PMC:7314083 / 175-1118
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T2 | 275-284 | Body_part | denotes | left lung | http://purl.org/sig/ont/fma/fma7310 |
| T3 | 654-666 | Body_part | denotes | aortic valve | http://purl.org/sig/ont/fma/fma7236 |
| T4 | 726-738 | Body_part | denotes | aortic valve | http://purl.org/sig/ont/fma/fma7236 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T5 | 275-284 | Body_part | denotes | left lung | http://purl.obolibrary.org/obo/UBERON_0002168 |
| T6 | 280-284 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
| T7 | 654-666 | Body_part | denotes | aortic valve | http://purl.obolibrary.org/obo/UBERON_0002137 |
| T8 | 661-666 | Body_part | denotes | valve | http://purl.obolibrary.org/obo/UBERON_0003978 |
| T9 | 726-738 | Body_part | denotes | aortic valve | http://purl.obolibrary.org/obo/UBERON_0002137 |
| T10 | 733-738 | Body_part | denotes | valve | http://purl.obolibrary.org/obo/UBERON_0003978 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T4 | 138-158 | Disease | denotes | aortic insufficiency | http://purl.obolibrary.org/obo/MONDO_0005648 |
| T5 | 310-318 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T6 | 319-328 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T7 | 462-471 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T8 | 22-23 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T9 | 32-33 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T10 | 46-50 | http://purl.obolibrary.org/obo/UBERON_0003101 | denotes | male |
| T11 | 46-50 | http://www.ebi.ac.uk/efo/EFO_0000970 | denotes | male |
| T12 | 138-144 | http://www.ebi.ac.uk/efo/EFO_0000265 | denotes | aortic |
| T13 | 196-197 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T14 | 275-284 | http://purl.obolibrary.org/obo/UBERON_0002168 | denotes | left lung |
| T15 | 308-309 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T16 | 417-424 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | testing |
| T17 | 446-447 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T18 | 492-496 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test |
| T19 | 553-560 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | testing |
| T20 | 654-660 | http://www.ebi.ac.uk/efo/EFO_0000265 | denotes | aortic |
| T21 | 661-666 | http://www.ebi.ac.uk/efo/EFO_0000825 | denotes | valve |
| T22 | 726-732 | http://www.ebi.ac.uk/efo/EFO_0000265 | denotes | aortic |
| T23 | 733-738 | http://www.ebi.ac.uk/efo/EFO_0000825 | denotes | valve |
| T24 | 901-902 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T1 | 46-50 | Chemical | denotes | male | http://purl.obolibrary.org/obo/CHEBI_30780 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 16 | 51-58 | Species | denotes | patient | Tax:9606 |
| 17 | 178-185 | Species | denotes | patient | Tax:9606 |
| 18 | 575-582 | Species | denotes | patient | Tax:9606 |
| 19 | 138-158 | Disease | denotes | aortic insufficiency | MESH:D001022 |
| 20 | 310-318 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 21 | 319-328 | Disease | denotes | infection | MESH:D007239 |
| 22 | 462-471 | Disease | denotes | infection | MESH:D007239 |
| 23 | 919-942 | Disease | denotes | pulmonary complications | MESH:D008171 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 360-381 | http://purl.obolibrary.org/obo/GO_0001171 | denotes | reverse transcription |
| T2 | 368-381 | http://purl.obolibrary.org/obo/GO_0006351 | denotes | transcription |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T3 | 0-8 | Sentence | denotes | Abstract |
| T4 | 9-159 | Sentence | denotes | We report on a case of a 57-year-old male patient, who underwent full root replacement in 2005 and now presented with high grade aortic insufficiency. |
| T5 | 160-425 | Sentence | denotes | On admission, the patient underwent a computed tomography scan which demonstrated interstitial infiltration in the left lung, highly suspicious for a COVID-19 infection that could not be confirmed by reverse transcription polymerase chain reaction (RT-PCR) testing. |
| T6 | 426-561 | Sentence | denotes | As there usually is a delay between infection and positive RT-PCR test results, the initial decision was to perform additional testing. |
| T7 | 562-689 | Sentence | denotes | However, the patient deteriorated quickly in spite of optimal medical therapy making urgent aortic valve replacement necessary. |
| T8 | 690-943 | Sentence | denotes | We decided to perform transcatheter aortic valve replacement to avoid cardiopulmonary bypass with shorter operative times, presumably shorter ventilation times and duration of intensive care unit stay, and thus a lesser risk for pulmonary complications. |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T1 | 138-158 | Phenotype | denotes | aortic insufficiency | http://purl.obolibrary.org/obo/HP_0001659 |