PMC:7321036 / 124778-125038 JSONTXT

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LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T419 25-26 GO:0006915 denotes t
T420 31-33 GO:0006260 denotes ri
T421 33-39 SO:0001811 denotes ption
T426 58-60 GO:0008150 denotes ro
T428 64-66 SP_7 denotes A-
T430 86-92 SP_7 denotes -CoV-2
T431 93-94 NCBITaxon:10239 denotes i
T453 146-147 GO:0000165 denotes l
T466 174-175 GO:0051235 denotes E
T495 202-203 PR:000008800 denotes 9
T498 206-207 CHEBI:23888;CHEBI:23888 denotes G
T510 221-222 GO:0006338 denotes E
T511 222-223 GO:0032991 denotes S
T514 227-229 GO:0065007 denotes re
T516 241-242 SO:0005836;GO:0065007 denotes l
T517 244-246 SO:0005836 denotes es
T518 253-254 PR:000008800 denotes p
T521 255-256 GO:0005680 denotes c
T523 256-257 GO:0065007 denotes t
T524 257-258 GO:0005856 denotes e

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T58 62-65 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T59 108-112 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T60 113-117 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T61 206-210 Body_part denotes Gene http://purl.org/sig/ont/fma/fma74402
T62 236-240 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T34 108-112 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T408 82-90 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T177 46-56 http://purl.obolibrary.org/obo/CLO_0001658 denotes activities
T178 102-107 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T179 108-112 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T180 108-112 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T181 113-123 http://purl.obolibrary.org/obo/CLO_0000031 denotes cell lines
T182 206-210 http://purl.obolibrary.org/obo/OGG_0000000002 denotes Gene
T183 236-246 http://purl.obolibrary.org/obo/CLO_0000031 denotes cell lines

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T61 25-56 http://purl.obolibrary.org/obo/GO_0003700 denotes transcription factor activities
T62 25-45 http://purl.obolibrary.org/obo/GO_0000981 denotes transcription factor
T63 25-38 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T995 0-155 Sentence denotes Full results of computed transcription factor activities from RNA-seq analysis of SARS-CoV-2 infected human lung cell lines (GSE147507) (Blanco-Melo et al.
T996 156-198 Sentence denotes 2020) using DoRothEA (Garcia-Alonso et al.
T997 199-205 Sentence denotes 2019).
T998 206-260 Sentence denotes Gene symbols, NES scores, and cell lines are depicted.