PMC:7321036 / 125871-130050 JSONTXT

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LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T822 4-7 PR:000000134 denotes owl
T826 23-24 SP_7 denotes s
T827 24-25 SO:0001026 denotes e
T833 41-43 GO:0042571 denotes by
T842 66-68 PR:000008220 denotes 39
T846 93-94 CHEBI:23888;CHEBI:23888 denotes u
T864 126-127 GO:0065007 denotes I
T871 140-141 PR:000017403 denotes 1
T880 167-168 SP_7 denotes 2
T883 174-175 CHEBI:51231;CHEBI:51231 denotes P
T886 175-176 GO:0051318 denotes 0
T888 176-177 GO:0051318 denotes 1
T906 220-221 SP_7 denotes 2
T937 259-260 CHEBI:36357;CHEBI:36357 denotes M
T938 260-262 PR:000010154 denotes 13
T941 278-279 PR:000010152 denotes 1
T943 280-281 PR:000010154 denotes 3
T946 281-282 SP_7 denotes 2
T952 294-296 CHEBI:35222;CHEBI:35222 denotes to
T954 301-302 SO:0000646 denotes M
T966 318-319 CHEBI:35222;CHEBI:35222 denotes o
T968 330-331 GO:0065007 denotes d
T972 337-338 SP_7 denotes 2
T981 375-376 CL_6 denotes r
T985 384-385 PR:000005951 denotes c
T994 402-403 PR:000010152 denotes 1
T1000 405-406 G_3;PG_10;PR:000003622 denotes 2
T1007 413-414 SO:0000646 denotes t
T1010 416-417 SO:0000704 denotes N
T1024 432-433 PR:000000103;GO:0000187 denotes a
T1025 433-434 GO:0000187 denotes n
T1027 438-441 CHEBI:36357;CHEBI:36357 denotes M.S
T1030 445-447 GO:0042571 denotes by
T1034 473-475 PR:000005950 denotes cs
T1037 492-497 GO:0031012 denotes xcell
T1038 499-500 GO:0019722 denotes c
T1039 505-506 SP_7 denotes R
T1040 512-513 SP_6;NCBITaxon:9606 denotes h
T1053 538-539 PR:000010152 denotes 1
T1054 539-540 PR:000008220 denotes 3
T1061 550-551 PR:000003622;G_3;PG_10 denotes 2
T1064 551-552 SP_7 denotes 2
T1074 557-558 SP_7 denotes v
T1075 558-561 GO:0006260 denotes ati
T1076 569-570 GO:0065007 denotes i
T1078 573-574 PR:000012719 denotes I
T1082 579-580 CHEBI:36357;CHEBI:36357 denotes u
T1083 580-581 CHEBI:35222;CHEBI:35222 denotes t
T1095 608-609 CHEBI:35222;CHEBI:35222 denotes b
T1099 640-641 NCBITaxon:10239;GO:0006260 denotes r
T1100 642-644 GO:0006260 denotes Re
T1104 653-654 GO:0006412 denotes r
T1108 684-685 NCBITaxon:10239 denotes A
T1110 687-688 SP_7 denotes -
T1111 688-689 CHEBI:23888;CHEBI:23888 denotes s
T1112 689-690 CHEBI:36357;CHEBI:36357 denotes u
T1113 694-697 GO:0065007 denotes ted
T1115 700-701 GO:0000165 denotes n
T1116 701-702 PR:000002190 denotes t
T1119 713-716 GO:0005856 denotes len
T1123 728-730 CHEBI:10545;CHEBI:10545 denotes en
T1124 738-739 GO:0019012;NCBITaxon:10239 denotes r
T1125 746-747 NCBITaxon:10239 denotes S
T1126 749-750 NCBITaxon:7742 denotes v
T1127 750-751 NCBITaxon:10376 denotes e
T1136 764-767 PR:000010849 denotes S;
T1138 778-779 SP_7 denotes S
T1139 780-781 SP_7 denotes 2
T1149 797-798 CHEBI:35222;CHEBI:35222 denotes o
T1155 818-822 NCBITaxon:11120 denotes ents
T1174 861-865 SP_7 denotes 1359
T1176 873-874 GO:0065007 denotes o
T1177 877-879 NCBITaxon:10239 denotes ra
T1180 892-893 PR:000008220 denotes P
T1185 898-899 NCBITaxon:7719 denotes F
T1197 937-938 PR:000008220 denotes p
T1203 954-955 PR:000008220 denotes 3
T1204 969-970 PR:000008220 denotes P
T1207 985-986 NCBITaxon:9606 denotes h
T1215 1004-1005 CL:0000763 denotes y
T1219 1018-1020 GO:0065007 denotes ea
