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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 10891-10894 Body_part denotes map http://purl.org/sig/ont/fma/fma67847
T2 12579-12591 Body_part denotes aortic valve http://purl.org/sig/ont/fma/fma7236
T3 13361-13373 Body_part denotes Aortic valve http://purl.org/sig/ont/fma/fma7236
T4 13537-13549 Body_part denotes Mitral valve http://purl.org/sig/ont/fma/fma7235
T5 13661-13677 Body_part denotes papillary muscle http://purl.org/sig/ont/fma/fma12154
T6 13809-13812 Body_part denotes LAD http://purl.org/sig/ont/fma/fma3862
T7 14136-14141 Body_part denotes Heart http://purl.org/sig/ont/fma/fma7088
T8 14178-14183 Body_part denotes Heart http://purl.org/sig/ont/fma/fma7088
T9 14432-14435 Body_part denotes LAD http://purl.org/sig/ont/fma/fma3862
T10 14479-14494 Body_part denotes coronary artery http://purl.org/sig/ont/fma/fma49893
T11 14549-14554 Body_part denotes Heart http://purl.org/sig/ont/fma/fma7088

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 12579-12591 Body_part denotes aortic valve http://purl.obolibrary.org/obo/UBERON_0002137
T2 12586-12591 Body_part denotes valve http://purl.obolibrary.org/obo/UBERON_0003978
T3 13361-13373 Body_part denotes Aortic valve http://purl.obolibrary.org/obo/UBERON_0002137
T4 13368-13373 Body_part denotes valve http://purl.obolibrary.org/obo/UBERON_0003978
T5 13537-13549 Body_part denotes Mitral valve http://purl.obolibrary.org/obo/UBERON_0002135
T6 13544-13549 Body_part denotes valve http://purl.obolibrary.org/obo/UBERON_0003978
T7 14077-14082 Body_part denotes valve http://purl.obolibrary.org/obo/UBERON_0003978
T8 14136-14141 Body_part denotes Heart http://purl.obolibrary.org/obo/UBERON_0000948
T9 14178-14183 Body_part denotes Heart http://purl.obolibrary.org/obo/UBERON_0000948
T10 14356-14361 Body_part denotes valve http://purl.obolibrary.org/obo/UBERON_0003978
T11 14479-14494 Body_part denotes coronary artery http://purl.obolibrary.org/obo/UBERON_0001621
T12 14488-14494 Body_part denotes artery http://purl.obolibrary.org/obo/UBERON_0001637
T13 14549-14554 Body_part denotes Heart http://purl.obolibrary.org/obo/UBERON_0000948
T14 16532-16537 Body_part denotes scale http://purl.obolibrary.org/obo/UBERON_0002542

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 574-584 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T2 605-614 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T3 658-682 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T4 684-694 Disease denotes COVID-2019 http://purl.obolibrary.org/obo/MONDO_0100096
T5 767-800 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T6 802-806 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T7 1186-1194 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T8 1260-1268 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T9 1433-1441 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T10 2087-2095 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T11 2172-2180 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T12 2274-2296 Disease denotes cardiovascular disease http://purl.obolibrary.org/obo/MONDO_0004995
T13 2427-2435 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T14 2660-2668 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T15 2800-2808 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T16 2800-2804 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T17 2955-2966 Disease denotes common cold http://purl.obolibrary.org/obo/MONDO_0005709
T18 3077-3081 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T19 3111-3120 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T20 3144-3152 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T21 3144-3148 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T22 3230-3238 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T23 3240-3248 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T24 3324-3332 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T25 3324-3328 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T26 3564-3573 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T27 3640-3648 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T28 3706-3714 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T29 3911-3919 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T30 3911-3915 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T31 4132-4141 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T32 4260-4268 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T33 4617-4625 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T34 4926-4934 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T35 4926-4930 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T36 5553-5561 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T37 5553-5557 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T38 6882-6886 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T39 6888-6921 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T40 6975-6983 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T41 7134-7143 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T42 7346-7354 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T43 7346-7350 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T44 7563-7571 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T45 7563-7567 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T46 7653-7662 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T47 7691-7700 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T48 7858-7867 Disease denotes diarrhoea http://purl.obolibrary.org/obo/MONDO_0001673
T49 7941-7949 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T50 7941-7945 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T51 8032-8041 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T52 8077-8084 Disease denotes obesity http://purl.obolibrary.org/obo/MONDO_0011122
T53 8086-8098 Disease denotes hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T54 8103-8120 Disease denotes diabetes mellitus http://purl.obolibrary.org/obo/MONDO_0005015
T55 8223-8231 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T56 8223-8227 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T57 8293-8302 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T58 8510-8518 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T59 9655-9663 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T60 9880-9886 Disease denotes trauma http://purl.obolibrary.org/obo/MONDO_0021178
T61 9888-9894 Disease denotes stroke http://purl.obolibrary.org/obo/MONDO_0005098|http://purl.obolibrary.org/obo/MONDO_0011057
T63 10007-10034 Disease denotes acute myocardial infarction http://purl.obolibrary.org/obo/MONDO_0004781
T64 10013-10034 Disease denotes myocardial infarction http://purl.obolibrary.org/obo/MONDO_0005068
T65 10851-10875 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T66 10997-11021 Disease denotes coronavirus disease-2019 http://purl.obolibrary.org/obo/MONDO_0100096
T67 11752-11760 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T68 11752-11756 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T69 12246-12254 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T70 12246-12250 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T71 12768-12783 Disease denotes aortic stenosis http://purl.obolibrary.org/obo/MONDO_0004978|http://purl.obolibrary.org/obo/MONDO_0042981
T73 13009-13017 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T74 13147-13153 Disease denotes stroke http://purl.obolibrary.org/obo/MONDO_0005098|http://purl.obolibrary.org/obo/MONDO_0011057
T76 13202-13217 Disease denotes aortic aneurysm http://purl.obolibrary.org/obo/MONDO_0005160
T77 13234-13249 Disease denotes aortic aneurysm http://purl.obolibrary.org/obo/MONDO_0005160
T78 13263-13278 Disease denotes Marfan syndrome http://purl.obolibrary.org/obo/MONDO_0007947
