PMC:7321036 / 20958-22117 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7321036","sourcedb":"PMC","sourceid":"7321036","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7321036","text":"The SARS-CoV-2 N protein is known to interact with several RNA-processing proteins that are differentially phosphorylated during infection, including LARP1 and RRP9. Here LARP1 phosphorylation decreases on several sites, which is known to consequently increase LARP1 affinity for 3′ untranslated regions (UTRs) of mRNAs encoding ribosomal proteins, driving inhibition of protein synthesis (Hong et al., 2017). This mechanism may be utilized by SARS-CoV-2 to prioritize synthesis of viral proteins over host proteins. In addition, ORF6 interacts with the NUP98/RAE complex, and NUP98 phosphorylation was observed to increase at S888, a site within its peptidase domain. NUP98 autocatalytic cleavage is required for localization to the nuclear pore; thus, it is possible that NUP98 interaction with ORF6 and/or its virus-induced phosphorylation prevents host mRNA export through the nuclear pore (Krull et al., 2010; Hodel et al., 2002). A similar mechanism is employed by vesicular stomatitis virus (VSV) matrix protein to block host mRNA export by targeting the NUP98/RAE complex, leading to exclusive translation of cytoplasmic VSV mRNAs (Quan et al., 2014).","tracks":[{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T163","span":{"begin":17,"end":24},"obj":"Body_part"},{"id":"T164","span":{"begin":59,"end":62},"obj":"Body_part"},{"id":"T165","span":{"begin":74,"end":82},"obj":"Body_part"},{"id":"T166","span":{"begin":329,"end":338},"obj":"Body_part"},{"id":"T167","span":{"begin":339,"end":347},"obj":"Body_part"},{"id":"T168","span":{"begin":371,"end":378},"obj":"Body_part"},{"id":"T169","span":{"begin":488,"end":496},"obj":"Body_part"},{"id":"T170","span":{"begin":507,"end":515},"obj":"Body_part"},{"id":"T171","span":{"begin":734,"end":746},"obj":"Body_part"},{"id":"T172","span":{"begin":857,"end":861},"obj":"Body_part"},{"id":"T173","span":{"begin":881,"end":893},"obj":"Body_part"},{"id":"T174","span":{"begin":1011,"end":1018},"obj":"Body_part"},{"id":"T175","span":{"begin":1033,"end":1037},"obj":"Body_part"},{"id":"T176","span":{"begin":1117,"end":1128},"obj":"Body_part"}],"attributes":[{"id":"A163","pred":"fma_id","subj":"T163","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A164","pred":"fma_id","subj":"T164","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A165","pred":"fma_id","subj":"T165","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A166","pred":"fma_id","subj":"T166","obj":"http://purl.org/sig/ont/fma/fma66867"},{"id":"A167","pred":"fma_id","subj":"T167","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A168","pred":"fma_id","subj":"T168","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A169","pred":"fma_id","subj":"T169","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A170","pred":"fma_id","subj":"T170","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A171","pred":"fma_id","subj":"T171","obj":"http://purl.org/sig/ont/fma/fma63148"},{"id":"A172","pred":"fma_id","subj":"T172","obj":"http://purl.org/sig/ont/fma/fma67122"},{"id":"A173","pred":"fma_id","subj":"T173","obj":"http://purl.org/sig/ont/fma/fma63148"},{"id":"A174","pred":"fma_id","subj":"T174","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A175","pred":"fma_id","subj":"T175","obj":"http://purl.org/sig/ont/fma/fma67122"},{"id":"A176","pred":"fma_id","subj":"T176","obj":"http://purl.org/sig/ont/fma/fma66835"},{"subj":"T163","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T164","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T165","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T166","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T167","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T168","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T169","