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PMC:7309518 / 0-1792 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 540-548 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T2 554-559 Body_part denotes nerve http://purl.org/sig/ont/fma/fma65132
T3 560-571 Body_part denotes glycolipids http://purl.org/sig/ont/fma/fma82780
T4 1141-1152 Body_part denotes ganglioside http://purl.org/sig/ont/fma/fma82816
T5 1234-1241 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T6 1279-1292 Body_part denotes glycoproteins http://purl.org/sig/ont/fma/fma62925
T7 1297-1301 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T8 1410-1422 Body_part denotes gangliosides http://purl.org/sig/ont/fma/fma82816
T9 1427-1443 Body_part denotes peripheral nerve http://purl.org/sig/ont/fma/fma65239
T10 1444-1455 Body_part denotes glycolipids http://purl.org/sig/ont/fma/fma82780
T11 1597-1603 Body_part denotes muscle http://purl.org/sig/ont/fma/fma32558
T12 1723-1732 Body_part denotes brainstem http://purl.org/sig/ont/fma/fma79876

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 554-559 Body_part denotes nerve http://purl.obolibrary.org/obo/UBERON_0001021
T2 1438-1443 Body_part denotes nerve http://purl.obolibrary.org/obo/UBERON_0001021
T3 1723-1732 Body_part denotes brainstem http://purl.obolibrary.org/obo/UBERON_0002298

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 0-23 Disease denotes Guillain-Barré syndrome http://purl.obolibrary.org/obo/MONDO_0016218
T2 46-54 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T3 76-94 Disease denotes neurologic disease http://purl.obolibrary.org/obo/MONDO_0005071
T4 113-121 Disease denotes myositis http://purl.obolibrary.org/obo/MONDO_0008054|http://purl.obolibrary.org/obo/MONDO_0021167
T6 171-179 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T7 191-194 Disease denotes GBS http://purl.obolibrary.org/obo/MONDO_0016218
T8 227-245 Disease denotes autoimmune disease http://purl.obolibrary.org/obo/MONDO_0007179
T9 280-288 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T10 397-400 Disease denotes GBS http://purl.obolibrary.org/obo/MONDO_0016218
T11 419-427 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T12 591-599 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T13 610-641 Disease denotes autoimmune necrotizing myositis http://purl.obolibrary.org/obo/MONDO_0016098
T14 633-641 Disease denotes myositis http://purl.obolibrary.org/obo/MONDO_0008054|http://purl.obolibrary.org/obo/MONDO_0021167
T16 643-646 Disease denotes NAM http://purl.obolibrary.org/obo/MONDO_0009722|http://purl.obolibrary.org/obo/MONDO_0016098
T18 879-882 Disease denotes GBS http://purl.obolibrary.org/obo/MONDO_0016218
T19 884-901 Disease denotes encephalomyelitis http://purl.obolibrary.org/obo/MONDO_0005156
T20 905-913 Disease denotes myositis http://purl.obolibrary.org/obo/MONDO_0008054|http://purl.obolibrary.org/obo/MONDO_0021167
T22 987-995 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T23 997-1004 Disease denotes Anosmia http://purl.obolibrary.org/obo/MONDO_0010528
T24 1021-1041 Disease denotes cranial neuropathies http://purl.obolibrary.org/obo/MONDO_0003569
T25 1046-1061 Disease denotes lymphocytopenia http://purl.obolibrary.org/obo/MONDO_0003783
T26 1117-1139 Disease denotes Miller-Fisher Syndrome http://purl.obolibrary.org/obo/MONDO_0005851
T27 1219-1227 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T28 1356-1366 Disease denotes neuropathy http://purl.obolibrary.org/obo/MONDO_0005244
T29 1393-1401 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T30 1528-1536 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T31 1648-1656 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T32 1667-1670 Disease denotes NAM http://purl.obolibrary.org/obo/MONDO_0009722|http://purl.obolibrary.org/obo/MONDO_0016098
T34 1733-1745 Disease denotes encephalitis http://purl.obolibrary.org/obo/MONDO_0019956
T35 1747-1767 Disease denotes cranial neuropathies http://purl.obolibrary.org/obo/MONDO_0003569

