Sentence denotes For transmission electron microscopy (TEM), specimens were fixed as described above for scanning electron microscopy and additionally stained overnight with 1% uranyl acetate at 4°C after the second osmium staining and then dehydrated with the same graded ethanol series, and embedded in Spurr’s resin.
T793 1537-1725 Sentence denotes Thin sections were cut with a Leica UC7 ultramicrotome (Buffalo Grove, IL) prior to viewing at 120 kV on a FEI BT Tecnai transmission electron microscope (Thermofisher/FEI, Hillsboro, OR).
T794 1726-1803 Sentence denotes Digital images were acquired with a Gatan Rio camera (Gatan, Pleasanton, CA).