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T170","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T171","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T172","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T173","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T174","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T175","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T176","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T8","span":{"begin":742,"end":746},"obj":"Body_part"},{"id":"T9","span":{"begin":889,"end":893},"obj":"Body_part"}],"attributes":[{"id":"A8","pred":"uberon_id","subj":"T8","obj":"http://purl.obolibrary.org/obo/UBERON_0008915"},{"id":"A9","pred":"uberon_id","subj":"T9","obj":"http://purl.obolibrary.org/obo/UBERON_0008915"},{"subj":"T8","pred":"source","obj":"LitCovid-PD-UBERON"},{"subj":"T9","pred":"source","obj":"LitCovid-PD-UBERON"}]},{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T107","span":{"begin":4,"end":12},"obj":"Disease"},{"id":"T108","span":{"begin":129,"end":138},"obj":"Disease"},{"id":"T109","span":{"begin":444,"end":452},"obj":"Disease"},{"id":"T110","span":{"begin":560,"end":563},"obj":"Disease"},{"id":"T111","span":{"begin":971,"end":991},"obj":"Disease"},{"id":"T112","span":{"begin":981,"end":991},"obj":"Disease"},{"id":"T113","span":{"begin":1068,"end":1071},"obj":"Disease"}],"attributes":[{"id":"A107","pred":"mondo_id","subj":"T107","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A108","pred":"mondo_id","subj":"T108","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A109","pred":"mondo_id","subj":"T109","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A110","pred":"mondo_id","subj":"T110","obj":"http://purl.obolibrary.org/obo/MONDO_0015057"},{"id":"A111","pred":"mondo_id","subj":"T111","obj":"http://purl.obolibrary.org/obo/MONDO_0025028"},{"id":"A112","pred":"mondo_id","subj":"T112","obj":"http://purl.obolibrary.org/obo/MONDO_0004842"},{"id":"A113","pred":"mondo_id","subj":"T113","obj":"http://purl.obolibrary.org/obo/MONDO_0015057"},{"subj":"T107","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T108","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T109","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T110","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T111","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T112","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T113","pred":"source","obj":"LitCovid-PD-MONDO"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T46747","span":{"begin":633,"end":634},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T17054","span":{"begin":813,"end":818},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"},{"id":"T20491","span":{"begin":936,"end":937},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T99949","span":{"begin":992,"end":997},"obj":"http://purl.obolibrary.org/obo/NCBITaxon_10239"}],"attributes":[{"subj":"T46747","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T17054","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T20491","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T99949","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T141","span":{"begin":17,"end":24},"obj":"Chemical"},{"id":"T142","span":{"begin":74,"end":82},"obj":"Chemical"},{"id":"T143","span":{"begin":339,"end":347},"obj":"Chemical"},{"id":"T144","span":{"begin":371,"end":378},"obj":"Chemical"},{"id":"T145","span":{"begin":488,"end":496},"obj":"Chemical"},{"id":"T146","span":{"begin":507,"end":515},"obj":"Chemical"},{"id":"T147","span":{"begin":1011,"end":1018},"obj":"Chemical"}],"attributes":[{"id":"A141","pred":"chebi_id","subj":"T141","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A142","pred":"chebi_id","subj":"T142","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A143","pred":"chebi_id","subj":"T143","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A144","pred":"chebi_id","