T1220 1021-1022 GO:0005622;GO:0035556 denotes c
T1221 1022-1023 GO:0035556 denotes h
T1225 1052-1053 CHEBI:35222;CHEBI:35222 denotes n
T1226 1064-1067 GO:0065007 denotes lan
T1230 1073-1074 SP_7 denotes c
T1231 1075-1076 DG_28 denotes d
T1232 1076-1077 CHEBI:35222;CHEBI:35222 denotes o
T1233 1080-1083 GO:0006412 denotes ion
T1234 1083-1084 CHEBI:35222;CHEBI:35222 denotes s
T1238 1112-1113 GO:0009987 denotes o
T1243 1127-1128 CHEBI:36357;CHEBI:36357 denotes c
T1244 1140-1141 SP_7 denotes v
T1250 1155-1156 CHEBI:52217;CHEBI:52217 denotes m
T1256 1157-1158 CL_6 denotes r
T1257 1158-1159 CHEBI:23888;CHEBI:23888 denotes g
T1260 1169-1170 NCBITaxon:9986 denotes i
T1262 1172-1173 NCBITaxon:10088 denotes s
T1265 1176-1178 NCBITaxon:10088 denotes se
T1266 1186-1187 PR:000004397 denotes a
T1268 1190-1192 GO:0016020 denotes AN
T1280 1225-1226 CHEBI:75958;CHEBI:75958 denotes t
T1284 1244-1245 CHEBI:30059;CHEBI:30059 denotes n
T1288 1471-1473 GO:0042571 denotes ni
T1289 1476-1477 GO:0042571 denotes y
T1291 1482-1483 GO:0042571 denotes d
T1292 1484-1487 GO:0042571 denotes cat
T1294 1487-1489 GO:0042571 denotes io
T1295 1489-1490 GO:0042571 denotes n
T1296 1492-1494 GO:0042571 denotes nd
T1300 1502-1503 GO:0042571 denotes h
T1302 1506-1507 PR:000002123 denotes M
T1303 1507-1508 GO:0042571 denotes B
T1307 1512-1513 GO:0042571 denotes o
T1308 1516-1519 GO:0042571 denotes tat
T1309 1519-1520 PR:000001395 denotes i
T1310 1520-1521 GO:0042571 denotes o
T1312 1521-1522 GO:0042571 denotes n
T1316 1534-1535 GO:0042571 denotes n
T1320 1541-1544 GO:0042571 denotes ant
T1326 1553-1554 GO:0042571 denotes B
T1328 1556-1557 GO:0042571 denotes o
T1329 1567-1569 GO:0042571 denotes by
T1330 1571-1572 GO:0042571 denotes h
T1331 1572-1573 PR:000006071 denotes e
T1332 1574-1575 GO:0042571 denotes I
T1333 1575-1578 GO:0042571 denotes ntr
T1335 1582-1583 GO:0042571 denotes a
T1337 1600-1601 PR:000002121 denotes m
T1340 1618-1619 PR:000002123 denotes 1
T1344 1632-1633 PR:000002124 denotes 1
T1346 1636-1637 PR:000001992 denotes 3
T1347 1645-1646 PR:000006064 denotes 0
T1352 1656-1657 GO:0042571 denotes a
T1359 1672-1673 GO:0042571 denotes A
T1361 1676-1677 GO:0042571 denotes r
T1365 1678-1679 GO:0042571 denotes y
T1367 1680-1683 GO:0042571 denotes and
T1380 1715-1718 GO:0042571 denotes and
T1383 1728-1731 GO:0042571 denotes and
T1384 1732-1734 GO:0042571 denotes by
T1386 1738-1739 GO:0042571 denotes d
T1400 1791-1792 SP_7 denotes V
T1401 1793-1794 CL_6 denotes r
T1403 1862-1863 SP_7 denotes v
T1404 1863-1864 SO:0001026 denotes e
T1406 1867-1868 UBERON:0002048 denotes g
T1407 1878-1880 CL_7 denotes e
T1411 1880-1881 CL_4 denotes H
T1415 1887-1889 SP_6;NCBITaxon:9606 denotes Hu
T1417 1890-1891 SP_6;NCBITaxon:9606 denotes h
T1420 1894-1895 SP_6;NCBITaxon:9606;PG_10 denotes M
T1421 1895-1896 PG_10;PR:000003622 denotes e
T1424 1904-1905 SO:0001031 denotes s
T1431 2048-2049 CHEBI:10545;CHEBI:10545 denotes r
T1438 2105-2108 CL_6 denotes ver
T1441 2119-2120 CHEBI:16526;CHEBI:16526 denotes o
T1442 2130-2131 NCBITaxon:27592 denotes o
T1444 2132-2134 G_3;PG_10;PR:000003622 denotes ac
T1456 2146-2147 CL:0011108 denotes s
T1460 2169-2170 SP_6;NCBITaxon:9606 denotes n
T1463 2220-2222 SP_7 denotes s.
