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PMC:7317266 / 3234-4447 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T6 37-40 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T7 52-58 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T8 131-134 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T9 197-204 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T10 319-323 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T20 986-1019 Disease denotes Severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T59 15-16 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T60 41-46 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T61 90-91 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T62 138-140 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T63 144-146 http://purl.obolibrary.org/obo/CLO_0007074 denotes kb
T64 144-146 http://purl.obolibrary.org/obo/CLO_0051988 denotes kb
T65 159-167 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T66 177-182 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T67 319-323 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T68 359-370 http://purl.obolibrary.org/obo/NCBITaxon_7742 denotes vertebrates
T69 395-399 http://purl.obolibrary.org/obo/NCBITaxon_117565 denotes fish
T70 517-520 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T71 738-743 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T72 765-770 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T73 789-794 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T74 878-883 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T75 905-910 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T76 1049-1054 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T77 1157-1162 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T3 197-204 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T4 216-237 Chemical denotes antigenic determinant http://purl.obolibrary.org/obo/CHEBI_53000

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
96 191-196 Gene denotes spike Gene:43740568
97 0-11 Species denotes Coronavirus Tax:11118
98 330-343 Species denotes Coronaviruses Tax:11118
99 474-487 Species denotes Coronaviridae Tax:11118
100 552-567 Species denotes Betacoronavirus Tax:694002
101 635-652 Species denotes betacoronaviruses Tax:694002
102 738-755 Species denotes human coronavirus Tax:694448
103 765-787 Species denotes Human coronavirus 229E Tax:11137
104 789-811 Species denotes Human coronavirus NL63 Tax:277944
105 823-838 Species denotes Betacoronavirus Tax:694002
106 878-895 Species denotes human coronavirus Tax:694448
107 905-927 Species denotes Human coronavirus HKU1 Tax:290028
108 929-981 Species denotes Middle East respiratory syndrome-related coronavirus Tax:1335626
109 986-1039 Species denotes Severe acute respiratory syndrome-related coronavirus Tax:694009
110 1049-1054 Species denotes human Tax:9606
111 1055-1068 Species denotes coronaviruses Tax:11118
112 1124-1137 Species denotes coronaviruses Tax:11118
113 1157-1162 Species denotes human Tax:9606

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T25 0-47 Sentence denotes Coronavirus is a spherical enveloped RNA virus.
T26 48-147 Sentence denotes The genome is relatively large containing a copy of positive sense single-stranded RNA of 27–32 kb.
T27 148-329 Sentence denotes The virion membrane contains virus encoded spike protein, the major antigenic determinant that facilitates receptor attachment and fusion leading to the entry to the host cell [16].
T28 330-400 Sentence denotes Coronaviruses infect diverse vertebrates like mammals, birds and fish.
T29 401-488 Sentence denotes They are classified under the subfamily Orthocoronavirinae of the family Coronaviridae.
T30 489-607 Sentence denotes The subfamily Coronavirinae has four genera, Alphacoronavirus, Betacoronavirus, Gammacoronavirus and Deltacoronavirus.
T31 608-668 Sentence denotes The alphacoronaviruses and betacoronaviruses infect mammals.
T32 669-764 Sentence denotes The genus Alphacoronavirus contains 19 species of which only two are human coronavirus species:
T33 765-812 Sentence denotes Human coronavirus 229E, Human coronavirus NL63.
T34 813-904 Sentence denotes The genus Betacoronavirus contains 14 species of which three are human coronavirus species:
T35 905-1040 Sentence denotes Human coronavirus HKU1, Middle East respiratory syndrome-related coronavirus and Severe acute respiratory syndrome-related coronavirus.
T36 1041-1213 Sentence denotes Not all human coronaviruses are severe pathogens, the respiratory syndrome-related coronaviruses are only lethal to human, whereas, the others are generally mild pathogens.

