PMC:7321036 / 17105-17439 JSONTXT

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T118","span":{"begin":52,"end":59},"obj":"Body_part"},{"id":"T119","span":{"begin":60,"end":67},"obj":"Body_part"},{"id":"T120","span":{"begin":154,"end":161},"obj":"Body_part"},{"id":"T121","span":{"begin":162,"end":169},"obj":"Body_part"}],"attributes":[{"id":"A118","pred":"fma_id","subj":"T118","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A119","pred":"fma_id","subj":"T119","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A120","pred":"fma_id","subj":"T120","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A121","pred":"fma_id","subj":"T121","obj":"http://purl.org/sig/ont/fma/fma67257"}],"text":"To identify phosphorylation sites that may regulate protein-protein interactions, all sites were mapped to 3D structures, and solvent accessibility based protein-protein interface identification and recognition (SPPIDER) was used to assess whether sites resided within interface regions (Porollo and Meller 2007; Figure 2A; Table S2)."}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T1896","span":{"begin":320,"end":322},"obj":"http://purl.obolibrary.org/obo/CLO_0001236"},{"id":"T44759","span":{"begin":330,"end":332},"obj":"http://purl.obolibrary.org/obo/CLO_0008922"},{"id":"T25565","span":{"begin":330,"end":332},"obj":"http://purl.obolibrary.org/obo/CLO_0050052"}],"text":"To identify phosphorylation sites that may regulate protein-protein interactions, all sites were mapped to 3D structures, and solvent accessibility based protein-protein interface identification and recognition (SPPIDER) was used to assess whether sites resided within interface regions (Porollo and Meller 2007; Figure 2A; Table S2)."}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T98","span":{"begin":52,"end":59},"obj":"Chemical"},{"id":"T99","span":{"begin":60,"end":67},"obj":"Chemical"},{"id":"T100","span":{"begin":126,"end":133},"obj":"Chemical"},{"id":"T101","span":{"begin":154,"end":161},"obj":"Chemical"},{"id":"T102","span":{"begin":162,"end":169},"obj":"Chemical"},{"id":"T103","span":{"begin":330,"end":332},"obj":"Chemical"}],"attributes":[{"id":"A98","pred":"chebi_id","subj":"T98","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A99","pred":"chebi_id","subj":"T99","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A100","pred":"chebi_id","subj":"T100","obj":"http://purl.obolibrary.org/obo/CHEBI_46787"},{"id":"A101","pred":"chebi_id","subj":"T101","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A102","pred":"chebi_id","subj":"T102","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A103","pred":"chebi_id","subj":"T103","obj":"http://purl.obolibrary.org/obo/CHEBI_29387"}],"text":"To identify phosphorylation sites that may regulate protein-protein interactions, all sites were mapped to 3D structures, and solvent accessibility based protein-protein interface identification and recognition (SPPIDER) was used to assess whether sites resided within interface regions (Porollo and Meller 2007; Figure 2A; Table S2)."}

{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T92","span":{"begin":12,"end":27},"obj":"http://purl.obolibrary.org/obo/GO_0016310"}],"text":"To identify phosphorylation sites that may regulate protein-protein interactions, all sites were mapped to 3D structures, and solvent accessibility based protein-protein interface identification and recognition (SPPIDER) was used to assess whether sites resided within interface regions (Porollo and Meller 2007; Figure 2A; Table S2)."}

{"project":"LitCovid-sentences","denotations":[{"id":"T115","span":{"begin":0,"end":334},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"To identify phosphorylation sites that may regulate protein-protein interactions, all sites were mapped to 3D structures, and solvent accessibility based protein-protein interface identification and recognition (SPPIDER) was used to assess whether sites resided within interface regions (Porollo and Meller 2007; Figure 2A; Table S2)."}

{"project":"2_test","denotations":[{"id":"32645325-17152079-20773053","span":{"begin":307,"end":311},"obj":"17152079"}],"text":"To identify phosphorylation sites that may regulate protein-protein interactions, all sites were mapped to 3D structures, and solvent accessibility based protein-protein interface identification and recognition (SPPIDER) was used to assess whether sites resided within interface regions (Porollo and Meller 2007; Figure 2A; Table S2)."}