PMC:7317266 / 4449-6637
Annnotations
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T21 | 154-163 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
| T22 | 597-621 | Disease | denotes | coronavirus disease-2019 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T23 | 623-631 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T24 | 765-773 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T25 | 1112-1145 | Disease | denotes | severe acute respiratory syndrome | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T26 | 1147-1151 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T27 | 1254-1258 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T28 | 1277-1281 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T29 | 1295-1303 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T30 | 1295-1299 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T31 | 1311-1319 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T32 | 1311-1315 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T78 | 50-51 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T79 | 265-266 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T80 | 406-408 | http://purl.obolibrary.org/obo/CLO_0053733 | denotes | 11 |
| T81 | 428-440 | http://purl.obolibrary.org/obo/OBI_0000245 | denotes | Organization |
| T82 | 470-471 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T83 | 636-638 | http://purl.obolibrary.org/obo/CLO_0053733 | denotes | 11 |
| T84 | 742-744 | http://purl.obolibrary.org/obo/CLO_0053733 | denotes | 11 |
| T85 | 777-778 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T86 | 983-991 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human is |
| T87 | 1228-1233 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T88 | 1306-1308 | http://purl.obolibrary.org/obo/CLO_0050510 | denotes | 18 |
| T89 | 1435-1437 | http://purl.obolibrary.org/obo/CLO_0050510 | denotes | 18 |
| T90 | 1511-1514 | http://purl.obolibrary.org/obo/CLO_0002807 | denotes | don |
| T91 | 1527-1529 | http://purl.obolibrary.org/obo/CLO_0037161 | denotes | en |
| T92 | 1731-1734 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T93 | 1765-1767 | http://purl.obolibrary.org/obo/CLO_0050509 | denotes | 27 |
| T94 | 1783-1788 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T95 | 2047-2053 | http://purl.obolibrary.org/obo/NCBITaxon_9837 | denotes | camels |
| T96 | 2057-2062 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
| T97 | 2112-2113 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T5 | 1527-1529 | Chemical | denotes | en | http://purl.obolibrary.org/obo/CHEBI_30347 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 123 | 360-366 | Species | denotes | people | Tax:9606 |
| 124 | 881-887 | Species | denotes | people | Tax:9606 |
| 125 | 154-163 | Disease | denotes | pneumonia | MESH:D011014 |
| 126 | 169-174 | Disease | denotes | fever | MESH:D005334 |
| 127 | 179-199 | Disease | denotes | respiratory distress | MESH:D012128 |
| 128 | 597-621 | Disease | denotes | coronavirus disease-2019 | MESH:C000657245 |
| 129 | 623-631 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 130 | 765-773 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 131 | 906-912 | Disease | denotes | deaths | MESH:D003643 |
| 148 | 925-936 | Species | denotes | coronavirus | Tax:11118 |
| 149 | 959-970 | Species | denotes | Coronavirus | Tax:11118 |
| 150 | 983-988 | Species | denotes | human | Tax:9606 |
| 151 | 1092-1103 | Species | denotes | coronavirus | Tax:11118 |
| 152 | 1277-1293 | Species | denotes | SARS coronavirus | Tax:694009 |
| 153 | 1295-1303 | Species | denotes | SARS-CoV | Tax:694009 |
| 154 | 1311-1319 | Species | denotes | SARS-CoV | Tax:694009 |
| 155 | 1381-1387 | Species | denotes | people | Tax:9606 |
| 156 | 1587-1598 | Species | denotes | coronavirus | Tax:11118 |
| 157 | 1835-1890 | Species | denotes | Middle East respiratory syndrome coronavirus (MERS-CoV) | Tax:1335626 |
| 158 | 1906-1958 | Species | denotes | Middle East respiratory syndrome-related coronavirus | Tax:1335626 |
| 159 | 1971-1986 | Species | denotes | Betacoronavirus | Tax:694002 |