T79 13285-13299 Disease denotes collagenopathy http://purl.obolibrary.org/obo/MONDO_0004603
T80 13348-13360 Disease denotes hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T81 13382-13397 Disease denotes aortic stenosis http://purl.obolibrary.org/obo/MONDO_0004978|http://purl.obolibrary.org/obo/MONDO_0042981
T83 13469-13489 Disease denotes aortic regurgitation http://purl.obolibrary.org/obo/MONDO_0005648
T84 13558-13573 Disease denotes mitral stenosis http://purl.obolibrary.org/obo/MONDO_0005852
T85 13633-13653 Disease denotes mitral insufficiency http://purl.obolibrary.org/obo/MONDO_0001298
T86 13745-13760 Disease denotes Unstable angina http://purl.obolibrary.org/obo/MONDO_0006805
T87 13809-13812 Disease denotes LAD http://purl.obolibrary.org/obo/MONDO_0017570
T88 13877-13892 Disease denotes cardiac rupture http://purl.obolibrary.org/obo/MONDO_0020983
T89 13899-13911 Disease denotes endocarditis http://purl.obolibrary.org/obo/MONDO_0005025
T90 14136-14149 Disease denotes Heart failure http://purl.obolibrary.org/obo/MONDO_0005252
T91 14178-14191 Disease denotes Heart failure http://purl.obolibrary.org/obo/MONDO_0005252
T92 14250-14267 Disease denotes Cardiac tamponade http://purl.obolibrary.org/obo/MONDO_0001297
T93 14275-14281 Disease denotes myxoma http://purl.obolibrary.org/obo/MONDO_0044784
T94 14396-14404 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T95 14406-14430 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T96 14432-14435 Disease denotes LAD http://purl.obolibrary.org/obo/MONDO_0017570
T97 15192-15200 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T98 15192-15196 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T99 15234-15242 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T100 15234-15238 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T101 15351-15359 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T102 15395-15403 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T103 15611-15619 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T104 15611-15615 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T105 16022-16030 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T106 16022-16026 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T107 16228-16237 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T108 16507-16515 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T109 17034-17042 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T110 17610-17618 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 34-35 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T2 235-236 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T3 1026-1032 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T4 1050-1055 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T5 1099-1107 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T6 1313-1314 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T7 1451-1454 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T8 1769-1772 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T9 1838-1839 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T10 1922-1927 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T11 2156-2157 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T12 2387-2388 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T13 2869-2876 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animals
T14 2881-2887 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T15 2895-2902 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T16 3153-3157 http://purl.obolibrary.org/obo/CLO_0001236 denotes 2, a
T17 3207-3213 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T18 3215-3218 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T19 3268-3273 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T20 3338-3339 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T21 3344-3349 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T22 3527-3539 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T23 3619-3620 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T24 3715-3716 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T25 3795-3796 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T26 3809-3811 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T27 3947-3948 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T28 4013-4014 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T29 4089-4090 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T30 4213-4216 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T31 4792-4802 http://purl.obolibrary.org/obo/CLO_0001658 denotes activities
T32 5001-5006 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T33 5013-5014 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T34 5187-5194 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T35 5694-5696 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T36 5708-5710 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T37 5746-5749 http://purl.obolibrary.org/obo/CLO_0053001 denotes 114
T38 5836-5839 http://purl.obolibrary.org/obo/CLO_0001311 denotes 356
T39 5926-5928 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T40 5948-5951 http://purl.obolibrary.org/obo/CLO_0001230 denotes 293
T41 5948-5951 http://purl.obolibrary.org/obo/CLO_0037237 denotes 293
T42 5948-5951 http://purl.obolibrary.org/obo/CLO_0050903 denotes 293
T43 5948-5951 http://purl.obolibrary.org/obo/CLO_0054249 denotes 293
T44 5948-5951 http://purl.obolibrary.org/obo/CLO_0054250 denotes 293
T45 5948-5951 http://purl.obolibrary.org/obo/CLO_0054251 denotes 293
T46 5948-5951 http://purl.obolibrary.org/obo/CLO_0054252 denotes 293
T47 6033-6035 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T48 6130-6133 http://purl.obolibrary.org/obo/CLO_0001002 denotes 162
T49 6141-6143 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T50 6174-6178 http://purl.obolibrary.org/obo/CLO_0001139 denotes 1871
T51 6431-6435 http://purl.obolibrary.org/obo/CLO_0054053 denotes 1191
T52 6501-6503 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T53 6584-6586 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T54 6612-6615 http://purl.obolibrary.org/obo/CLO_0054061 denotes 132
T55 6635-6637 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36
T56 6676-6679 http://purl.obolibrary.org/obo/CLO_0001415 denotes 552
T57 6694-6698 http://purl.obolibrary.org/obo/CLO_0001106 denotes 1582
T58 6719-6722 http://purl.obolibrary.org/obo/CLO_0001002 denotes 162
T59 6769-6771 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T60 6807-6809 http://purl.obolibrary.org/obo/CLO_0053799 denotes 45
T61 6848-6851 http://purl.obolibrary.org/obo/CLO_0001404 denotes 506
T62 7397-7404 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T63 7618-7619 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T64 7888-7891 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T65 8205-8206 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T66 8623-8624 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T67 8725-8726 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T68 8785-8786 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T69 9001-9002 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T70 9020-9032 http://purl.obolibrary.org/obo/OBI_0000245 denotes organization
T71 9066-9069 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T72 9554-9560 http://purl.obolibrary.org/obo/CLO_0001658 denotes active
T73 9573-9581 http://purl.obolibrary.org/obo/CLO_0001658 denotes Activate
T74 9582-9583 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T75 9831-9832 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T76 10100-10108 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T77 10153-10154 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T78 10266-10267 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T79 10726-10727 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T80 11053-11054 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T81 11291-11292 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T82 11345-11355 http://purl.obolibrary.org/obo/OBI_0000245 denotes organizers