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 146-155 http://purl.obolibrary.org/obo/BFO_0000030 denotes Objective
T2 554-559 http://purl.obolibrary.org/obo/UBERON_0001021 denotes nerve
T3 1297-1301 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T4 1427-1443 http://purl.obolibrary.org/obo/UBERON_0001021 denotes peripheral nerve
T5 1597-1603 http://purl.obolibrary.org/obo/UBERON_0001630 denotes muscle
T6 1597-1603 http://purl.obolibrary.org/obo/UBERON_0005090 denotes muscle
T7 1597-1603 http://www.ebi.ac.uk/efo/EFO_0000801 denotes muscle
T8 1597-1603 http://www.ebi.ac.uk/efo/EFO_0001949 denotes muscle

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 540-548 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T2 560-571 Chemical denotes glycolipids http://purl.obolibrary.org/obo/CHEBI_33563
T3 1141-1152 Chemical denotes ganglioside http://purl.obolibrary.org/obo/CHEBI_28892
T4 1172-1176 Chemical denotes GD1b http://purl.obolibrary.org/obo/CHEBI_28175
T5 1234-1241 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T6 1256-1267 Chemical denotes sialic acid http://purl.obolibrary.org/obo/CHEBI_26667
T7 1263-1267 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T8 1279-1292 Chemical denotes glycoproteins http://purl.obolibrary.org/obo/CHEBI_17089
T9 1317-1321 Chemical denotes GD1b http://purl.obolibrary.org/obo/CHEBI_28175
T10 1410-1422 Chemical denotes gangliosides http://purl.obolibrary.org/obo/CHEBI_28892
T11 1444-1455 Chemical denotes glycolipids http://purl.obolibrary.org/obo/CHEBI_33563
T12 1480-1488 Chemical denotes Creatine http://purl.obolibrary.org/obo/CHEBI_16919

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
2 46-54 Disease denotes COVID-19 MESH:C000657245
3 65-94 Disease denotes autoimmune neurologic disease MESH:D020274
7 171-179 Disease denotes COVID-19 MESH:C000657245
8 227-245 Disease denotes autoimmune disease MESH:D001327
9 280-288 Disease denotes COVID-19 MESH:C000657245
15 419-427 Disease denotes COVID-19 MESH:C000657245
16 528-533 Disease denotes COVID MESH:C000657245
17 591-599 Disease denotes COVID-19 MESH:C000657245
18 610-641 Disease denotes autoimmune necrotizing myositis MESH:D020721
19 652-668 Disease denotes encephalopathies MESH:D001927
49 1480-1495 Gene denotes Creatine Kinase Gene:51727
50 823-830 Species denotes patient Tax:9606
51 1070-1075 Species denotes flags Tax:34205
52 1546-1554 Species denotes patients Tax:9606
53 1565-1573 Species denotes patients Tax:9606
54 1141-1152 Chemical denotes ganglioside MESH:D005732
55 1256-1267 Chemical denotes sialic acid MESH:D019158
56 1410-1422 Chemical denotes gangliosides MESH:D005732
57 1444-1455 Chemical denotes glycolipids MESH:D006017
61 850-873 Disease denotes acute paralytic disease MESH:D000208
62 884-901 Disease denotes encephalomyelitis MESH:D004679
63 905-913 Disease denotes myositis MESH:D009220
64 987-995 Disease denotes COVID-19 MESH:C000657245
65 1006-1013 Disease denotes ageusia MESH:D000370
66 1021-1041 Disease denotes cranial neuropathies MESH:D003389
67 1046-1061 Disease denotes lymphocytopenia MESH:D008231
68 1117-1139 Disease denotes Miller-Fisher Syndrome MESH:D019846
69 1219-1227 Disease denotes COVID-19 MESH:C000657245
70 1349-1366 Disease denotes ataxic neuropathy MESH:D001039
71 1393-1401 Disease denotes COVID-19 MESH:C000657245
72 1528-1545 Disease denotes COVID-19–infected MESH:C000657245
73 1589-1612 Disease denotes painful muscle weakness MESH:D018908
74 1648-1656 Disease denotes COVID-19 MESH:C000657245
75 1733-1745 Disease denotes encephalitis MESH:D004660
76 1747-1767 Disease denotes cranial neuropathies MESH:D003389