T1470 2291-2292 CHEBI:50144;CHEBI:50144 denotes r
T1471 2292-2294 CHEBI:46756;CHEBI:46756 denotes es
T1475 2365-2366 SP_7 denotes r
T1479 2389-2390 SO:0000704 denotes i
T1483 2427-2428 SP_7 denotes o
T1496 2457-2458 CHEBI:18219;CHEBI:18219 denotes B
T1499 2459-2460 CHEBI:50329;CHEBI:50329 denotes E
T1518 2579-2580 CHEBI:30751;CHEBI:30751 denotes F
T1538 2838-2839 UBERON:0001977 denotes u
T1541 2845-2847 GO:0016020 denotes M.
T1552 2895-2896 UBERON:0001851 denotes l
T1553 2898-2899 CHEBI:10545;CHEBI:10545 denotes C
T1556 2907-2909 CHEBI:10545;CHEBI:10545 denotes er
T1557 2911-2913 CHEBI:10545;CHEBI:10545 denotes en
T1558 2913-2914 CHEBI:10545;CHEBI:10545 denotes t
T1559 2919-2920 CHEBI:64276;CHEBI:64276 denotes R
T1584 3023-3024 CL_4 denotes K
T1592 3063-3064 GO:0009293 denotes R
T1603 3090-3091 CHEBI:18219;CHEBI:18219 denotes b
T1627 3164-3165 GO:0000279 denotes M
T1636 3190-3194 BV_21 denotes L.S.
T1640 3210-3212 BV_27 denotes se
T1658 3265-3266 PR:000002123 denotes i
T1667 3266-3268 PR:000002139 denotes on
T1697 3272-3273 GO:0042571 denotes S
T1702 3296-3297 NCBITaxon:10239 denotes L
T1705 3300-3301 CL_6 denotes E
T1713 3332-3333 CHEBI:51231;CHEBI:51231 denotes i
T1732 3394-3395 GO:0010467 denotes R
T1736 3404-3407 GO:0009294 denotes ect
T1737 3407-3408 SO:0000646 denotes r
T1754 3482-3483 SO:0001026 denotes S
T1760 3509-3510 CHEBI:2511;CHEBI:2511 denotes G
T1775 3742-3744 SO:0001811 denotes he
T1776 3776-3777 SP_6;NCBITaxon:9606 denotes a
T1785 3810-3811 NCBITaxon:6239 denotes c
T1788 3814-3815 NCBITaxon:9606 denotes i
T1793 3844-3845 NCBITaxon:9606 denotes B
T1802 3939-3942 SO:0001811 denotes rti
T1804 4056-4058 CHEBI:32958;CHEBI:32958 denotes Ph
T1811 4143-4144 GO:0006468 denotes l
T1812 4144-4145 GO:0043234 denotes s
T1813 4145-4151 GO:0043234 denotes pring
T1814 4158-4161 GO:0043234 denotes nce
T1816 4167-4170 GO:0032991 denotes xes
T1817 4171-4172 GO:0032991 denotes P
T573 3402-3410 CHEBI:10545;CHEBI:10545 denotes Electron

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T71 2893-2897 Body_part denotes Cell http://purl.org/sig/ont/fma/fma68646
T72 3206-3209 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T73 3336-3339 Body_part denotes Map http://purl.org/sig/ont/fma/fma67847

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T410 655-664 Disease denotes Influenza http://purl.obolibrary.org/obo/MONDO_0005812
T411 723-732 Disease denotes Influenza http://purl.obolibrary.org/obo/MONDO_0005812
T412 1163-1173 Disease denotes Infectious http://purl.obolibrary.org/obo/MONDO_0005550
T413 1672-1679 Disease denotes Allergy http://purl.obolibrary.org/obo/MONDO_0005271
T414 1684-1694 Disease denotes Infectious http://purl.obolibrary.org/obo/MONDO_0005550
T415 2191-2199 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T416 2420-2429 Disease denotes Infection http://purl.obolibrary.org/obo/MONDO_0005550
T417 2932-2941 Disease denotes Infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T205 680-681 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T206 1314-1315 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T207 2202-2207 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T208 2691-2696 http://purl.obolibrary.org/obo/CLO_0001627 denotes A., A