T83 11399-11400 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T84 11728-11734 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T85 11900-11906 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T86 12097-12099 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T87 12148-12150 http://purl.obolibrary.org/obo/CLO_0053799 denotes 45
T88 12153-12154 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T89 12579-12585 http://www.ebi.ac.uk/efo/EFO_0000265 denotes aortic
T90 12586-12591 http://www.ebi.ac.uk/efo/EFO_0000825 denotes valve
T91 12627-12633 http://www.ebi.ac.uk/efo/EFO_0000265 denotes aortic
T92 12768-12774 http://www.ebi.ac.uk/efo/EFO_0000265 denotes aortic
T93 13033-13039 http://www.ebi.ac.uk/efo/EFO_0000265 denotes aortic
T94 13056-13062 http://www.ebi.ac.uk/efo/EFO_0000265 denotes aortic
T95 13202-13208 http://www.ebi.ac.uk/efo/EFO_0000265 denotes aortic
T96 13234-13240 http://www.ebi.ac.uk/efo/EFO_0000265 denotes aortic
T97 13361-13367 http://www.ebi.ac.uk/efo/EFO_0000265 denotes Aortic
T98 13368-13373 http://www.ebi.ac.uk/efo/EFO_0000825 denotes valve
T99 13382-13388 http://www.ebi.ac.uk/efo/EFO_0000265 denotes aortic
T100 13469-13475 http://www.ebi.ac.uk/efo/EFO_0000265 denotes aortic
T101 13544-13549 http://www.ebi.ac.uk/efo/EFO_0000825 denotes valve
T102 13671-13677 http://purl.obolibrary.org/obo/UBERON_0001630 denotes muscle
T103 13671-13677 http://purl.obolibrary.org/obo/UBERON_0005090 denotes muscle
T104 13671-13677 http://www.ebi.ac.uk/efo/EFO_0000801 denotes muscle
T105 13671-13677 http://www.ebi.ac.uk/efo/EFO_0001949 denotes muscle
T106 14077-14082 http://www.ebi.ac.uk/efo/EFO_0000825 denotes valve
T107 14136-14141 http://purl.obolibrary.org/obo/UBERON_0000948 denotes Heart
T108 14136-14141 http://purl.obolibrary.org/obo/UBERON_0007100 denotes Heart
T109 14136-14141 http://purl.obolibrary.org/obo/UBERON_0015228 denotes Heart
T110 14136-14141 http://www.ebi.ac.uk/efo/EFO_0000815 denotes Heart
T111 14178-14183 http://purl.obolibrary.org/obo/UBERON_0000948 denotes Heart
T112 14178-14183 http://purl.obolibrary.org/obo/UBERON_0007100 denotes Heart
T113 14178-14183 http://purl.obolibrary.org/obo/UBERON_0015228 denotes Heart
T114 14178-14183 http://www.ebi.ac.uk/efo/EFO_0000815 denotes Heart
T115 14356-14361 http://www.ebi.ac.uk/efo/EFO_0000825 denotes valve
T116 14488-14494 http://purl.obolibrary.org/obo/UBERON_0001637 denotes artery
T117 14488-14494 http://www.ebi.ac.uk/efo/EFO_0000814 denotes artery
T118 14526-14532 http://purl.obolibrary.org/obo/OBI_0000968 denotes device
T119 14549-14554 http://purl.obolibrary.org/obo/UBERON_0000948 denotes Heart
T120 14549-14554 http://purl.obolibrary.org/obo/UBERON_0007100 denotes Heart
T121 14549-14554 http://purl.obolibrary.org/obo/UBERON_0015228 denotes Heart
T122 14549-14554 http://www.ebi.ac.uk/efo/EFO_0000815 denotes Heart
T123 14903-14904 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T124 15121-15122 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T125 15340-15341 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T126 15817-15827 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing is
T127 15967-15974 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T128 16057-16058 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T129 16106-16107 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T130 16162-16163 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T131 16530-16531 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T132 16568-16569 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T133 16603-16604 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T134 16939-16945 http://purl.obolibrary.org/obo/UBERON_0001456 denotes facing
T135 16992-16993 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T136 17004-17016 http://purl.obolibrary.org/obo/OBI_0000245 denotes organization
T137 17059-17068 http://www.ebi.ac.uk/efo/EFO_0000876 denotes extremely
T138 17161-17166 http://purl.obolibrary.org/obo/UBERON_0007688 denotes field
T139 17462-17468 http://purl.obolibrary.org/obo/UBERON_0001456 denotes facing

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 2108-2116 Chemical denotes medicine http://purl.obolibrary.org/obo/CHEBI_23888
T2 3250-3252 Chemical denotes CO http://purl.obolibrary.org/obo/CHEBI_17245
T3 3255-3261 Chemical denotes corona http://purl.obolibrary.org/obo/CHEBI_37409
T4 3263-3265 Chemical denotes VI http://purl.obolibrary.org/obo/CHEBI_75012
T5 8251-8265 Chemical denotes antiviral drug http://purl.obolibrary.org/obo/CHEBI_36044
T6 8251-8260 Chemical denotes antiviral http://purl.obolibrary.org/obo/CHEBI_22587
T7 8261-8265 Chemical denotes drug http://purl.obolibrary.org/obo/CHEBI_23888
T8 9174-9176 Chemical denotes LA http://purl.obolibrary.org/obo/CHEBI_17351|http://purl.obolibrary.org/obo/CHEBI_73527
T10 13458-13460 Chemical denotes IV http://purl.obolibrary.org/obo/CHEBI_74327
T11 13809-13812 Chemical denotes LAD http://purl.obolibrary.org/obo/CHEBI_73524
T12 14353-14355 Chemical denotes AV http://purl.obolibrary.org/obo/CHEBI_73809
T13 14374-14376 Chemical denotes AV http://purl.obolibrary.org/obo/CHEBI_73809
T14 14432-14435 Chemical denotes LAD http://purl.obolibrary.org/obo/CHEBI_73524
T15 16444-16453 Chemical denotes antiviral http://purl.obolibrary.org/obo/CHEBI_22587

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1 85-101 Species denotes coronavirus-2019 Tax:2697049
5 137-154 Species denotes novel coronavirus Tax:2697049
6 349-355 Species denotes people Tax:9606
7 574-593 Disease denotes infectious diseases MESH:D003141
18 744-752 Species denotes patients Tax:9606
19 767-811 Species denotes severe acute respiratory syndrome (SARS)-CoV Tax:694009
20 1013-1021 Species denotes patients Tax:9606
21 1109-1119 Species denotes outpatient Tax:9606
22 658-682 Disease denotes coronavirus disease 2019 MESH:C000657245
23 684-694 Disease denotes COVID-2019 MESH:C000657245
24 753-761 Disease denotes infected MESH:D007239
25 1186-1194 Disease denotes COVID-19 MESH:C000657245
26 1260-1268 Disease denotes COVID-19 MESH:C000657245
27 1341-1362 Disease denotes COVID emergency rooms MESH:C000657245
30 1488-1496 Species denotes patients Tax:9606
31 1433-1441 Disease denotes COVID-19 MESH:C000657245
42 1922-1927 Species denotes human Tax:9606
43 2066-2074 Species denotes patients Tax:9606
44 2181-2189 Species denotes patients Tax:9606
45 2260-2268 Species denotes patients Tax:9606
46 2307-2315 Species denotes patients Tax:9606
47 2087-2095 Disease denotes COVID-19 MESH:C000657245
48 2172-2180 Disease denotes COVID-19 MESH:C000657245
49 2235-2243 Disease denotes infected MESH:D007239
50 2274-2296 Disease denotes cardiovascular disease MESH:D002318
51 2427-2435 Disease denotes COVID-19 MESH:C000657245
53 2660-2668 Disease denotes COVID-19 MESH:C000657245
58 2825-2838 Species denotes coronaviruses Tax:11118
59 2881-2887 Species denotes humans Tax:9606
60 2962-2966 Disease denotes cold MESH:D000067390
61 3111-3120 Disease denotes pneumonia MESH:D011014
67 3144-3154 Species denotes SARS-CoV-2 Tax:2697049
68 3172-3183 Species denotes coronavirus Tax:11118
69 3207-3213 Species denotes humans Tax:9606
70 3230-3238 Disease denotes COVID-19 MESH:C000657245
71 3240-3248 Disease denotes COVID-19 MESH:C000657245
76 3324-3334 Species denotes SARS-CoV-2 Tax:2697049
77 3564-3573 Disease denotes pneumonia MESH:D011014
78 3640-3648 Disease denotes COVID-19 MESH:C000657245
79 3706-3714 Disease denotes COVID-19 MESH:C000657245
84 3911-3921 Species denotes SARS-CoV-2 Tax:2697049
85 3931-3938 Species denotes patient Tax:9606
86 4061-4068 Species denotes patient Tax:9606
87 4132-4141 Disease denotes pneumonia MESH:D011014
