PMC:7318948 / 2430-3326 JSON TXT

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Id	Subject	Object	Predicate	Lexical cue
T48	34-40	UBERON:0002113	denotes	kidney
T49	45-50	UBERON:0002107	denotes	liver
T50	173-179	UBERON:0002048	denotes	breath
T51	336-341	UBERON:0001443	denotes	chest
T52	435-443	SP_7	denotes	COVID-19
T53	556-561	CL:0000738	denotes	white
T54	562-567	CL:0000738;UBERON:0000178	denotes	blood
T55	568-572	CL:0000738	denotes	cell
T56	618-628	CL:0000542	denotes	lymphocyte
T57	655-660	UBERON:0002107	denotes	liver
T58	677-692	NCBITaxon:10358	denotes	Cytomegalovirus
T59	697-707	NCBITaxon:517	denotes	Bordetella
T60	750-767	CHEBI:35705;CHEBI:35705	denotes	immunosuppressant
T61	789-806	CHEBI:168396;CHEBI:168396	denotes	mycophenolic acid
T62	829-839	CHEBI:8382;CHEBI:8382	denotes	prednisone
T32180	34-40	UBERON:0002113	denotes	kidney
T73190	45-50	UBERON:0002107	denotes	liver
T53403	173-179	UBERON:0002048	denotes	breath
T23752	336-341	UBERON:0001443	denotes	chest
T80248	435-443	SP_7	denotes	COVID-19
T51573	556-561	CL:0000738	denotes	white
T84453	562-567	CL:0000738;UBERON:0000178	denotes	blood
T13289	568-572	CL:0000738	denotes	cell
T23080	618-628	CL:0000542	denotes	lymphocyte
T19421	655-660	UBERON:0002107	denotes	liver
T296	677-692	NCBITaxon:10358	denotes	Cytomegalovirus
T32770	697-707	NCBITaxon:517	denotes	Bordetella
T82516	750-767	CHEBI:35705;CHEBI:35705	denotes	immunosuppressant
T81314	789-806	CHEBI:168396;CHEBI:168396	denotes	mycophenolic acid
T93225	829-839	CHEBI:8382;CHEBI:8382	denotes	prednisone

Id	Subject	Object	Predicate	Lexical cue	fma_id
T17	34-40	Body_part	denotes	kidney	http://purl.org/sig/ont/fma/fma7203
T18	45-50	Body_part	denotes	liver	http://purl.org/sig/ont/fma/fma7197
T19	336-341	Body_part	denotes	chest	http://purl.org/sig/ont/fma/fma9576
T20	556-572	Body_part	denotes	white blood cell	http://purl.org/sig/ont/fma/fma62852
T21	568-572	Body_part	denotes	cell	http://purl.org/sig/ont/fma/fma68646
T22	618-628	Body_part	denotes	lymphocyte	http://purl.org/sig/ont/fma/fma62863
T23	655-660	Body_part	denotes	liver	http://purl.org/sig/ont/fma/fma7197

Id	Subject	Object	Predicate	Lexical cue	uberon_id
T11	34-40	Body_part	denotes	kidney	http://purl.obolibrary.org/obo/UBERON_0002113
T12	45-50	Body_part	denotes	liver	http://purl.obolibrary.org/obo/UBERON_0002107
T13	336-341	Body_part	denotes	chest	http://purl.obolibrary.org/obo/UBERON_0001443
T14	562-567	Body_part	denotes	blood	http://purl.obolibrary.org/obo/UBERON_0000178
T15	655-660	Body_part	denotes	liver	http://purl.obolibrary.org/obo/UBERON_0002107

Id	Subject	Object	Predicate	Lexical cue	mondo_id
T24	421-430	Disease	denotes	influenza	http://purl.obolibrary.org/obo/MONDO_0005812
T25	435-443	Disease	denotes	COVID-19	http://purl.obolibrary.org/obo/MONDO_0100096
T26	540-542	Disease	denotes	he	http://purl.obolibrary.org/obo/MONDO_0017319