subj":"T144","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A145","pred":"chebi_id","subj":"T145","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A146","pred":"chebi_id","subj":"T146","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A147","pred":"chebi_id","subj":"T147","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"subj":"T141","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T142","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T143","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T144","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T145","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T146","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T147","pred":"source","obj":"LitCovid-PD-CHEBI"}]},{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T111","span":{"begin":59,"end":73},"obj":"http://purl.obolibrary.org/obo/GO_0006396"},{"id":"T112","span":{"begin":177,"end":192},"obj":"http://purl.obolibrary.org/obo/GO_0016310"},{"id":"T113","span":{"begin":371,"end":388},"obj":"http://purl.obolibrary.org/obo/GO_0006412"},{"id":"T114","span":{"begin":379,"end":388},"obj":"http://purl.obolibrary.org/obo/GO_0009058"},{"id":"T115","span":{"begin":469,"end":478},"obj":"http://purl.obolibrary.org/obo/GO_0009058"},{"id":"T116","span":{"begin":583,"end":598},"obj":"http://purl.obolibrary.org/obo/GO_0016310"},{"id":"T117","span":{"begin":714,"end":726},"obj":"http://purl.obolibrary.org/obo/GO_0051179"},{"id":"T118","span":{"begin":827,"end":842},"obj":"http://purl.obolibrary.org/obo/GO_0016310"},{"id":"T119","span":{"begin":1102,"end":1113},"obj":"http://purl.obolibrary.org/obo/GO_0006412"}],"attributes":[{"subj":"T111","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T112","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T113","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T114","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T115","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T116","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T117","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T118","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T119","pred":"source","obj":"LitCovid-PD-GO-BP"}]},{"project":"LitCovid-PD-HP","denotations":[{"id":"T4","span":{"begin":981,"end":991},"obj":"Phenotype"}],"attributes":[{"id":"A4","pred":"hp_id","subj":"T4","obj":"http://purl.obolibrary.org/obo/HP_0010280"},{"subj":"T4","pred":"source","obj":"LitCovid-PD-HP"}]},{"project":"LitCovid-PubTator","denotations":[{"id":"352","span":{"begin":150,"end":155},"obj":"Gene"},{"id":"353","span":{"begin":160,"end":164},"obj":"Gene"},{"id":"354","span":{"begin":171,"end":176},"obj":"Gene"},{"id":"355","span":{"begin":261,"end":266},"obj":"Gene"},{"id":"356","span":{"begin":530,"end":534},"obj":"Gene"},{"id":"357","span":{"begin":554,"end":559},"obj":"Gene"},{"id":"358","span":{"begin":577,"end":582},"obj":"Gene"},{"id":"359","span":{"begin":669,"end":674},"obj":"Gene"},{"id":"360","span":{"begin":774,"end":779},"obj":"Gene"},{"id":"361","span":{"begin":797,"end":801},"obj":"Gene"},{"id":"362","span":{"begin":1062,"end":1067},"obj":"Gene"},{"id":"363","span":{"begin":15,"end":16},"obj":"Gene"},{"id":"364","span":{"begin":4,"end":14},"obj":"Species"},{"id":"365","span":{"begin":444,"end":454},"obj":"Species"},{"id":"366","span":{"begin":971,"end":997},"obj":"Species"},{"id":"367","span":{"begin":999,"end":1002},"obj":"Species"},{"id":"368","span":{"begin":1129,"end":1132},"obj":"Species"},{"id":"369","span":{"begin":129,"end":138},"obj":"Disease"}],"attributes":[{"id":"A352","pred":"tao:has_database_id","subj":"352","obj":"Gene:23367"},{"id":"A353","pred":"tao:has_database_id","subj":"353","obj":"Gene:9136"},{"id":"A354","pred":"tao:has_database_id","subj":"354","obj":"Gene:23367"},{"id":"A355","pred":"tao:has_database_id","subj":"355","obj":"Gene:23367"},{"id":"A356","pred":"tao:has_database_id","subj":"356","