91 4281-4292 Species denotes coronavirus Tax:11118
92 4260-4268 Disease denotes COVID-19 MESH:C000657245
93 4617-4625 Disease denotes COVID-19 MESH:C000657245
98 4926-4936 Species denotes SARS-CoV-2 Tax:2697049
99 4978-4986 Species denotes patients Tax:9606
100 5032-5038 Species denotes people Tax:9606
101 5243-5251 Species denotes patients Tax:9606
104 5553-5563 Species denotes SARS-CoV-2 Tax:2697049
105 5593-5599 Disease denotes Deaths MESH:D003643
107 5454-5486 Disease denotes dettaglioNotizieNuovoCoronavirus
109 6888-6921 Disease denotes severe acute respiratory syndrome MESH:D045169
114 7346-7356 Species denotes SARS-CoV-2 Tax:2697049
115 6955-6964 Disease denotes mortality MESH:D003643
116 6975-6983 Disease denotes COVID-19 MESH:C000657245
117 7032-7041 Disease denotes mortality MESH:D003643
119 7417-7425 Disease denotes SYMPTOMS MESH:D051271
128 7563-7573 Species denotes SARS-CoV-2 Tax:2697049
129 7606-7612 Species denotes people Tax:9606
130 7691-7700 Disease denotes pneumonia MESH:D011014
131 7748-7753 Disease denotes death MESH:D003643
132 7755-7763 Disease denotes Dyspnoea MESH:D004417
133 7765-7770 Disease denotes cough MESH:D003371
134 7798-7803 Disease denotes fever MESH:D005334
135 7858-7867 Disease denotes diarrhoea MESH:D003967
142 7919-7926 Species denotes persons Tax:9606
143 7941-7951 Species denotes SARS-CoV-2 Tax:2697049
144 7927-7935 Disease denotes infected MESH:D007239
145 8077-8084 Disease denotes obesity MESH:D009765
146 8086-8098 Disease denotes hypertension MESH:D006973
147 8103-8120 Disease denotes diabetes mellitus MESH:D003920
152 8223-8233 Species denotes SARS-CoV-2 Tax:2697049
153 8373-8381 Species denotes patients Tax:9606
154 8411-8419 Species denotes patients Tax:9606
155 8293-8302 Disease denotes infection MESH:D007239
157 8510-8518 Disease denotes COVID-19 MESH:C000657245
160 8904-8912 Species denotes Patients Tax:9606
161 9107-9122 Disease denotes Willis-Knighton MESH:D011218
163 9452-9459 Species denotes patient Tax:9606
167 9628-9636 Species denotes patients Tax:9606
168 9605-9610 Disease denotes COVID MESH:C000657245
169 9655-9663 Disease denotes COVID-19 MESH:C000657245
171 9774-9781 Species denotes patient Tax:9606
175 9880-9886 Disease denotes trauma MESH:D014947
176 9888-9894 Disease denotes stroke MESH:D020521
177 10013-10034 Disease denotes myocardial infarction MESH:D009203
179 10346-10354 Species denotes patients Tax:9606
181 10728-10771 Disease denotes COVID-free postoperative cardiovascular ICU MESH:D008569
185 11169-11177 Species denotes patients Tax:9606
186 10851-10875 Disease denotes coronavirus disease 2019 MESH:C000657245
187 10997-11021 Disease denotes coronavirus disease-2019 MESH:C000657245
192 11635-11643 Species denotes patients Tax:9606
193 11701-11709 Species denotes patients Tax:9606
194 11752-11762 Species denotes SARS-CoV-2 Tax:2697049
195 11873-11881 Species denotes patients Tax:9606
197 12246-12256 Species denotes SARS-CoV-2 Tax:2697049
203 12747-12755 Species denotes patients Tax:9606
204 12619-12647 Disease denotes balloon aortic valvuloplasty MESH:D054549
205 12741-12746 Disease denotes COVID MESH:C000657245
206 12768-12783 Disease denotes aortic stenosis MESH:D001024
207 12791-12812 Disease denotes ischaemic cardiopathy MESH:D007511
233 13106-13114 Species denotes patients Tax:9606
234 13027-13048 Disease denotes Acute aortic syndrome MESH:D000208
235 13085-13094 Disease denotes haematoma
236 13120-13124 Disease denotes coma MESH:D003128
237 13147-13153 Disease denotes stroke MESH:D020521
238 13202-13217 Disease denotes aortic aneurysm MESH:D001014
239 13234-13249 Disease denotes aortic aneurysm MESH:D001014
240 13285-13311 Disease denotes collagenopathy OR Aneurysm MESH:C535964
241 13348-13397 Disease denotes hypertension Aortic valve Severe aortic stenosis MESH:D001024
242 13417-13457 Disease denotes lipotimia OR angina OR dyspnoea NYHA III MESH:D000787
243 13469-13489 Disease denotes aortic regurgitation MESH:D001022
244 13495-13573 Disease denotes Pulmonary oedema Haemodynamic instability Mitral valve Severe mitral stenosis MESH:D008946
245 13579-13595 Disease denotes Pulmonary oedema MESH:D011654
246 13633-13653 Disease denotes mitral insufficiency MESH:D008944
247 13678-13693 Disease denotes chordal rupture MESH:D012421
248 13705-13781 Disease denotes pulmonary oedema Ischaemic cardiopathy Unstable angina Severe LMCA stenosis MESH:D011654
249 13787-13821 Disease denotes Subocclusive proximal LAD stenosis MESH:C535887
250 13839-13876 Disease denotes PCI Postinfarction ventricular septal MESH:D006345
251 13877-13911 Disease denotes cardiac rupture Acute endocarditis MESH:D006341
252 14077-14094 Disease denotes valve dysfunction MESH:D006349
253 14136-14191 Disease denotes Heart failure OR Haemodynamic instability Heart failure MESH:D006333
254 14217-14281 Disease denotes LVAD implantation Miscellaneous Cardiac tamponade Atrial myxoma MESH:D006331
255 14291-14306 Disease denotes cardiac tumours MESH:D006338
256 14313-14325 Disease denotes High embolic MESH:D004617
257 14353-14373 Disease denotes AV valve obstruction MESH:D054537
259 13009-13017 Disease denotes COVID-19 MESH:C000657245
262 14378-14394 Disease denotes atrioventricular MESH:D054537
263 14406-14430 Disease denotes coronavirus disease 2019 MESH:C000657245
265 14800-14805 Disease denotes COVID MESH:C000657245
267 15192-15202 Species denotes SARS-CoV-2 Tax:2697049
279 15217-15225 Species denotes Patients Tax:9606
280 15234-15244 Species denotes SARS-CoV-2 Tax:2697049
281 15611-15621 Species denotes SARS-CoV-2 Tax:2697049
282 15631-15639 Species denotes patients Tax:9606
283 16005-16012 Species denotes patient Tax:9606
284 16022-16032 Species denotes SARS-CoV-2 Tax:2697049
285 15351-15359 Disease denotes COVID-19 MESH:C000657245
286 15395-15403 Disease denotes COVID-19 MESH:C000657245
287 15520-15529 Disease denotes COVID-ICU MESH:C000657245
288 15739-15744 Disease denotes COVID MESH:C000657245
289 16118-16123 Disease denotes COVID MESH:C000657245
294 16140-16148 Species denotes Patients Tax:9606
295 16331-16348 Species denotes novel coronavirus Tax:2697049
296 16228-16237 Disease denotes infection MESH:D007239
297 16299-16304 Disease denotes COVID MESH:C000657245
301 16507-16515 Disease denotes COVID-19 MESH:C000657245
302 16754-16763 Disease denotes mortality MESH:D003643
303 17034-17042 Disease denotes COVID-19 MESH:C000657245

TEST0

Id Subject Object Predicate Lexical cue
32437514-152-157-8062 277-278 ["32309796"] denotes 1
32437514-190-195-8063 3312-3313 ["32309796"] denotes 1
32437514-112-117-8064 7538-7539 ["32150748"] denotes 5
32437514-122-127-8065 7664-7665 ["32075786"] denotes 6
32437514-189-194-8066 8182-8183 ["31986264"] denotes 7
32437514-238-243-8067 8900-8901 ["28722550"] denotes 9
32437514-115-121-8068 15015-15017 ["28886619"] denotes 10

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 7273-7279 http://purl.obolibrary.org/obo/GO_0007568 denotes ageing
T2 9782-9791 http://purl.obolibrary.org/obo/GO_0006810 denotes transport
T3 12269-12290 http://purl.obolibrary.org/obo/GO_0001171 denotes reverse transcription
T4 12277-12290 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T5 15908-15929 http://purl.obolibrary.org/obo/GO_0001171 denotes reverse transcription
T6 15916-15929 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T7 16896-16905 http://purl.obolibrary.org/obo/GO_0016032 denotes virulence
T8 16896-16905 http://purl.obolibrary.org/obo/GO_0009405 denotes virulence

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-110 Sentence denotes First reorganization in Europe of a regional cardiac surgery system to deal with the coronavirus-2019 pandemic
T2 112-124 Sentence denotes INTRODUCTION
T3 125-280 Sentence denotes The current novel coronavirus outbreak, which began in December 2019 in the Wuhan region in China, represents a massive challenge for the entire world [1].