T209 2830-2835 http://purl.obolibrary.org/obo/CLO_0001627 denotes A., A
T210 2893-2897 http://purl.obolibrary.org/obo/GO_0005623 denotes Cell
T211 3224-3225 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T212 3625-3628 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T213 3711-3714 http://purl.obolibrary.org/obo/CLO_0051582 denotes has

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T68283 521-524 Chemical denotes ERA http://purl.obolibrary.org/obo/CHEBI_51451
T21380 1288-1290 Chemical denotes ID http://purl.obolibrary.org/obo/CHEBI_141439
T92160 1778-1780 Chemical denotes La http://purl.obolibrary.org/obo/CHEBI_33336
T27672 2152-2154 Chemical denotes Ho http://purl.obolibrary.org/obo/CHEBI_49648
T53882 3694-3696 Chemical denotes La http://purl.obolibrary.org/obo/CHEBI_33336

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T67 665-677 http://purl.obolibrary.org/obo/GO_0009405 denotes Pathogenesis
T68 2893-2903 http://purl.obolibrary.org/obo/GO_0007049 denotes Cell Cycle

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T16 1672-1679 Phenotype denotes Allergy http://purl.obolibrary.org/obo/HP_0012393
T17 4022-4030 Phenotype denotes Oncology http://purl.obolibrary.org/obo/HP_0002664

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1007 0-15 Sentence denotes Acknowledgments
T1008 16-1768 Sentence denotes This research was funded by grants from the 10.13039/100000002National Institutes of Health (P50AI150476, U19AI135990, U19AI135972, R01AI143292, R01AI120694, P01A1063302, and R01AI122747 to N.J.K.; 1R01CA221969 and 1R01CA244550 to K.M.S.; R01GM133981 to D.L.S.; 1F32CA236347-01 to J.E.M.; U19AI118610 to J.R.J.; and F32CA239333 to M.B.), Defense Advance Research Projects Agency HR0011-19-2-0020 (to N.J.K., A.G.S., and K.M.S.); by the Laboratory for Genomics Research (LGR) Excellence in Research Award (ERA) from the 10.13039/100014220Innovative Genomics Institute at UC Berkeley (grant number 133122P); by CRIP (Center for Research for Influenza Pathogenesis), a NIAID-supported Center of Excellence for Influenza Research and Surveillance (CEIRS; contract HHSN272201400008C) (to A.G.S.); by supplements to 10.13039/100000060NIAID grant U19AI135972 and DoD grant W81XWH-19-PRMRP-FPA (to A.G.S.); and by the generous support of the 10.13039/100007457JPB Foundation, the Open Philanthropy Project (research grant 2020-215611 [5384]), and other philanthropic donations (to A.G.S.); by the Laboratoire d’Excellence “Integrative Biology of Emerging Infectious Diseases” grant ANR-10-LABX-62-IBEID (to M.V.); by the DFG under Germany's Excellence Strategy (EXC-2189, project ID 390939984 to R.G.); by a Starting Grant Award from the 10.13039/501100000781European Research Council (ERC-2014-STG 638884 PhosFunc to P.B.); by the 10.13039/501100002347Federal Ministry of Education and Research (BMBF, Computational Life Sciences grant 031L0181B to J.S.R.); by the Intramural Research Program of the 10.13039/100000002NIH, 10.13039/100000060National Institute of Allergy and Infectious Diseases (to E.R.F. and E.D.W.); and by funding from 10.13039/100007013F.
