PMC:7321036 / 111429-112373 JSONTXT

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LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T209 270-337 SO:0000704 denotes g the same Z-test based approach described for estimation of kinase

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T39 16-33 Body_part denotes protein complexes http://purl.org/sig/ont/fma/fma67906
T40 16-23 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T41 150-165 Body_part denotes protein complex http://purl.org/sig/ont/fma/fma67906
T42 235-242 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T87 16-33 http://purl.obolibrary.org/obo/GO_0043234 denotes protein complexes
T88 148-149 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T89 150-165 http://purl.obolibrary.org/obo/GO_0043234 denotes protein complex
T90 283-287 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T91 338-348 http://purl.obolibrary.org/obo/CLO_0001658 denotes activities
T92 560-564 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T93 665-666 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T94 749-754 http://purl.obolibrary.org/obo/OGG_0000000002 denotes genes
T95 816-817 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T60056 16-23 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T88216 150-157 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T23786 235-242 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T30 331-348 http://purl.obolibrary.org/obo/GO_0016301 denotes kinase activities
T31 396-411 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T32 513-528 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T948 0-96 Sentence denotes Annotations for protein complexes were obtained from CORUM v3.0 database (Giurgiu et al., 2019).
T949 97-349 Sentence denotes Overall significance of changes of phosphosites of a protein complex was inferred from the log2 fold change of individual phosphosites of protein members of the complex using the same Z-test based approach described for estimation of kinase activities.
T950 350-473 Sentence denotes Among the 3512 complexes, 1070 complexes with phosphorylation changes obtained from 4 or more phosphosites were considered.
T951 474-599 Sentence denotes Of these, 67 complexes had significant phosphorylation change (-log10(p value) from Z-test > 2.5) in at least one time point.
T952 600-790 Sentence denotes In order to select non-redundant complexes, we first constructed a complex term tree based on distances (1-Jaccard Similarity Coefficients of shared genes) between the significant complexes.
T953 791-892 Sentence denotes The term tree was cut at a specific level (h = 0.99) to identify clusters of non-redundant complexes.
T954 893-944 Sentence denotes The largest complex was selected from each cluster.

2_test

Id Subject Object Predicate Lexical cue
32645325-30357367-20773122 90-94 30357367 denotes 2019