T4 281-420 Sentence denotes In this era of globalization, illnesses, as well as information and people, travel much more quickly today than they did even 10 years ago.
T5 421-624 Sentence denotes Worldwide health systems are currently under great pressure, trying to tackle the emergency based on previous decennial experience in dealing with other infectious diseases such as an influenza epidemic.
T6 625-904 Sentence denotes By the end of February 2020, the coronavirus disease 2019 (COVID-2019) had spread in Northern Italy, with thousands of patients infected with severe acute respiratory syndrome (SARS)-CoV-2, thus requiring the Italian government to quickly introduce emergency quarantine measures.
T7 905-1056 Sentence denotes Lombardy, an important productive region in Northern Italy, was one of the most affected, with thousands of patients who tested positive for the virus.
T8 1057-1146 Sentence denotes Consequently, almost all elective medical activity (outpatient and surgical) was stopped.
T9 1147-1201 Sentence denotes Entire hospitals were transformed into COVID-19 units.
T10 1202-1249 Sentence denotes In-hospital dedicated pathways were identified.
T11 1250-1385 Sentence denotes Whole new COVID-19 intensive care units (ICUs) were created in a few days, as have new non-COVID emergency rooms to treat urgent cases.
T12 1386-1523 Sentence denotes The emergency situation in Italy caused by the COVID-19 pandemic has also changed the way of treating patients requiring cardiac surgery.
T13 1524-1753 Sentence denotes The Lombardy regional government recently introduced new rules on how to reorganize hospitals by creating 4 hubs for adult and 1 for paediatric cardiac surgery, which will handle all emergency/urgent cases (∼150–200 cases/month).
T14 1754-1911 Sentence denotes This situation has never happened before in the modern era and obviously represents a challenge in terms of rapidity and effectiveness of the actions needed.
T15 1912-2126 Sentence denotes As far as human resources are concerned, most of the cardiac surgeons not working in the hub centres have been part of multidisciplinary teams caring for patients affected by COVID-19 in internal medicine and ICUs.
T16 2127-2297 Sentence denotes Of course, being admitted to a hospital with COVID-19 patients significantly increases the risk of becoming infected, especially for patients with cardiovascular disease.
T17 2298-2373 Sentence denotes However, patients with cardiac emergencies/urgencies deserve to be treated.
T18 2374-2573 Sentence denotes So far, only a few papers have been published on the COVID-19 pandemic, and even fewer have been published on the challenges of restructuring the medical care system under these emergency conditions.
T19 2574-2794 Sentence denotes Herein, we briefly summarize how, for the first time in Europe since the start of the COVID-19 outbreak, the entire cardiac surgery system in the North Italian region of Lombardy was modified to deal with this emergency.
T20 2796-2810 Sentence denotes THE SARS-CoV-2
T21 2811-2888 Sentence denotes The family of coronaviruses is common across the world in animals and humans.
T22 2889-2967 Sentence denotes These viruses generally are transmitted by droplets and cause the common cold.
T23 2968-3121 Sentence denotes Occasionally they are responsible for more severe diseases like the Middle East respiratory syndrome and the SARS, both of which often lead to pneumonia.
T24 3122-3315 Sentence denotes The illness caused by SARS-CoV-2, a new strain of coronavirus not previously seen in humans, has been named COVID-19 (COVID-19: CO = corona; VI = virus; D = disease; 19 = year of outbreak) [1].
T25 3316-3459 Sentence denotes Because SARS-CoV-2 is a new virus, the lack of immunity in the population and the absence of an effective vaccine explain its worldwide spread.
T26 3460-3827 Sentence denotes On 31 December 2019, Chinese authorities notified the World Health Organization (WHO) of an outbreak of pneumonia in Wuhan City, which was later classified as a new disease (named COVID-19), whereas 1 month later the WHO declared the outbreak of COVID-19 a ‘Public Health Emergency of International Concern’, and finally designated it a pandemic on 11 March 2020 [2].
T27 3829-3869 Sentence denotes FROM THE CHINESE TO THE ITALIAN OUTBREAK
T28 3870-3939 Sentence denotes On 21 February 2020, Italy had its first SARS-CoV-2-positive patient.
T29 3940-4056 Sentence denotes He was a 38-year-old man with no comorbidities, who came in contact with a friend who had recently moved from China.
T30 4057-4163 Sentence denotes The patient, living in Codogno (a small town near Milan), developed severe pneumonia requiring intubation.
T31 4164-4197 Sentence denotes Then, the Italian outbreak began.
T32 4198-4327 Sentence denotes To date, Italy has been more seriously affected than China by COVID-19 in terms of coronavirus cases per 1 million of population.
T33 4328-4435 Sentence denotes The unexpected Italian outbreak may be explained by the recent expansion of airline connections with China.
T34 4436-4523 Sentence denotes On 8 March 2020, the Italian government announced the lockdown of the affected regions.
T35 4524-4665 Sentence denotes Two days, the quarantine was extended to the entire country (the first in the world), as new COVID-19 cases were detected across the country.
T36 4666-4857 Sentence denotes Emergency measures included social distancing; the suspension of community and sporting events; and the closure of commercial activities, restaurants, educational institutes and universities.
T37 4859-4871 Sentence denotes EPIDEMIOLOGY
T38 4872-5062 Sentence denotes By 31 March 2020, Italy had 77 635 cases positive for SARS-CoV-2; 15 729 recovered individuals and 12 428 patients killed by the virus, with a total of 105 792 people involved (Table 1) [3].
T39 5063-5252 Sentence denotes However, the data are changing every minute and, unfortunately, they are significantly underestimated due to false-negative testing results and the high number of paucisymptomatic patients.