T1009 1769-1846 Sentence denotes Hoffmann-La Roche and Vir Biotechnology and gifts from The Ron Conway Family.
T1010 1847-1912 Sentence denotes K.M.S. is an investigator of the Howard Hughes Medical Institute.
T1011 1913-2102 Sentence denotes The views, opinions, and findings contained in this study are those of the authors and do not represent the official views, policies, or endorsement of the Department of Defense or the U.S.
T1012 2103-2114 Sentence denotes Government.
T1013 2115-2222 Sentence denotes We would like to acknowledge Desiree Ho, Innovative Genomics Institute, for SARS-CoV-2 virus illustrations.
T1014 2223-2352 Sentence denotes We thank Randy Albert for support with the BSL3 facility and procedures at the Icahn School of Medicine at Mount Sinai, New York.
T1015 2354-2374 Sentence denotes Author Contributions
T1016 2375-2697 Sentence denotes Conceptualization, M.B., D.L.S., and N.J.K.; Infection Experiments, B.M., V.V.R., B.E.N., L.M., C.K., Q.D.T., A.H., T.V., K.M.W., and E.M.; Proteomics Sample Coordination and Preparation, E.S., M.S., J.M.F., J.Z.G., and J.X.; Proteomics Data Acquisition, A.L.R. and D.L.S.; Data Analysis, M.C.M., B.J.P., D.M., C.H.-A., A.
T1017 2698-2708 Sentence denotes Dunham, M.
T1018 2709-2836 Sentence denotes Modak, D.Q., Y.Z., J.R.J., D.L.S., P.B., J.K.L., M.G., M.B., and C.J.P.M.; Figure Generation, M.C.M., B.J.P., D.M., C.H.-A., A.
T1019 2837-2847 Sentence denotes Dunham, M.
T1020 2848-3103 Sentence denotes Modak, D.Q., J.R.J., D.L.S., P.B., and M.B.; Cell Cycle Experiments, R.R. and B.M.; Infection Imaging, S.W., J.K., S.U., G.K., and R.G.; Manuscript Preparation, M.B., D.E.G., K.O., J.R.J., D.L.S., P.B., N.J.K., and R.D.M.; Literature Review, by R.M.K., M.
T1021 3104-3149 Sentence denotes Modak, J.B., A.R., T.P., Q.L., R.H., M.C., M.
T1022 3150-3226 Sentence denotes Muralidharan, M.K., G.J., B.T., J.H., D.L.S., and M.B.; RNA-seq Analysis, A.
T1023 3227-3576 Sentence denotes Dugourd, A.V., and J.S.-R.; Drug Curation, Y.S., J.E.M., K.M.S., A.R.L., E.J.M., E.F., and S.B.; Interactive Map, T.M., M.C.O., Y.C., J.C.J.C., D.J.B, S.K., M.B., and R.M.K.; Electron Microscopy, E.R.F. and E.D.w.; Work Supervision, T.K., J.K.L., A.G., B.S., M.O., J.S.-R., G.K., R.G., B.R.t., K.M.S., J.R.J., D.L.S., A.G.-S., M.V., P.B., and N.J.K.
T1024 3578-3602 Sentence denotes Declaration of Interests
T1025 3603-3684 Sentence denotes The Krogan laboratory has received research support from Vir Biotechnology and F.
T1026 3685-3703 Sentence denotes Hoffmann-La Roche.
T1027 3704-3806 Sentence denotes K.M.S. has consulting agreements for the following companies involving cash and/or stock compensation:
T1028 3807-4074 Sentence denotes Black Diamond Therapeutics, BridGene Biosciences, Denali Therapeutics, Dice Molecules, eFFECTOR Therapeutics (zotatifin and tomivosertib), Erasca, Genentech/Roche, Janssen Pharmaceuticals, Kumquat Biosciences, Kura Oncology, Merck, Mitokinin, Petra Pharma, Qulab Inc.
T1029 4075-4179 Sentence denotes Revolution Medicines (WDB002), Type6 Therapeutics, Venthera, and Wellspring Biosciences (Araxes Pharma).