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PMC:7309518 / 971-1759 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T4 170-181 Body_part denotes ganglioside http://purl.org/sig/ont/fma/fma82816
T5 263-270 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T6 308-321 Body_part denotes glycoproteins http://purl.org/sig/ont/fma/fma62925
T7 326-330 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T8 439-451 Body_part denotes gangliosides http://purl.org/sig/ont/fma/fma82816
T9 456-472 Body_part denotes peripheral nerve http://purl.org/sig/ont/fma/fma65239
T10 473-484 Body_part denotes glycolipids http://purl.org/sig/ont/fma/fma82780
T11 626-632 Body_part denotes muscle http://purl.org/sig/ont/fma/fma32558
T12 752-761 Body_part denotes brainstem http://purl.org/sig/ont/fma/fma79876

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T2 467-472 Body_part denotes nerve http://purl.obolibrary.org/obo/UBERON_0001021
T3 752-761 Body_part denotes brainstem http://purl.obolibrary.org/obo/UBERON_0002298

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T22 16-24 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T23 26-33 Disease denotes Anosmia http://purl.obolibrary.org/obo/MONDO_0010528
T24 50-70 Disease denotes cranial neuropathies http://purl.obolibrary.org/obo/MONDO_0003569
T25 75-90 Disease denotes lymphocytopenia http://purl.obolibrary.org/obo/MONDO_0003783
T26 146-168 Disease denotes Miller-Fisher Syndrome http://purl.obolibrary.org/obo/MONDO_0005851
T27 248-256 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T28 385-395 Disease denotes neuropathy http://purl.obolibrary.org/obo/MONDO_0005244
T29 422-430 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T30 557-565 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T31 677-685 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T32 696-699 Disease denotes NAM http://purl.obolibrary.org/obo/MONDO_0009722|http://purl.obolibrary.org/obo/MONDO_0016098
T34 762-774 Disease denotes encephalitis http://purl.obolibrary.org/obo/MONDO_0019956

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T3 326-330 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T4 456-472 http://purl.obolibrary.org/obo/UBERON_0001021 denotes peripheral nerve
T5 626-632 http://purl.obolibrary.org/obo/UBERON_0001630 denotes muscle
T6 626-632 http://purl.obolibrary.org/obo/UBERON_0005090 denotes muscle
T7 626-632 http://www.ebi.ac.uk/efo/EFO_0000801 denotes muscle
T8 626-632 http://www.ebi.ac.uk/efo/EFO_0001949 denotes muscle

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T3 170-181 Chemical denotes ganglioside http://purl.obolibrary.org/obo/CHEBI_28892
T4 201-205 Chemical denotes GD1b http://purl.obolibrary.org/obo/CHEBI_28175
T5 263-270 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T6 285-296 Chemical denotes sialic acid http://purl.obolibrary.org/obo/CHEBI_26667
T7 292-296 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T8 308-321 Chemical denotes glycoproteins http://purl.obolibrary.org/obo/CHEBI_17089
T9 346-350 Chemical denotes GD1b http://purl.obolibrary.org/obo/CHEBI_28175
T10 439-451 Chemical denotes gangliosides http://purl.obolibrary.org/obo/CHEBI_28892
T11 473-484 Chemical denotes glycolipids http://purl.obolibrary.org/obo/CHEBI_33563
T12 509-517 Chemical denotes Creatine http://purl.obolibrary.org/obo/CHEBI_16919

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
49 509-524 Gene denotes Creatine Kinase Gene:51727
51 99-104 Species denotes flags Tax:34205
52 575-583 Species denotes patients Tax:9606
53 594-602 Species denotes patients Tax:9606
54 170-181 Chemical denotes ganglioside MESH:D005732
55 285-296 Chemical denotes sialic acid MESH:D019158
56 439-451 Chemical denotes gangliosides MESH:D005732
57 473-484 Chemical denotes glycolipids MESH:D006017
64 16-24 Disease denotes COVID-19 MESH:C000657245
65 35-42 Disease denotes ageusia MESH:D000370
66 50-70 Disease denotes cranial neuropathies MESH:D003389
67 75-90 Disease denotes lymphocytopenia MESH:D008231
68 146-168 Disease denotes Miller-Fisher Syndrome MESH:D019846
69 248-256 Disease denotes COVID-19 MESH:C000657245
70 378-395 Disease denotes ataxic neuropathy MESH:D001039
71 422-430 Disease denotes COVID-19 MESH:C000657245
72 557-574 Disease denotes COVID-19–infected MESH:C000657245
73 618-641 Disease denotes painful muscle weakness MESH:D018908
74 677-685 Disease denotes COVID-19 MESH:C000657245
75 762-774 Disease denotes encephalitis MESH:D004660

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T12 26-142 Sentence denotes Anosmia, ageusia, other cranial neuropathies and lymphocytopenia are red flags enhancing early diagnostic suspicion.
T13 143-499 Sentence denotes In Miller-Fisher Syndrome, ganglioside antibodies against GD1b, instead of QG1b, were found; because the COVID-19 spike protein also binds to sialic acid-containing glycoproteins for cell-entry and anti-GD1b antibodies typically cause ataxic neuropathy, cross-reactivity between COVID-19–bearing gangliosides and peripheral nerve glycolipids was addressed.
T14 500-724 Sentence denotes Elevated Creatine Kinase (>10,000) is reported in 10% of COVID-19–infected patients; two such patients presented with painful muscle weakness responding to IVIg indicating that COVID-19–triggered NAM is an overlooked entity.

LitCovid-PD-GlycoEpitope

Id Subject Object Predicate Lexical cue glyco_epitope_db_id
T1 201-205 GlycoEpitope denotes GD1b http://www.glycoepitope.jp/epitopes/EP0059
T2 341-350 GlycoEpitope denotes anti-GD1b http://www.glycoepitope.jp/epitopes/AN0403
T3 346-350 GlycoEpitope denotes GD1b http://www.glycoepitope.jp/epitopes/EP0059

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T8 26-33 Phenotype denotes Anosmia http://purl.obolibrary.org/obo/HP_0000458
T9 35-42 Phenotype denotes ageusia http://purl.obolibrary.org/obo/HP_0041051
T10 75-90 Phenotype denotes lymphocytopenia http://purl.obolibrary.org/obo/HP_0001888
T11 385-395 Phenotype denotes neuropathy http://purl.obolibrary.org/obo/HP_0009830
T12 500-524 Phenotype denotes Elevated Creatine Kinase http://purl.obolibrary.org/obo/HP_0003236
T13 626-641 Phenotype denotes muscle weakness http://purl.obolibrary.org/obo/HP_0001324
T14 762-774 Phenotype denotes encephalitis http://purl.obolibrary.org/obo/HP_0002383