T40 5253-5261 Sentence denotes Table 1:
T41 5263-5544 Sentence denotes Italian epidemiological situation updated on 31 March 2020 (Italian Ministry of Health data; see online version for current up-to-date data: http://www.salute.gov.it/portale/nuovocoronavirus/dettaglioNotizieNuovoCoronavirus.jsp?lingua=italiano&menu=notizie &p=dalministero&id=4648)
T42 5545-5632 Sentence denotes Region SARS-CoV-2 positive Discharged healed Deaths Total Naso-/oropharyngeal swab
T43 5633-5683 Sentence denotes Hospitalized with symptoms ICU Quarantine Total
T44 5684-5753 Sentence denotes Lombardy 11 883 1324 11 917 25 124 10 885 7199 43 208 114 640
T45 5754-5821 Sentence denotes Emilia Romagna 3765 353 6835 10 953 1477 1644 14 074 54 532
T46 5822-5876 Sentence denotes Veneto 1680 356 5814 7850 828 477 9155 106 238
T47 5877-5932 Sentence denotes Piedmont 3174 452 4456 8082 365 854 9301 27 658
T48 5933-5987 Sentence denotes Tuscany 1120 293 2813 4226 138 244 4608 33 165
T49 5988-6039 Sentence denotes Marche 946 169 2237 3352 21 452 3825 11 724
T50 6040-6094 Sentence denotes Liguria 1153 179 1176 2508 480 428 3416 10 376
T51 6095-6147 Sentence denotes Lazio 1127 173 1342 2642 291 162 3095 34 677
T52 6148-6201 Sentence denotes Campania 501 133 1237 1871 88 133 2092 14 403
T53 6202-6250 Sentence denotes Trento 354 80 955 1389 193 164 1746 6973
T54 6251-6301 Sentence denotes Apulia 609 105 940 1654 39 110 1803 14 073
T55 6302-6311 Sentence denotes Friuli V.
T56 6312-6314 Sentence denotes G.
T57 6316-6358 Sentence denotes 215 60 885 1160 320 113 1593 14 899
T58 6359-6407 Sentence denotes Sicily 503 72 917 1492 74 81 1647 15 634
T59 6408-6456 Sentence denotes Abruzzo 335 73 783 1191 95 115 1401 8758
T60 6457-6507 Sentence denotes Bolzano 249 62 831 1142 153 76 1371 11 275
T61 6508-6554 Sentence denotes Umbria 176 43 632 851 190 37 1078 8685
T62 6555-6601 Sentence denotes Sardinia 113 28 516 657 34 31 722 5257
T63 6602-6648 Sentence denotes Calabria 132 17 457 606 17 36 659 9327
T64 6649-6698 Sentence denotes Aosta Valley 91 26 435 552 20 56 628 1582
T65 6699-6744 Sentence denotes Basilicata 37 17 162 216 3 7 226 2043
T66 6745-6785 Sentence denotes Molise 29 8 80 117 18 9 144 1049
T67 6786-6855 Sentence denotes Total 28 192 4023 45 420 77 635 15 729 12 428 105 792 506 968
T68 6856-6922 Sentence denotes ICU: intensive care unit; SARS: severe acute respiratory syndrome.
T69 6923-7218 Sentence denotes Current evidence shows that the mortality rate from COVID-19 in Italy (∼10%) could be higher than the global mortality rate of 3.4% estimated by the WHO and significantly greater than the 0.1% from the seasonal influenza in the USA reported by the Centers for Disease Control and Prevention [4].
T70 7219-7405 Sentence denotes These alarming data may be partially explained by the ageing of the Italian population and the underestimated incidence of the SARS-CoV-2 due to restrictive indications for swab testing.
T71 7407-7425 Sentence denotes SIGNS AND SYMPTOMS
T72 7426-7541 Sentence denotes According to the US Centers for Disease Control and Prevention, the incubation period is between 2 and 14 days [5].
T73 7542-7754 Sentence denotes Early data show that SARS-CoV-2 could be asymptomatic or affect people with a mild illness similar to seasonal influenza [6] but that, in some cases pneumonia develops, with severe complications leading to death.
T74 7755-7884 Sentence denotes Dyspnoea, cough and general discomfort and fever are the most common symptoms, whereas haemoptysis and diarrhoea seem to be rare.
T75 7885-7992 Sentence denotes It has been reported that elderly persons infected with SARS-CoV-2 are at increased risk for complications.
T76 7993-8185 Sentence denotes Similar to the situation with seasonal influenza, underlying comorbidities (such as obesity, hypertension and diabetes mellitus) represent important risk factors for unfavourable outcomes [7].
T77 8186-8307 Sentence denotes Currently, neither a vaccine against SARS-CoV-2 nor any specific antiviral drug is available to defeat the infection [2].
T78 8308-8445 Sentence denotes Therefore, most therapies target symptoms and provide support to patients with complications, and most patients treat themselves at home.
T79 8447-8466 Sentence denotes HUB-AND-SPOKE MODEL
T80 8467-8661 Sentence denotes On 8 March 2020, in order to deal with the COVID-19 outbreak, the Lombardy regional government revised the entire regional healthcare system by introducing a temporary ‘hub and spoke’ model [8].
T81 8662-8903 Sentence denotes The hub-and-spoke system is an organizational model comprising a network of primary anchor centres (hubs), able to provide a wide spectrum of services, and secondary satellite establishments (spokes), which offer more limited assistance [9].
T82 8904-8980 Sentence denotes Patients in the spokes needing more intensive care are routed to their hubs.
T83 8981-9062 Sentence denotes This model provides a highly efficient organization and enhanced quality of care.
T84 9063-9301 Sentence denotes It has been used in several countries (i.e. Willis-Knighton Health System’s hub-and-spoke network, Shreveport, LA, USA) and even in rural areas with beneficial results (i.e. catheterization laboratories in the Tamil Nadu region of India).
T85 9302-9383 Sentence denotes However, some disadvantages include hub congestion and transportation challenges.
T86 9384-9441 Sentence denotes As defined by the Lombardy ordinance, hub centres should:
T87 9442-9572 Sentence denotes Guarantee patient access/hospitalization by providing multiple available medical teams (with at least 1 team on active duty 24/7).
T88 9573-9687 Sentence denotes Activate a ‘fast track’ for non-COVID emergency/urgent patients, thereby avoiding COVID-19 emergency room transit.
T89 9688-9761 Sentence denotes Welcome spoke teams in their respective hubs and encourage collaboration.
T90 9762-9830 Sentence denotes Ensure that patient transport is managed by the forwarding hospital.
T91 9831-10072 Sentence denotes A decision was made to apply this model to major trauma, stroke, emergencies/urgencies in neurosurgery, cardiovascular surgery and interventional cardiology (in particular for acute myocardial infarction and electrophysiological procedures).
T92 10073-10152 Sentence denotes An ordinary extracorporeal membrane oxygenation network was maintained as well.
T93 10153-10310 Sentence denotes A mean of 150–200 adult and 50 paediatric cardiac surgical procedures have been estimated per month in Lombardy, a region with almost 10 million inhabitants.
T94 10311-10444 Sentence denotes In contrast to our usual practice, patients from other regions are now treated in their own district because of transfer limitations.
T95 10445-10524 Sentence denotes Four adult and 1 paediatric cardiac surgery hubs have been identified (Fig. 1).
