PMC:7321036 / 14980-16396
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T103 | 29-36 | Body_part | denotes | Protein | http://purl.org/sig/ont/fma/fma67257 |
| T104 | 53-57 | Body_part | denotes | Cell | http://purl.org/sig/ont/fma/fma68646 |
| T105 | 95-102 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T106 | 226-233 | Body_part | denotes | alanine | http://purl.org/sig/ont/fma/fma82749 |
| T107 | 604-612 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
| T108 | 795-802 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T109 | 922-929 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T110 | 1103-1106 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T111 | 1132-1139 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T6 | 715-719 | Body_part | denotes | Horn | http://purl.obolibrary.org/obo/UBERON_0006967 |
| T7 | 781-785 | Body_part | denotes | tail | http://purl.obolibrary.org/obo/UBERON_0002415 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T92 | 12-20 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T65738 | 53-57 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | Cell |
| T8679 | 59-60 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T36337 | 133-134 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T77791 | 474-475 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | B |
| T53156 | 781-785 | http://purl.obolibrary.org/obo/UBERON_0002415 | denotes | tail |
| T35402 | 1208-1209 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T72830 | 1255-1256 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T84 | 29-36 | Chemical | denotes | Protein | http://purl.obolibrary.org/obo/CHEBI_16541 |
| T85 | 95-102 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T86 | 226-233 | Chemical | denotes | alanine | http://purl.obolibrary.org/obo/CHEBI_16449 |
| T87 | 604-612 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T88 | 795-802 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T89 | 922-929 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T90 | 1132-1139 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T85 | 62-74 | http://purl.obolibrary.org/obo/GO_0051179 | denotes | Localization |
| T86 | 739-754 | http://purl.obolibrary.org/obo/GO_0016310 | denotes | Phosphorylation |
| T87 | 922-945 | http://purl.obolibrary.org/obo/GO_0006468 | denotes | protein phosphorylation |
| T88 | 930-945 | http://purl.obolibrary.org/obo/GO_0016310 | denotes | phosphorylation |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 257 | 12-22 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 259 | 226-233 | Chemical | denotes | alanine | MESH:D000409 |
| 261 | 972-985 | Species | denotes | coronaviruses | Tax:11118 |
| 264 | 1403-1407 | Gene | denotes | PDB2 | Gene:8792 |
| 265 | 1130-1131 | Gene | denotes | N | Gene:43740575 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T96 | 58-174 | Sentence | denotes | (A) Localization of PHs across viral protein sequences from this study and a previous study (Davidson et al., 2020). |
| T97 | 175-248 | Sentence | denotes | Stem height indicates predicted deleteriousness of alanine substitutions. |
| T98 | 249-394 | Sentence | denotes | Dot color indicates whether the residue is (true) or is not (false) predicted to form part of an interaction interface based on SPPIDER analysis. |
| T99 | 395-472 | Sentence | denotes | Positions with no structural coverage are excluded from interface prediction. |
| T100 | 473-625 | Sentence | denotes | (B) Distribution of secondary structure elements in which viral PHs were found, as classified by the define secondary structure of proteins (DSSP) tool. |
| T101 | 626-734 | Sentence | denotes | (C) Distribution of top matching host kinases to viral PHs according to NetPhorest tool (Horn et al., 2014). |
| T102 | 735-878 | Sentence | denotes | (D) Phosphorylation cluster in the C-terminal tail of the M protein (red residues) structure (Heo and Feig 2020) and associated sequence motif. |
| T103 | 879-902 | Sentence | denotes | Asterisks indicate PHs. |
| T104 | 903-986 | Sentence | denotes | (E) Alignment of M protein phosphorylation clusters across different coronaviruses. |
| T105 | 987-1010 | Sentence | denotes | Asterisks indicate PHs. |
| T106 | 1011-1145 | Sentence | denotes | (F) Surface electrostatic potential of non-phosphorylated (left) and phosphorylated (right) RNA-binding domains of the N protein (PDB: |
| T107 | 1146-1152 | Sentence | denotes | 6M3M). |
| T108 | 1153-1194 | Sentence | denotes | Positions of PHs are indicated by arrows. |
| T109 | 1195-1283 | Sentence | denotes | Blue denotes a positive charge potential, and red indicates a negative charge potential. |
| T110 | 1284-1416 | Sentence | denotes | Electrostatic potential was computed with the Advanced Poisson-Boltzmann Solver (APBS) tool after preparation with the PDB2PQR tool. |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32645325-24874572-20773051 | 728-732 | 24874572 | denotes | 2014 |