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PMC:7321036 / 5913-6833 JSONTXT

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LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T136 25-29 CL_6 denotes Vero
T137 73-79 UBERON:0002113 denotes kidney
T138 106-112 NCBITaxon:9527 denotes monkey
T139 114-125 NCBITaxon:60711 denotes Chlorocebus
T140 126-133 NCBITaxon:9606 denotes sabaeus
T141 223-233 SP_7 denotes SARS-CoV-2
T142 338-348 SP_7 denotes SARS-CoV-2
T143 635-646 NCBITaxon:60711 denotes Chlorocebus
T144 647-654 NCBITaxon:9606 denotes sabaeus
T145 659-664 SP_6;NCBITaxon:9606 denotes human
T146 701-722 SO:0001811 denotes phosphorylation sites
T147 779-784 SP_6;NCBITaxon:9606 denotes human
T148 793-802 SO:0000855 denotes orthologs

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T4537 33-38 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T39074 42-46 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T2018 73-79 Body_part denotes kidney http://purl.org/sig/ont/fma/fma7203
T98643 162-166 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T3823 269-274 Body_part denotes Cells http://purl.org/sig/ont/fma/fma68646
T73925 568-575 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T29258 665-672 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T65831 727-734 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T82560 785-792 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T3 73-79 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T54 223-231 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T55 234-243 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T56 338-346 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T57 349-358 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T58 399-408 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T59 474-477 Disease denotes DIA http://purl.obolibrary.org/obo/MONDO_0022963

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T43336 25-38 http://purl.obolibrary.org/obo/CLO_0051719 denotes Vero E6 cells
T32490 40-41 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T10221 42-51 http://purl.obolibrary.org/obo/CLO_0000031 denotes cell line
T72437 73-79 http://purl.obolibrary.org/obo/UBERON_0002113 denotes kidney
T71193 73-79 http://www.ebi.ac.uk/efo/EFO_0000927 denotes kidney
T43310 73-79 http://www.ebi.ac.uk/efo/EFO_0000929 denotes kidney
T69402 83-84 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T96885 85-91 http://purl.obolibrary.org/obo/UBERON_0003100 denotes female
T10558 106-112 http://purl.obolibrary.org/obo/NCBITaxon_9479 denotes monkey
T65668 162-171 http://purl.obolibrary.org/obo/CLO_0000031 denotes cell line
T47731 269-274 http://purl.obolibrary.org/obo/GO_0005623 denotes Cells
T96407 366-370 http://purl.obolibrary.org/obo/CLO_0001382 denotes 4, 8
T17213 432-433 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T84745 442-443 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T21057 630-632 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T22948 659-672 http://purl.obolibrary.org/obo/PR_000029067 denotes human protein
T91689 779-792 http://purl.obolibrary.org/obo/PR_000029067 denotes human protein

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T25 568-575 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T26 665-672 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T27 727-734 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T28 785-792 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T44285 589-604 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T35873 701-716 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T22402 804-819 http://purl.obolibrary.org/obo/GO_0016310 denotes Phosphorylation

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
191 92-112 Species denotes African green monkey Tax:9534
192 114-133 Species denotes Chlorocebus sabaeus Tax:60711
193 635-654 Species denotes Chlorocebus sabaeus Tax:60711
194 659-664 Species denotes human Tax:9606
195 779-784 Species denotes human Tax:9606
196 223-243 Disease denotes SARS-CoV-2 infection MESH:C000657245
197 338-358 Disease denotes SARS-CoV-2 infection MESH:C000657245
198 399-408 Disease denotes infection MESH:D007239
199 30-32 CellLine denotes E6 CVCL:4582

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T38 157-268 Sentence denotes This cell line was selected because of its high susceptibility to SARS-CoV-2 infection (Harcourt et al., 2020).
T39 269-435 Sentence denotes Cells were harvested in biological triplicate at 6 time points after SARS-CoV-2 infection (0, 2, 4, 8, 12, or 24 h) or after mock infection at 0 or 24 h (Figure 1 A).
T40 436-634 Sentence denotes Using a data-independent acquisition (DIA) proteomics approach, each sample was then partitioned and analyzed for changes in global protein abundance or phosphorylation (data available in Table S1).
T41 635-803 Sentence denotes Chlorocebus sabaeus and human protein sequences were aligned, and phosphorylation sites and protein identifiers were mapped to their respective human protein orthologs.

2_test

Id Subject Object Predicate Lexical cue
32645325-25267831-20773042 150-154 25267831 denotes 2014
32645325-32160149-20773043 262-266 32160149 denotes 2020