T96 10525-10772 Sentence denotes In the decision-making process, the following criteria were considered for the choice of the hub centres: the presence of dedicated 24/7 operating rooms (at least 3 simultaneously) and the presence of a COVID-free postoperative cardiovascular ICU.
T97 10773-10782 Sentence denotes Figure 1:
T98 10784-10885 Sentence denotes Lombardy emergency cardiac surgery hub-and-spoke system during the coronavirus disease 2019 epidemic.
T99 10886-11043 Sentence denotes This map shows the reorganization of the cardiac surgery system for emergency and urgent situations during the coronavirus disease-2019 outbreak in Lombardy:
T100 11044-11236 Sentence denotes 4 adult (A–D) hubs and 1 paediatric (E) hub have been identified; satellite spoke centres (in numbers) are asked to transfer patients needing emergency/urgent surgery to their respective hubs.
T101 11238-11287 Sentence denotes LOMBARDY CARDIAC SURGERY EMERGENCY REORGANIZATION
T102 11288-11438 Sentence denotes As a consequence of the ordinance, on 10 March 2020, the organizers of the cardiac surgery hub centres reached a consensus about the following issues:
T103 11439-11565 Sentence denotes Hub definitions for emergency, urgent and non-deferrable (surgery needed within 2 months) conditions (Table 2) were agreed on.
T104 11566-11687 Sentence denotes Naso- or oropharyngeal swabs must be performed preoperatively in all patients either in the spoke or in the hub hospital.
T105 11688-11989 Sentence denotes In addition, patients with symptoms who tested positive for the SARS-CoV-2 needing surgery within 2 months (so-called ‘non-deferrable’) will not be operated on whereas emergency/urgent patients with symptoms who tested positive will be operated on (if surgery is the only suitable therapeutic option).
T106 11990-12062 Sentence denotes The number of ICU beds available in each hub centre must be declared (S.
T107 12063-12152 Sentence denotes Raffaele, n = 14–20; Monzino, n = 11; Legnano, n = 8; Brescia, n = 4–6; total n = 37/45).
T108 12153-12318 Sentence denotes A hub centre must have or must be provided with laboratory facilities for rapid diagnosis of SARS-CoV-2 (i.e. using reverse transcription polymerase chain reaction).
T109 12319-12400 Sentence denotes Weekly video meetings among hub centres will be held to share up-to-date reports.
T110 12401-12536 Sentence denotes Hub-and-spoke units must cooperate, particularly as relates to the rotation of the surgical teams in case of exhausting working shifts.
T111 12537-12813 Sentence denotes Transcatheter options (i.e. transcatheter aortic valve implantation, percutaneous balloon aortic valvuloplasty, percutaneous coronary intervention) should be considered in non-deferrable/emergency/urgent COVID patients affected by aortic stenosis and/or ischaemic cardiopathy.
T112 12814-12913 Sentence denotes Considering the limited number of ICU beds, surgical triage must favour emergency and urgent cases.
T113 12914-12922 Sentence denotes Table 2:
T114 12924-13026 Sentence denotes Definitions of emergency/urgent cardiac surgery cases adopted in Lombardy during the COVID-19 outbreak
T115 13027-13191 Sentence denotes Acute aortic syndrome Acute aortic dissection/intramural haematoma (excluding patients with coma OR age >80 years with stroke and/or evident visceral malperfusion)
T116 13192-13223 Sentence denotes Ascending aortic aneurysm ≥6 cm
T117 13224-13262 Sentence denotes Ascending aortic aneurysm ≥5.5 cm AND:
T118 13263-13302 Sentence denotes Marfan syndrome/other collagenopathy OR
T119 13303-13334 Sentence denotes Aneurysm increase >5 mm/year OR
T120 13335-13360 Sentence denotes Uncontrolled hypertension
T121 13361-13461 Sentence denotes Aortic valve Severe aortic stenosis AND symptoms (i.e. lipotimia OR angina OR dyspnoea NYHA III/IV)
T122 13462-13494 Sentence denotes Severe aortic regurgitation AND:
T123 13495-13511 Sentence denotes Pulmonary oedema
T124 13512-13536 Sentence denotes Haemodynamic instability
T125 13537-13578 Sentence denotes Mitral valve Severe mitral stenosis AND:
T126 13579-13598 Sentence denotes Pulmonary oedema OR
T127 13599-13623 Sentence denotes Haemodynamic instability
T128 13624-13626 Sentence denotes 2.
T129 13627-13721 Sentence denotes Acute mitral insufficiency due to papillary muscle/chordal rupture leading to pulmonary oedema
T130 13722-13760 Sentence denotes Ischaemic cardiopathy Unstable angina
T131 13761-13786 Sentence denotes Severe LMCA stenosis ≥70%
T132 13787-13842 Sentence denotes Subocclusive proximal LAD stenosis not suitable for PCI
T133 13843-13892 Sentence denotes Postinfarction ventricular septal/cardiac rupture
T134 13893-14044 Sentence denotes Acute endocarditis Emergency or urgent cases (as defined by European Society of Cardiology/European Association of Cardio-Thoracic Surgery Guidelines)
T135 14045-14135 Sentence denotes Severe bioprosthetic/mechanical valve dysfunction Emergency or urgent cases resulting in:
T136 14136-14152 Sentence denotes Heart failure OR
T137 14153-14177 Sentence denotes Haemodynamic instability
T138 14178-14234 Sentence denotes Heart failure Non-deferrable need for LVAD implantation
T139 14235-14267 Sentence denotes Miscellaneous Cardiac tamponade
T140 14268-14312 Sentence denotes Atrial myxoma OR other cardiac tumours with:
T141 14313-14333 Sentence denotes High embolic risk OR
T142 14334-14373 Sentence denotes In the presence of AV valve obstruction
T143 14374-14539 Sentence denotes AV: atrioventricular; COVID-19: coronavirus disease 2019; LAD: left anterior descending; LMCA: left main coronary artery; LVAD: left ventricular assist device; NYHA:
T144 14540-14608 Sentence denotes New York Heart Association; PCI: percutaneous coronary intervention.
T145 14609-14651 Sentence denotes The following issues were also considered:
T146 14652-14752 Sentence denotes The length of hospital stay after cardiac surgery is longer than that after percutaneous procedures.
T147 14753-14899 Sentence denotes In addition, although hub centres have to have COVID-free wards, hospital congestion is likely to increase the risk of in-hospitals transmissions.
T148 14900-15019 Sentence denotes As a consequence, under these extraordinary circumstances, transcatheter options may be considered more liberally [10].
T149 15020-15216 Sentence denotes Whenever possible, the postoperative in-hospital stay and rehabilitation period should be reduced to a minimum, encouraging ‘early discharge’, thereby lowering the risk of SARS-CoV-2 transmission.
T150 15217-15536 Sentence denotes Patients who are SARS-CoV-2 positive and who require emergency/urgent/non-deferrable cardiac surgery have to be treated in a specific COVID-19 pathway, which comprises dedicated COVID-19 negative pressure operating rooms, with specific protocols for cleaning; the postoperative stay will be confined to COVID-ICU/wards.