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-24 Sentence denotes Guillain-Barré syndrome:
T2 25-94 Sentence denotes The first documented COVID-19–triggered autoimmune neurologic disease
T3 95-135 Sentence denotes More to come with myositis in the offing
T4 137-145 Sentence denotes Abstract
T5 146-155 Sentence denotes Objective
T6 156-380 Sentence denotes To present the COVID-19–associated GBS, the prototypic viral-triggered autoimmune disease, in the context of other emerging COVID-19–triggered autoimmunities, and discuss potential concerns with ongoing neuroimmunotherapies.
T7 382-389 Sentence denotes Methods
T8 390-572 Sentence denotes Eleven GBS cases in four key COVID-19 hotspots are discussed regarding presenting symptoms, response to therapies and cross-reactivity of COVID spike proteins with nerve glycolipids.
T9 573-762 Sentence denotes Emerging cases of COVID-19–triggered autoimmune necrotizing myositis (NAM) and encephalopathies are also reviewed in the context of viral invasion, autoimmunity and ongoing immunotherapies.
T10 764-771 Sentence denotes Results
T11 772-996 Sentence denotes Collective data indicate that in this pandemic any patient presenting with an acute paralytic disease-like GBS, encephalomyelitis or myositis-even without systemic symptoms, may represent the first manifestation of COVID-19.
T12 997-1113 Sentence denotes Anosmia, ageusia, other cranial neuropathies and lymphocytopenia are red flags enhancing early diagnostic suspicion.
T13 1114-1470 Sentence denotes In Miller-Fisher Syndrome, ganglioside antibodies against GD1b, instead of QG1b, were found; because the COVID-19 spike protein also binds to sialic acid-containing glycoproteins for cell-entry and anti-GD1b antibodies typically cause ataxic neuropathy, cross-reactivity between COVID-19–bearing gangliosides and peripheral nerve glycolipids was addressed.
T14 1471-1695 Sentence denotes Elevated Creatine Kinase (>10,000) is reported in 10% of COVID-19–infected patients; two such patients presented with painful muscle weakness responding to IVIg indicating that COVID-19–triggered NAM is an overlooked entity.

LitCovid-PD-GlycoEpitope

Id Subject Object Predicate Lexical cue glyco_epitope_db_id
T1 1172-1176 GlycoEpitope denotes GD1b http://www.glycoepitope.jp/epitopes/EP0059
T2 1312-1321 GlycoEpitope denotes anti-GD1b http://www.glycoepitope.jp/epitopes/AN0403
T3 1317-1321 GlycoEpitope denotes GD1b http://www.glycoepitope.jp/epitopes/EP0059

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 113-121 Phenotype denotes myositis http://purl.obolibrary.org/obo/HP_0100614
T2 227-245 Phenotype denotes autoimmune disease http://purl.obolibrary.org/obo/HP_0002960
T3 299-313 Phenotype denotes autoimmunities http://purl.obolibrary.org/obo/HP_0002960
T4 633-641 Phenotype denotes myositis http://purl.obolibrary.org/obo/HP_0100614
T5 652-668 Phenotype denotes encephalopathies http://purl.obolibrary.org/obo/HP_0001298
T6 721-733 Phenotype denotes autoimmunity http://purl.obolibrary.org/obo/HP_0002960
T7 905-913 Phenotype denotes myositis http://purl.obolibrary.org/obo/HP_0100614
T8 997-1004 Phenotype denotes Anosmia http://purl.obolibrary.org/obo/HP_0000458
T9 1006-1013 Phenotype denotes ageusia http://purl.obolibrary.org/obo/HP_0041051
T10 1046-1061 Phenotype denotes lymphocytopenia http://purl.obolibrary.org/obo/HP_0001888
T11 1356-1366 Phenotype denotes neuropathy http://purl.obolibrary.org/obo/HP_0009830
T12 1471-1495 Phenotype denotes Elevated Creatine Kinase http://purl.obolibrary.org/obo/HP_0003236
T13 1597-1612 Phenotype denotes muscle weakness http://purl.obolibrary.org/obo/HP_0001324
T14 1733-1745 Phenotype denotes encephalitis http://purl.obolibrary.org/obo/HP_0002383