| 160 | 1988-1996 | Species | denotes | MERS-CoV | Tax:1335626 |
| 161 | 2037-2046 | Species | denotes | dromedary | Tax:9838 |
| 162 | 2047-2053 | Species | denotes | camels | Tax:9838 |
| 163 | 2057-2062 | Species | denotes | human | Tax:9606 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T37 | 0-12 | Sentence | denotes | The outbreak |
| T38 | 13-118 | Sentence | denotes | In the second week of December 2019, a serious public health threat surfaced in the city of Wuhan, China. |
| T39 | 119-200 | Sentence | denotes | The major disease symptoms were of pneumonia with fever and respiratory distress. |
| T40 | 201-307 | Sentence | denotes | The cause of the disease was unknown; however, it was linked to a local wholesale wet market in Wuhan [9]. |
| T41 | 308-410 | Sentence | denotes | Between December 2019 and January 2020 about 75,000 people were affected by the disease in Wuhan [11]. |
| T42 | 411-544 | Sentence | denotes | The World Health Organization (WHO) declared this event as a public health emergency of international concern on the 30 January 2020. |
| T43 | 545-653 | Sentence | denotes | The name of the new disease was announced by WHO as coronavirus disease-2019 (COVID-19) on 11 February 2020. |
| T44 | 654-733 | Sentence | denotes | The disease was highly transmissible and soon it had spread to other countries. |
| T45 | 734-796 | Sentence | denotes | WHO, on 11 March 2020 declared COVID-19 as a pandemic disease. |
| T46 | 797-913 | Sentence | denotes | By 23 June 2020, it had spread to 213 countries and territories infecting 9,193,156 people including 4,74467 deaths. |
| T47 | 914-958 | Sentence | denotes | Currently, coronavirus is shaking the world. |
| T48 | 959-1069 | Sentence | denotes | Coronavirus outbreak in human is not new, during the last 2 decades, there were two more episodes of epidemic. |
| T49 | 1070-1217 | Sentence | denotes | The first epidemic of coronavirus causing severe acute respiratory syndrome (SARS) broke out during November 2003 in Guangdong province, China [4]. |
| T50 | 1218-1310 | Sentence | denotes | Soon, the virus associated with the SARS was identified as SARS coronavirus (SARS-CoV) [18]. |
| T51 | 1311-1388 | Sentence | denotes | SARS-CoV had spread to 29 countries and territories killing about 774 people. |
| T52 | 1389-1532 | Sentence | denotes | The major epidemic lasted for 8 months and by 18 May 2004, WHO announced the end of the epidemic (https://www.who.int/csr/don/2004_05_18a/en/). |
| T53 | 1533-1639 | Sentence | denotes | The second epidemic of respiratory syndrome caused by coronavirus emerged during 2012 in Saudi Arabia [1]. |
| T54 | 1640-1778 | Sentence | denotes | Subsequently, the major disease outbreak occurred in the Middle East countries, however it has been reported from as many as 27 countries. |
| T55 | 1779-1987 | Sentence | denotes | The virus associated with the disease was identified as Middle East respiratory syndrome coronavirus (MERS-CoV) of the species Middle East respiratory syndrome-related coronavirus under genus Betacoronavirus. |
| T56 | 1988-2188 | Sentence | denotes | MERS-CoV, which was shown to be transmitted from dromedary camels to human, continues to spread as the update of WHO showed a total of 2519 confirmed cases of MERS globally at the end of January 2020. |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T3 | 154-163 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
| T4 | 169-174 | Phenotype | denotes | fever | http://purl.obolibrary.org/obo/HP_0001945 |
| T5 | 179-199 | Phenotype | denotes | respiratory distress | http://purl.obolibrary.org/obo/HP_0002098 |
LitCovid-PMC-OGER-BB
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T151 | 179-190 | UBERON:0001004 | denotes | respiratory |
| T152 | 360-366 | NCBITaxon:9606 | denotes | people |
| T153 | 597-608 | NCBITaxon:11118 | denotes | coronavirus |
| T154 | 623-631 | SP_7 | denotes | COVID-19 |
| T155 | 765-773 | SP_7 | denotes | COVID-19 |
| T156 | 881-887 | NCBITaxon:9606 | denotes | people |
| T157 | 906-912 | GO:0016265 | denotes | deaths |
