PMC:7321036 / 111392-112373 JSONTXT

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LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T209 307-374 SO:0000704 denotes g the same Z-test based approach described for estimation of kinase

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T37 19-36 Body_part denotes protein complexes http://purl.org/sig/ont/fma/fma67906
T38 19-26 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T39 53-70 Body_part denotes protein complexes http://purl.org/sig/ont/fma/fma67906
T40 53-60 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T41 187-202 Body_part denotes protein complex http://purl.org/sig/ont/fma/fma67906
T42 272-279 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T86 19-36 http://purl.obolibrary.org/obo/GO_0043234 denotes protein complexes
T87 53-70 http://purl.obolibrary.org/obo/GO_0043234 denotes protein complexes
T88 185-186 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T89 187-202 http://purl.obolibrary.org/obo/GO_0043234 denotes protein complex
T90 320-324 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T91 375-385 http://purl.obolibrary.org/obo/CLO_0001658 denotes activities
T92 597-601 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T93 702-703 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T94 786-791 http://purl.obolibrary.org/obo/OGG_0000000002 denotes genes
T95 853-854 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T66599 19-26 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T60056 53-60 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T88216 187-194 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T23786 272-279 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T29 0-15 http://purl.obolibrary.org/obo/GO_0016310 denotes Phosphorylation
T30 368-385 http://purl.obolibrary.org/obo/GO_0016301 denotes kinase activities
T31 433-448 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T32 550-565 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T947 0-36 Sentence denotes Phosphorylation of protein complexes
T948 37-133 Sentence denotes Annotations for protein complexes were obtained from CORUM v3.0 database (Giurgiu et al., 2019).
T949 134-386 Sentence denotes Overall significance of changes of phosphosites of a protein complex was inferred from the log2 fold change of individual phosphosites of protein members of the complex using the same Z-test based approach described for estimation of kinase activities.
T950 387-510 Sentence denotes Among the 3512 complexes, 1070 complexes with phosphorylation changes obtained from 4 or more phosphosites were considered.
T951 511-636 Sentence denotes Of these, 67 complexes had significant phosphorylation change (-log10(p value) from Z-test > 2.5) in at least one time point.
T952 637-827 Sentence denotes In order to select non-redundant complexes, we first constructed a complex term tree based on distances (1-Jaccard Similarity Coefficients of shared genes) between the significant complexes.
T953 828-929 Sentence denotes The term tree was cut at a specific level (h = 0.99) to identify clusters of non-redundant complexes.
T954 930-981 Sentence denotes The largest complex was selected from each cluster.

2_test

Id Subject Object Predicate Lexical cue
32645325-30357367-20773122 127-131 30357367 denotes 2019