PMC:7321036 / 105528-106007 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T22 177-184 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T23 206-213 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T39 204-205 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T40 319-326 http://purl.obolibrary.org/obo/PR_000018263 denotes peptide

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T99637 177-184 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T47385 206-213 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T11669 319-326 Chemical denotes peptide http://purl.obolibrary.org/obo/CHEBI_16670
T20385 327-330 Chemical denotes ion http://purl.obolibrary.org/obo/CHEBI_24870

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T13 119-134 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
2324 79-87 Disease denotes infected MESH:D007239
2325 235-243 Disease denotes infected MESH:D007239

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T908 0-158 Sentence denotes Significance filters of adjusted p value < 0.05 and absolute log2 fold change (infected/mock) > 1 were applied to both phosphorylation and abundance datasets.
T909 159-366 Sentence denotes Additionally, for protein abundance data, if a protein was detected in only infected but not mock, or vice versa, we required detection in 3 replicates or by 3 peptide ion fragments in at least 2 replicates.
T910 367-479 Sentence denotes These significance-filtered data were used for enrichment analyses and counts of significant effects (Figure 1).