obj":"Gene:43740572"},{"id":"A357","pred":"tao:has_database_id","subj":"357","obj":"Gene:4928"},{"id":"A358","pred":"tao:has_database_id","subj":"358","obj":"Gene:4928"},{"id":"A359","pred":"tao:has_database_id","subj":"359","obj":"Gene:4928"},{"id":"A360","pred":"tao:has_database_id","subj":"360","obj":"Gene:4928"},{"id":"A361","pred":"tao:has_database_id","subj":"361","obj":"Gene:43740572"},{"id":"A362","pred":"tao:has_database_id","subj":"362","obj":"Gene:4928"},{"id":"A363","pred":"tao:has_database_id","subj":"363","obj":"Gene:43740575"},{"id":"A364","pred":"tao:has_database_id","subj":"364","obj":"Tax:2697049"},{"id":"A365","pred":"tao:has_database_id","subj":"365","obj":"Tax:2697049"},{"id":"A366","pred":"tao:has_database_id","subj":"366","obj":"Tax:11276"},{"id":"A367","pred":"tao:has_database_id","subj":"367","obj":"Tax:11276"},{"id":"A368","pred":"tao:has_database_id","subj":"368","obj":"Tax:11276"},{"id":"A369","pred":"tao:has_database_id","subj":"369","obj":"MESH:D007239"},{"subj":"352","pred":"source","obj":"LitCovid-PubTator"},{"subj":"353","pred":"source","obj":"LitCovid-PubTator"},{"subj":"354","pred":"source","obj":"LitCovid-PubTator"},{"subj":"355","pred":"source","obj":"LitCovid-PubTator"},{"subj":"356","pred":"source","obj":"LitCovid-PubTator"},{"subj":"357","pred":"source","obj":"LitCovid-PubTator"},{"subj":"358","pred":"source","obj":"LitCovid-PubTator"},{"subj":"359","pred":"source","obj":"LitCovid-PubTator"},{"subj":"360","pred":"source","obj":"LitCovid-PubTator"},{"subj":"361","pred":"source","obj":"LitCovid-PubTator"},{"subj":"362","pred":"source","obj":"LitCovid-PubTator"},{"subj":"363","pred":"source","obj":"LitCovid-PubTator"},{"subj":"364","pred":"source","obj":"LitCovid-PubTator"},{"subj":"365","pred":"source","obj":"LitCovid-PubTator"},{"subj":"366","pred":"source","obj":"LitCovid-PubTator"},{"subj":"367","pred":"source","obj":"LitCovid-PubTator"},{"subj":"368","pred":"source","obj":"LitCovid-PubTator"},{"subj":"369","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T141","span":{"begin":0,"end":165},"obj":"Sentence"},{"id":"T142","span":{"begin":166,"end":409},"obj":"Sentence"},{"id":"T143","span":{"begin":410,"end":516},"obj":"Sentence"},{"id":"T144","span":{"begin":517,"end":668},"obj":"Sentence"},{"id":"T145","span":{"begin":669,"end":935},"obj":"Sentence"},{"id":"T146","span":{"begin":936,"end":1159},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T141","pred":"source","obj":"LitCovid-sentences"},{"subj":"T142","pred":"source","obj":"LitCovid-sentences"},{"subj":"T143","pred":"source","obj":"LitCovid-sentences"},{"subj":"T144","pred":"source","obj":"LitCovid-sentences"},{"subj":"T145","pred":"source","obj":"LitCovid-sentences"},{"subj":"T146","pred":"source","obj":"LitCovid-sentences"}]},{"project":"2_test","denotations":[{"id":"32645325-28650797-20773058","span":{"begin":403,"end":407},"obj":"28650797"},{"id":"32645325-20407419-20773059","span":{"begin":909,"end":913},"obj":"20407419"},{"id":"32645325-12191480-20773060","span":{"begin":929,"end":933},"obj":"12191480"},{"id":"32645325-24927547-20773061","span":{"begin":1153,"end":1157},"obj":"24927547"}],"attributes":[{"subj":"32645325-28650797-20773058","pred":"source","obj":"2_test"},{"subj":"32645325-20407419-20773059","pred":"source","obj":"2_test"},{"subj":"32645325-12191480-20773060","pred":"source","obj":"2_test"},{"subj":"32645325-24927547-20773061","pred":"source","obj":"2_test"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PD-FMA-UBERON","color":"#beec93","default":true},{"id":"LitCovid-PD-UBERON","color":"#ec93d8"},{"id":"LitCovid-PD-MONDO","color":"#93ece6"},{"id":"LitCovid-PD-CLO","color":"#eccc93"},{"id":"LitCovid-PD-CHEBI","color":"#b293ec"},{"id":"LitCovid-PD-GO-BP","color":"#93ec97"},{"id":"LitCovid-PD-HP","color":"#ec93a8"},{"id":"LitCovid-PubTator","color":"#93c2ec"},{"id":"LitCovid-sentences","color":"#dcec93"},{"id":"2_test","color":"#e293ec"}]}]}}