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T104 0-11 NCBITaxon:11118 denotes Coronavirus
T105 37-40 BV_22 denotes RNA
T106 41-46 BV_22;NCBITaxon:10239 denotes virus
T107 52-58 SO:0001026 denotes genome
T108 115-130 SO:0000984 denotes single-stranded
T109 152-158 GO:0005773 denotes virion
T110 159-167 GO:0005886 denotes membrane
T111 177-182 NCBITaxon:10239 denotes virus
T112 216-225 CHEBI:59132;CHEBI:59132 denotes antigenic
T113 330-343 NCBITaxon:11118 denotes Coronaviruses
T114 359-370 NCBITaxon:7742 denotes vertebrates
T115 376-383 NCBITaxon:40674 denotes mammals
T116 385-390 NCBITaxon:8782 denotes birds
T117 441-459 NCBITaxon:9986 denotes Orthocoronavirinae
T118 474-487 NCBITaxon:11118 denotes Coronaviridae
T119 503-516 NCBITaxon:11118 denotes Coronavirinae
T120 534-550 NCBITaxon:7656 denotes Alphacoronavirus
T121 552-567 SP_8;NCBITaxon:99883 denotes Betacoronavirus
T122 569-585 NCBITaxon:86599 denotes Gammacoronavirus
T123 590-606 NCBITaxon:99883 denotes Deltacoronavirus
T124 612-630 NCBITaxon:8296 denotes alphacoronaviruses
T125 660-667 NCBITaxon:40674 denotes mammals
T126 679-695 NCBITaxon:7656 denotes Alphacoronavirus
T127 708-715 NCBITaxon:species denotes species
T128 738-743 SP_6;NCBITaxon:9606 denotes human
T129 744-755 NCBITaxon:11118 denotes coronavirus
T130 756-763 NCBITaxon:species denotes species
T131 765-770 SP_6;NCBITaxon:9606 denotes Human
T132 771-782 NCBITaxon:11118 denotes coronavirus
T133 789-794 SP_6;NCBITaxon:9606 denotes Human
T134 795-806 NCBITaxon:11118 denotes coronavirus
T135 823-838 SP_8;NCBITaxon:694002 denotes Betacoronavirus
T136 851-858 NCBITaxon:species denotes species
T137 878-883 SP_6;NCBITaxon:9606 denotes human
T138 884-895 NCBITaxon:11118 denotes coronavirus
T139 896-903 NCBITaxon:species denotes species
T140 905-910 SP_6;NCBITaxon:9606 denotes Human
T141 911-922 NCBITaxon:11118 denotes coronavirus
T142 941-952 UBERON:0001004 denotes respiratory
T143 970-981 NCBITaxon:11118 denotes coronavirus
T144 999-1010 UBERON:0001004 denotes respiratory
T145 1028-1039 NCBITaxon:11118 denotes coronavirus
T146 1049-1054 SP_6;NCBITaxon:9606 denotes human
T147 1055-1068 NCBITaxon:11118 denotes coronaviruses
T148 1095-1106 UBERON:0001004 denotes respiratory
T149 1124-1137 NCBITaxon:11118 denotes coronaviruses
T150 1157-1162 SP_6;NCBITaxon:9606 denotes human
T4766 0-11 NCBITaxon:11118 denotes Coronavirus
T6662 37-40 BV_22 denotes RNA
T81974 41-46 BV_22;NCBITaxon:10239 denotes virus
T32918 52-58 SO:0001026 denotes genome
T58611 115-130 SO:0000984 denotes single-stranded
T34189 152-158 GO:0005773 denotes virion
T36002 159-167 GO:0005886 denotes membrane
T90631 177-182 NCBITaxon:10239 denotes virus
T94986 216-225 CHEBI:59132;CHEBI:59132 denotes antigenic
T21968 330-343 NCBITaxon:11118 denotes Coronaviruses
T47600 359-370 NCBITaxon:7742 denotes vertebrates
T99527 376-383 NCBITaxon:40674 denotes mammals
T36475 385-390 NCBITaxon:8782 denotes birds
T85180 441-459 NCBITaxon:9986 denotes Orthocoronavirinae
T70504 474-487 NCBITaxon:11118 denotes Coronaviridae
T3866 503-516 NCBITaxon:11118 denotes Coronavirinae
T33688 534-550 NCBITaxon:7656 denotes Alphacoronavirus
T5808 552-567 SP_8;NCBITaxon:99883 denotes Betacoronavirus
T87275 569-585 NCBITaxon:86599 denotes Gammacoronavirus
T5987 590-606 NCBITaxon:99883 denotes Deltacoronavirus
T29213 612-630 NCBITaxon:8296 denotes alphacoronaviruses
T53549 660-667 NCBITaxon:40674 denotes mammals
T90815 679-695 NCBITaxon:7656 denotes Alphacoronavirus
T15975 708-715 NCBITaxon:species denotes species
T25389 738-743 SP_6;NCBITaxon:9606 denotes human
T99328 744-755 NCBITaxon:11118 denotes coronavirus
T58470 756-763 NCBITaxon:species denotes species
T30915 765-770 SP_6;NCBITaxon:9606 denotes Human
T54782 771-782 NCBITaxon:11118 denotes coronavirus
T66212 789-794 SP_6;NCBITaxon:9606 denotes Human
T90384 795-806 NCBITaxon:11118 denotes coronavirus
T56807 823-838 SP_8;NCBITaxon:694002 denotes Betacoronavirus
T86427 851-858 NCBITaxon:species denotes species
T50200 878-883 SP_6;NCBITaxon:9606 denotes human
T78807 884-895 NCBITaxon:11118 denotes coronavirus
T91036 896-903 NCBITaxon:species denotes species
T77505 905-910 SP_6;NCBITaxon:9606 denotes Human
T2219 911-922 NCBITaxon:11118 denotes coronavirus
T58341 941-952 UBERON:0001004 denotes respiratory
T80168 970-981 NCBITaxon:11118 denotes coronavirus
T25495 999-1010 UBERON:0001004 denotes respiratory
T24386 1028-1039 NCBITaxon:11118 denotes coronavirus
T25899 1049-1054 SP_6;NCBITaxon:9606 denotes human
T94266 1055-1068 NCBITaxon:11118 denotes coronaviruses
T81309 1095-1106 UBERON:0001004 denotes respiratory
T69190 1124-1137 NCBITaxon:11118 denotes coronaviruses
T636 1157-1162 SP_6;NCBITaxon:9606 denotes human

2_test

Id Subject Object Predicate Lexical cue
32656303-32963948-143910210 325-327 32963948 denotes 16