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PMC:7321036 / 39788-40228 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T317 57-61 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T318 141-145 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T319 156-160 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T320 193-197 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T321 205-209 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T322 270-275 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T14 141-145 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T15 193-197 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T186 79-83 Disease denotes STAR http://purl.obolibrary.org/obo/MONDO_0010408
T187 120-129 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T188 141-155 Disease denotes lung carcinoma http://purl.obolibrary.org/obo/MONDO_0005138
T189 146-155 Disease denotes carcinoma http://purl.obolibrary.org/obo/MONDO_0004993
T190 193-204 Disease denotes lung cancer http://purl.obolibrary.org/obo/MONDO_0008903
T191 198-204 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992
T192 392-401 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T422 43-51 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T423 57-61 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T424 133-134 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T425 135-140 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T426 141-145 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T427 141-145 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T428 156-165 http://purl.obolibrary.org/obo/CLO_0000031 denotes cell line
T429 167-171 http://purl.obolibrary.org/obo/CLO_0001601 denotes A549
T430 167-171 http://purl.obolibrary.org/obo/CLO_0050025 denotes A549
T431 167-171 http://purl.obolibrary.org/obo/CLO_0054264 denotes A549
T432 167-171 http://purl.obolibrary.org/obo/CLO_0054265 denotes A549
T433 167-171 http://purl.obolibrary.org/obo/CLO_0054266 denotes A549
T434 167-171 http://purl.obolibrary.org/obo/CLO_0054267 denotes A549
T435 167-171 http://purl.obolibrary.org/obo/CLO_0054268 denotes A549
T436 167-171 http://purl.obolibrary.org/obo/CLO_0054269 denotes A549
T437 174-175 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T438 176-181 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T439 182-192 http://purl.obolibrary.org/obo/CL_0000066 denotes epithelial
T440 193-197 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T441 193-197 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T442 198-214 http://purl.obolibrary.org/obo/OBI_0001906 denotes cancer cell line
T443 198-214 http://www.ebi.ac.uk/cellline#cancer_cell_line denotes cancer cell line
T444 216-221 http://purl.obolibrary.org/obo/CLO_0002192 denotes Calu3
T445 236-241 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T446 252-262 http://purl.obolibrary.org/obo/CL_0000066 denotes epithelial
T447 270-275 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T448 377-386 http://purl.obolibrary.org/obo/CLO_0001658 denotes activated

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T276 22-51 http://purl.obolibrary.org/obo/GO_0003700 denotes transcription factor activity
T277 22-42 http://purl.obolibrary.org/obo/GO_0000981 denotes transcription factor
T278 22-35 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T279 57-72 http://purl.obolibrary.org/obo/GO_0010467 denotes gene expression
T280 294-315 http://purl.obolibrary.org/obo/GO_0000981 denotes transcription factors
T281 294-307 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T282 337-341 http://purl.obolibrary.org/obo/GO_0004707 denotes MAPK

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T7 146-155 Phenotype denotes carcinoma http://purl.obolibrary.org/obo/HP_0030731
T8 193-204 Phenotype denotes lung cancer http://purl.obolibrary.org/obo/HP_0100526

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
780 333-336 Gene denotes p38 Gene:5594
781 135-140 Species denotes human Tax:9606
782 176-181 Species denotes human Tax:9606
783 236-241 Species denotes human Tax:9606
785 120-129 Disease denotes infection MESH:D007239
786 141-155 Disease denotes lung carcinoma MESH:D008175
787 193-204 Disease denotes lung cancer MESH:D008175
788 392-401 Disease denotes infection MESH:D007239
789 167-171 CellLine denotes A549 CVCL:0023

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T262 0-440 Sentence denotes Analysis of estimated transcription factor activity from gene expression data (STAR Methods; Table S6) derived from the infection of a human lung carcinoma cell line (A549), a human epithelial lung cancer cell line (Calu3), and primary human bronchial epithelial (NHBE) cells demonstrated that transcription factors regulated by the p38/MAPK pathway were among the most highly activated upon infection (Figure 6E; Blanco-Melo et al., 2020).

2_test

Id Subject Object Predicate Lexical cue
32645325-32416070-20773073 434-438 32416070 denotes 2020