Id	Subject	Object	Predicate	Lexical cue
T37	15-16	http://purl.obolibrary.org/obo/CLO_0001020	denotes	a
T38	29-33	http://purl.obolibrary.org/obo/UBERON_0003101	denotes	male
T39	29-33	http://www.ebi.ac.uk/efo/EFO_0000970	denotes	male
T40	34-40	http://purl.obolibrary.org/obo/UBERON_0002113	denotes	kidney
T41	34-40	http://www.ebi.ac.uk/efo/EFO_0000927	denotes	kidney
T42	34-40	http://www.ebi.ac.uk/efo/EFO_0000929	denotes	kidney
T43	45-50	http://purl.obolibrary.org/obo/UBERON_0002107	denotes	liver
T44	45-50	http://www.ebi.ac.uk/efo/EFO_0000887	denotes	liver
T45	287-288	http://purl.obolibrary.org/obo/CLO_0001020	denotes	a
T46	336-341	http://www.ebi.ac.uk/efo/EFO_0000965	denotes	chest
T47	401-407	http://purl.obolibrary.org/obo/UBERON_0000473	denotes	tested
T48	547-548	http://purl.obolibrary.org/obo/CLO_0001020	denotes	a
T49	562-567	http://www.ebi.ac.uk/efo/EFO_0000296	denotes	blood
T50	568-572	http://purl.obolibrary.org/obo/GO_0005623	denotes	cell
T51	655-660	http://purl.obolibrary.org/obo/UBERON_0002107	denotes	liver
T52	655-660	http://www.ebi.ac.uk/efo/EFO_0000887	denotes	liver
T53	670-675	http://purl.obolibrary.org/obo/UBERON_0000473	denotes	tests
T54	890-891	http://purl.obolibrary.org/obo/CLO_0001020	denotes	a

Id	Subject	Object	Predicate	Lexical cue	chebi_id
T16	29-33	Chemical	denotes	male	http://purl.obolibrary.org/obo/CHEBI_30780
T17	115-117	Chemical	denotes	ED	http://purl.obolibrary.org/obo/CHEBI_73503
T18	315-322	Chemical	denotes	Celsius	http://purl.obolibrary.org/obo/CHEBI_145500
T19	750-767	Chemical	denotes	immunosuppressant	http://purl.obolibrary.org/obo/CHEBI_35705
T20	789-806	Chemical	denotes	mycophenolic acid	http://purl.obolibrary.org/obo/CHEBI_168396
T21	802-806	Chemical	denotes	acid	http://purl.obolibrary.org/obo/CHEBI_37527
T22	829-839	Chemical	denotes	prednisone	http://purl.obolibrary.org/obo/CHEBI_8382
T23	860-870	Chemical	denotes	tacrolimus	http://purl.obolibrary.org/obo/CHEBI_61049\|http://purl.obolibrary.org/obo/CHEBI_61057

Id	Subject	Object	Predicate	Lexical cue	tao:has_database_id
92	4-11	Species	denotes	patient	Tax:9606
93	789-806	Chemical	denotes	mycophenolic acid	MESH:D009173
94	829-839	Chemical	denotes	prednisone	MESH:D011241
95	860-870	Chemical	denotes	tacrolimus	MESH:D016559
96	29-40	Disease	denotes	male kidney	MESH:D018567
97	153-158	Disease	denotes	fever	MESH:D005334
98	160-179	Disease	denotes	shortness of breath	MESH:D004417
99	185-190	Disease	denotes	cough	MESH:D003371
100	315-322	Disease	denotes	Celsius
101	435-443	Disease	denotes	COVID-19	MESH:C000657245

Id	Subject	Object	Predicate	Lexical cue	hp_id
T8	148-158	Phenotype	denotes	mild fever	http://purl.obolibrary.org/obo/HP_0011134
T9	160-179	Phenotype	denotes	shortness of breath	http://purl.obolibrary.org/obo/HP_0002098
T10	185-190	Phenotype	denotes	cough	http://purl.obolibrary.org/obo/HP_0012735

Id	Subject	Object	Predicate	Lexical cue
T18	0-191	Sentence	denotes	The patient is a 63-year-old male kidney and liver transplant recipient who presented to the Emergency Department (ED) after developing symptoms of mild fever, shortness of breath, and cough.
T19	192-323	Sentence	denotes	His vitals and physical exam in the Emergency Department were within normal limits, except for a temperature of 38 degrees Celsius.
T20	324-397	Sentence	denotes	His initial chest x-ray on the day of admission (Day 1) was unremarkable.
T21	398-513	Sentence	denotes	He tested negative for influenza and COVID-19 via polymerase chain reaction (PCR) and was admitted to the hospital.
T22	514-676	Sentence	denotes	At the time of admission, he had a normal white blood cell count (6.94 × 109/liter), decreased absolute lymphocyte count (2.9 %), and normal liver function tests.
T23	677-740	Sentence	denotes	Cytomegalovirus and Bordetella PCR serology were also negative.
T24	741-896	Sentence	denotes	His home immunosuppressant regimen consisted of mycophenolic acid 500 milligrams daily, prednisone 5 milligrams daily, tacrolimus 2 milligrams twice a day.