T151 15537-15751 Sentence denotes Cardiovascular healthcare personnel directly involved in the treatment of SARS-CoV-2-positive patients are required to use specific protective equipment (i.e. FFP2/FFP3 masks), similar to those used in COVID wards.
T152 15752-16139 Sentence denotes In addition, in emergency situations in which the result of swab testing is not available at the moment of surgery (it usually takes some hours to complete reverse transcription polymerase chain reaction laboratory testing), it must be assumed that the patient could be SARS-CoV-2 positive; therefore, as a precaution, the operation will be performed in a dedicated COVID operating room.
T153 16140-16319 Sentence denotes Patients who have had a recent cardiac operation are at increased risk of acquiring the infection during the postoperative period despite the establishment of COVID-free pathways.
T154 16320-16481 Sentence denotes In case of novel coronavirus superinfection in the interval after cardiac surgery, aggressive ventilation support and early antiviral therapy should be provided.
T155 16483-16494 Sentence denotes CONCLUSIONS
T156 16495-16611 Sentence denotes The Italian COVID-19 emergency, on a scale never before seen, represents a tremendous burden for society as a whole.
T157 16612-16734 Sentence denotes The government quickly established quarantine measures, but the first positive effects will only be seen after some weeks.
T158 16735-16826 Sentence denotes Unfortunately, the mortality rate seems much higher than that reported for other countries.
T159 16827-16906 Sentence denotes Further investigations are necessary to clarify the reasons for such virulence.
T160 16907-17167 Sentence denotes The entire healthcare system is facing difficult challenges, but the introduction of a different organization model during the COVID-19 outbreak may be extremely helpful and should be able to satisfy all emergency needs, especially in the cardiovascular field.
T161 17168-17252 Sentence denotes The results of this new network will be determined only at the end of this pandemic.
T162 17253-17406 Sentence denotes By describing the Lombardy cardiac surgery reorganization model, we are sharing with the cardiovascular community our response to this amazing challenge.
T163 17407-17483 Sentence denotes We hope, by so doing, to be of help to other countries facing this pandemic.
T164 17485-17501 Sentence denotes ACKNOWLEDGEMENTS
T165 17502-17628 Sentence denotes The authors thank all physicians, nurses and healthcare providers for their incredible efforts in assisting COVID-19 patients.
T166 17629-17665 Sentence denotes Conflict of interest: none declared.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 2274-2296 Phenotype denotes cardiovascular disease http://purl.obolibrary.org/obo/HP_0001626
T2 3111-3120 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T3 3564-3573 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T4 4132-4141 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T5 7691-7700 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T6 7755-7763 Phenotype denotes Dyspnoea http://purl.obolibrary.org/obo/HP_0002094
T7 7765-7770 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T8 7798-7803 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T9 7842-7853 Phenotype denotes haemoptysis http://purl.obolibrary.org/obo/HP_0002105
T10 7858-7867 Phenotype denotes diarrhoea http://purl.obolibrary.org/obo/HP_0002014
T11 8077-8084 Phenotype denotes obesity http://purl.obolibrary.org/obo/HP_0001513
T12 8086-8098 Phenotype denotes hypertension http://purl.obolibrary.org/obo/HP_0000822
T13 8103-8120 Phenotype denotes diabetes mellitus http://purl.obolibrary.org/obo/HP_0000819
T14 9888-9894 Phenotype denotes stroke http://purl.obolibrary.org/obo/HP_0001297
T15 10013-10034 Phenotype denotes myocardial infarction http://purl.obolibrary.org/obo/HP_0001658
T16 12768-12783 Phenotype denotes aortic stenosis http://purl.obolibrary.org/obo/HP_0001650
T17 13056-13073 Phenotype denotes aortic dissection http://purl.obolibrary.org/obo/HP_0002647
T18 13120-13124 Phenotype denotes coma http://purl.obolibrary.org/obo/HP_0001259
T19 13147-13153 Phenotype denotes stroke http://purl.obolibrary.org/obo/HP_0001297
T20 13192-13217 Phenotype denotes Ascending aortic aneurysm http://purl.obolibrary.org/obo/HP_0004970
T21 13224-13249 Phenotype denotes Ascending aortic aneurysm http://purl.obolibrary.org/obo/HP_0004970
T22 13303-13311 Phenotype denotes Aneurysm http://purl.obolibrary.org/obo/HP_0002617
T23 13348-13360 Phenotype denotes hypertension http://purl.obolibrary.org/obo/HP_0000822
T24 13382-13397 Phenotype denotes aortic stenosis http://purl.obolibrary.org/obo/HP_0001650
T25 13440-13448 Phenotype denotes dyspnoea http://purl.obolibrary.org/obo/HP_0002094
T26 13469-13489 Phenotype denotes aortic regurgitation http://purl.obolibrary.org/obo/HP_0001659
T27 13495-13511 Phenotype denotes Pulmonary oedema http://purl.obolibrary.org/obo/HP_0100598
T28 13558-13573 Phenotype denotes mitral stenosis http://purl.obolibrary.org/obo/HP_0001718
T29 13579-13595 Phenotype denotes Pulmonary oedema http://purl.obolibrary.org/obo/HP_0100598
T30 13633-13653 Phenotype denotes mitral insufficiency http://purl.obolibrary.org/obo/HP_0001653
T31 13705-13721 Phenotype denotes pulmonary oedema http://purl.obolibrary.org/obo/HP_0100598
T32 13899-13911 Phenotype denotes endocarditis http://purl.obolibrary.org/obo/HP_0100584
T33 14136-14149 Phenotype denotes Heart failure http://purl.obolibrary.org/obo/HP_0001635
T34 14178-14191 Phenotype denotes Heart failure http://purl.obolibrary.org/obo/HP_0001635

MyTest

Id Subject Object Predicate Lexical cue
32437514-32309796-28906075 277-278 32309796 denotes 1
32437514-32309796-28906076 3312-3313 32309796 denotes 1
32437514-32150748-28906077 7538-7539 32150748 denotes 5
32437514-32075786-28906078 7664-7665 32075786 denotes 6
32437514-31986264-28906079 8182-8183 31986264 denotes 7
32437514-28722550-28906080 8900-8901 28722550 denotes 9
32437514-28886619-28906081 15015-15017 28886619 denotes 10

0_colil

Id Subject Object Predicate Lexical cue
32437514-32309796-8062 277-278 32309796 denotes 1
32437514-32309796-8063 3312-3313 32309796 denotes 1
32437514-32150748-8064 7538-7539 32150748 denotes 5
32437514-32075786-8065 7664-7665 32075786 denotes 6
32437514-31986264-8066 8182-8183 31986264 denotes 7
32437514-28722550-8067 8900-8901 28722550 denotes 9
32437514-28886619-8068 15015-15017 28886619 denotes 10

2_test

Id Subject Object Predicate Lexical cue
32437514-32309796-28906075 277-278 32309796 denotes 1
32437514-32309796-28906076 3312-3313 32309796 denotes 1
32437514-32150748-28906077 7538-7539 32150748 denotes 5
32437514-32075786-28906078 7664-7665 32075786 denotes 6
32437514-31986264-28906079 8182-8183 31986264 denotes 7
32437514-28722550-28906080 8900-8901 28722550 denotes 9
32437514-28886619-28906081 15015-15017 28886619 denotes 10