PMC:7309518 / 699-1472
Annnotations
LitCovid-PD-FMA-UBERON
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T4 | 442-453 | Body_part | denotes | ganglioside | http://purl.org/sig/ont/fma/fma82816 |
T5 | 535-542 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
T6 | 580-593 | Body_part | denotes | glycoproteins | http://purl.org/sig/ont/fma/fma62925 |
T7 | 598-602 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
T8 | 711-723 | Body_part | denotes | gangliosides | http://purl.org/sig/ont/fma/fma82816 |
T9 | 728-744 | Body_part | denotes | peripheral nerve | http://purl.org/sig/ont/fma/fma65239 |
T10 | 745-756 | Body_part | denotes | glycolipids | http://purl.org/sig/ont/fma/fma82780 |
LitCovid-PD-UBERON
Id | Subject | Object | Predicate | Lexical cue | uberon_id |
---|---|---|---|---|---|
T2 | 739-744 | Body_part | denotes | nerve | http://purl.obolibrary.org/obo/UBERON_0001021 |
LitCovid-PD-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T18 | 180-183 | Disease | denotes | GBS | http://purl.obolibrary.org/obo/MONDO_0016218 |
T19 | 185-202 | Disease | denotes | encephalomyelitis | http://purl.obolibrary.org/obo/MONDO_0005156 |
T20 | 206-214 | Disease | denotes | myositis | http://purl.obolibrary.org/obo/MONDO_0008054|http://purl.obolibrary.org/obo/MONDO_0021167 |
T22 | 288-296 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T23 | 298-305 | Disease | denotes | Anosmia | http://purl.obolibrary.org/obo/MONDO_0010528 |
T24 | 322-342 | Disease | denotes | cranial neuropathies | http://purl.obolibrary.org/obo/MONDO_0003569 |
T25 | 347-362 | Disease | denotes | lymphocytopenia | http://purl.obolibrary.org/obo/MONDO_0003783 |
T26 | 418-440 | Disease | denotes | Miller-Fisher Syndrome | http://purl.obolibrary.org/obo/MONDO_0005851 |
T27 | 520-528 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T28 | 657-667 | Disease | denotes | neuropathy | http://purl.obolibrary.org/obo/MONDO_0005244 |
T29 | 694-702 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
LitCovid-PD-CLO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T3 | 598-602 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
T4 | 728-744 | http://purl.obolibrary.org/obo/UBERON_0001021 | denotes | peripheral nerve |
LitCovid-PD-CHEBI
Id | Subject | Object | Predicate | Lexical cue | chebi_id |
---|---|---|---|---|---|
T3 | 442-453 | Chemical | denotes | ganglioside | http://purl.obolibrary.org/obo/CHEBI_28892 |
T4 | 473-477 | Chemical | denotes | GD1b | http://purl.obolibrary.org/obo/CHEBI_28175 |
T5 | 535-542 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
T6 | 557-568 | Chemical | denotes | sialic acid | http://purl.obolibrary.org/obo/CHEBI_26667 |
T7 | 564-568 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
T8 | 580-593 | Chemical | denotes | glycoproteins | http://purl.obolibrary.org/obo/CHEBI_17089 |
T9 | 618-622 | Chemical | denotes | GD1b | http://purl.obolibrary.org/obo/CHEBI_28175 |
T10 | 711-723 | Chemical | denotes | gangliosides | http://purl.obolibrary.org/obo/CHEBI_28892 |
T11 | 745-756 | Chemical | denotes | glycolipids | http://purl.obolibrary.org/obo/CHEBI_33563 |
LitCovid-PubTator
Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
---|---|---|---|---|---|
50 | 124-131 | Species | denotes | patient | Tax:9606 |
51 | 371-376 | Species | denotes | flags | Tax:34205 |
54 | 442-453 | Chemical | denotes | ganglioside | MESH:D005732 |
55 | 557-568 | Chemical | denotes | sialic acid | MESH:D019158 |
56 | 711-723 | Chemical | denotes | gangliosides | MESH:D005732 |
57 | 745-756 | Chemical | denotes | glycolipids | MESH:D006017 |
61 | 151-174 | Disease | denotes | acute paralytic disease | MESH:D000208 |
62 | 185-202 | Disease | denotes | encephalomyelitis | MESH:D004679 |
63 | 206-214 | Disease | denotes | myositis | MESH:D009220 |
64 | 288-296 | Disease | denotes | COVID-19 | MESH:C000657245 |
65 | 307-314 | Disease | denotes | ageusia | MESH:D000370 |
66 | 322-342 | Disease | denotes | cranial neuropathies | MESH:D003389 |
67 | 347-362 | Disease | denotes | lymphocytopenia | MESH:D008231 |
68 | 418-440 | Disease | denotes | Miller-Fisher Syndrome | MESH:D019846 |
69 | 520-528 | Disease | denotes | COVID-19 | MESH:C000657245 |
70 | 650-667 | Disease | denotes | ataxic neuropathy | MESH:D001039 |
71 | 694-702 | Disease | denotes | COVID-19 | MESH:C000657245 |
LitCovid-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T10 | 65-72 | Sentence | denotes | Results |
T11 | 73-297 | Sentence | denotes | Collective data indicate that in this pandemic any patient presenting with an acute paralytic disease-like GBS, encephalomyelitis or myositis-even without systemic symptoms, may represent the first manifestation of COVID-19. |
T12 | 298-414 | Sentence | denotes | Anosmia, ageusia, other cranial neuropathies and lymphocytopenia are red flags enhancing early diagnostic suspicion. |
T13 | 415-771 | Sentence | denotes | In Miller-Fisher Syndrome, ganglioside antibodies against GD1b, instead of QG1b, were found; because the COVID-19 spike protein also binds to sialic acid-containing glycoproteins for cell-entry and anti-GD1b antibodies typically cause ataxic neuropathy, cross-reactivity between COVID-19–bearing gangliosides and peripheral nerve glycolipids was addressed. |
LitCovid-PD-GlycoEpitope
Id | Subject | Object | Predicate | Lexical cue | glyco_epitope_db_id |
---|---|---|---|---|---|
T1 | 473-477 | GlycoEpitope | denotes | GD1b | http://www.glycoepitope.jp/epitopes/EP0059 |
T2 | 613-622 | GlycoEpitope | denotes | anti-GD1b | http://www.glycoepitope.jp/epitopes/AN0403 |
T3 | 618-622 | GlycoEpitope | denotes | GD1b | http://www.glycoepitope.jp/epitopes/EP0059 |
LitCovid-PD-HP
Id | Subject | Object | Predicate | Lexical cue | hp_id |
---|---|---|---|---|---|
T6 | 22-34 | Phenotype | denotes | autoimmunity | http://purl.obolibrary.org/obo/HP_0002960 |
T7 | 206-214 | Phenotype | denotes | myositis | http://purl.obolibrary.org/obo/HP_0100614 |
T8 | 298-305 | Phenotype | denotes | Anosmia | http://purl.obolibrary.org/obo/HP_0000458 |
T9 | 307-314 | Phenotype | denotes | ageusia | http://purl.obolibrary.org/obo/HP_0041051 |
T10 | 347-362 | Phenotype | denotes | lymphocytopenia | http://purl.obolibrary.org/obo/HP_0001888 |
T11 | 657-667 | Phenotype | denotes | neuropathy | http://purl.obolibrary.org/obo/HP_0009830 |