| T158 | 925-936 | NCBITaxon:11118 | denotes | coronavirus |
| T159 | 959-970 | NCBITaxon:11118 | denotes | Coronavirus |
| T160 | 983-988 | SP_6;NCBITaxon:9606 | denotes | human |
| T161 | 1092-1103 | NCBITaxon:11118 | denotes | coronavirus |
| T162 | 1125-1136 | UBERON:0001004 | denotes | respiratory |
| T163 | 1147-1151 | SP_10 | denotes | SARS |
| T164 | 1228-1233 | NCBITaxon:10239 | denotes | virus |
| T165 | 1254-1258 | SP_10 | denotes | SARS |
| T166 | 1277-1281 | SP_10 | denotes | SARS |
| T167 | 1282-1293 | NCBITaxon:11118 | denotes | coronavirus |
| T168 | 1295-1303 | SP_10 | denotes | SARS-CoV |
| T169 | 1311-1319 | SP_10 | denotes | SARS-CoV |
| T170 | 1381-1387 | NCBITaxon:9606 | denotes | people |
| T171 | 1556-1567 | UBERON:0001004 | denotes | respiratory |
| T172 | 1587-1598 | NCBITaxon:11118 | denotes | coronavirus |
| T173 | 1783-1788 | NCBITaxon:10239 | denotes | virus |
| T174 | 1835-1846 | SP_9 | denotes | Middle East |
| T175 | 1847-1858 | SP_9;UBERON:0001004 | denotes | respiratory |
| T176 | 1859-1879 | SP_9 | denotes | syndrome coronavirus |
| T177 | 1881-1889 | SP_9 | denotes | MERS-CoV |
| T178 | 1898-1905 | NCBITaxon:species | denotes | species |
| T179 | 1918-1929 | UBERON:0001004 | denotes | respiratory |
| T180 | 1947-1958 | NCBITaxon:11118 | denotes | coronavirus |
| T181 | 1965-1970 | NCBITaxon:kingdom | denotes | genus |
| T182 | 1971-1986 | SP_8;NCBITaxon:694002 | denotes | Betacoronavirus |
| T183 | 1988-1996 | SP_9 | denotes | MERS-CoV |
| T184 | 2037-2046 | SP_3 | denotes | dromedary |
| T185 | 2057-2062 | SP_6;NCBITaxon:9606 | denotes | human |
| T186 | 2147-2151 | SP_9 | denotes | MERS |
| T98544 | 179-190 | UBERON:0001004 | denotes | respiratory |
| T39179 | 360-366 | NCBITaxon:9606 | denotes | people |
| T47842 | 597-608 | NCBITaxon:11118 | denotes | coronavirus |
| T14455 | 623-631 | SP_7 | denotes | COVID-19 |
| T65787 | 765-773 | SP_7 | denotes | COVID-19 |
| T39032 | 881-887 | NCBITaxon:9606 | denotes | people |
| T2617 | 906-912 | GO:0016265 | denotes | deaths |
| T6943 | 925-936 | NCBITaxon:11118 | denotes | coronavirus |
| T86349 | 959-970 | NCBITaxon:11118 | denotes | Coronavirus |
| T64885 | 983-988 | SP_6;NCBITaxon:9606 | denotes | human |
| T28218 | 1092-1103 | NCBITaxon:11118 | denotes | coronavirus |
| T82303 | 1125-1136 | UBERON:0001004 | denotes | respiratory |
| T13007 | 1147-1151 | SP_10 | denotes | SARS |
| T11602 | 1228-1233 | NCBITaxon:10239 | denotes | virus |
| T64727 | 1254-1258 | SP_10 | denotes | SARS |
| T67730 | 1277-1281 | SP_10 | denotes | SARS |
| T61445 | 1282-1293 | NCBITaxon:11118 | denotes | coronavirus |
| T47169 | 1295-1303 | SP_10 | denotes | SARS-CoV |
| T62060 | 1311-1319 | SP_10 | denotes | SARS-CoV |
| T2529 | 1381-1387 | NCBITaxon:9606 | denotes | people |
| T92784 | 1556-1567 | UBERON:0001004 | denotes | respiratory |
| T14745 | 1587-1598 | NCBITaxon:11118 | denotes | coronavirus |
| T4622 | 1783-1788 | NCBITaxon:10239 | denotes | virus |
| T16391 | 1835-1846 | SP_9 | denotes | Middle East |
| T15182 | 1847-1858 | SP_9;UBERON:0001004 | denotes | respiratory |
| T73922 | 1859-1879 | SP_9 | denotes | syndrome coronavirus |
| T83262 | 1881-1889 | SP_9 | denotes | MERS-CoV |
| T84799 | 1898-1905 | NCBITaxon:species | denotes | species |
| T57968 | 1918-1929 | UBERON:0001004 | denotes | respiratory |
| T25907 | 1947-1958 | NCBITaxon:11118 | denotes | coronavirus |
| T91978 | 1965-1970 | NCBITaxon:kingdom | denotes | genus |
| T85188 | 1971-1986 | SP_8;NCBITaxon:694002 | denotes | Betacoronavirus |
| T67477 | 1988-1996 | SP_9 | denotes | MERS-CoV |
| T53440 | 2037-2046 | SP_3 | denotes | dromedary |
| T53024 | 2057-2062 | SP_6;NCBITaxon:9606 | denotes | human |
| T72644 | 2147-2151 | SP_9 | denotes | MERS |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32656303-31953166-143910211 | 304-305 | 31953166 | denotes | 9 |
| 32656303-32108160-143910212 | 406-408 | 32108160 | denotes | 11 |
| 32656303-19508441-143910213 | 1214-1215 | 19508441 | denotes | 4 |
| 32656303-14585636-143910214 | 1306-1308 | 14585636 | denotes | 18 |
| 32656303-28794876-143910215 | 1636-1637 | 28794876 | denotes | 1 |