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PMC:7307149 / 9197-10153 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T54 0-10 Body_part denotes Amino acid http://purl.org/sig/ont/fma/fma82739
T55 103-111 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T56 113-120 Body_part denotes Protein http://purl.org/sig/ont/fma/fma67257
T57 442-449 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T58 533-540 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T59 750-760 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T60 861-872 Body_part denotes amino acids http://purl.org/sig/ont/fma/fma82739

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T55 268-276 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T56 280-288 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T94 48-55 http://purl.obolibrary.org/obo/PR_000018263 denotes peptide
T95 85-90 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T96 173-181 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T97 243-248 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T98 330-335 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T99 728-729 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T100 849-857 http://purl.obolibrary.org/obo/PR_000018263 denotes peptides
T101 952-954 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T102 952-954 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T37 0-10 Chemical denotes Amino acid http://purl.obolibrary.org/obo/CHEBI_33704
T38 6-10 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T39 48-55 Chemical denotes peptide http://purl.obolibrary.org/obo/CHEBI_16670
T40 103-111 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T41 113-120 Chemical denotes Protein http://purl.obolibrary.org/obo/CHEBI_16541
T42 442-449 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T43 533-540 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T44 750-760 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T45 750-755 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T46 756-760 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T47 849-857 Chemical denotes peptides http://purl.obolibrary.org/obo/CHEBI_16670
T48 861-872 Chemical denotes amino acids http://purl.obolibrary.org/obo/CHEBI_33709
T49 861-866 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T50 867-872 Chemical denotes acids http://purl.obolibrary.org/obo/CHEBI_37527
T51 952-954 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
199 211-219 Gene denotes helicase Gene:164045
200 85-102 Species denotes human coronavirus Tax:694448
201 243-248 Species denotes human Tax:9606
202 249-266 Species denotes betacoronaviruses Tax:694002
203 268-278 Species denotes SARS-CoV-2 Tax:2697049
204 280-288 Species denotes SARS-CoV Tax:694009
205 306-314 Species denotes MERS-CoV Tax:1335626
206 330-335 Species denotes human Tax:9606
207 478-489 Species denotes coronavirus Tax:11118

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T58 113-371 Sentence denotes Protein sequence alignments are shown for nucleocapsid (N), membrane (M), and ORF1ab polyprotein (helicase) across all five known human betacoronaviruses (SARS-CoV-2, SARS-CoV, HKU1, OC43, and MERS-CoV) and two known human alphacoronaviruses (229E and NL63).
T59 372-630 Sentence denotes Each row in the three depicted sequence alignments corresponds to the protein sequence from the indicated coronavirus, with the starting coordinate of the viral protein sequence shown at left and position coordinates of the overall alignment displayed above.
T60 631-782 Sentence denotes Blue shading indicates the extent of sequence identity, with the darkest blue shading indicating a 100% match for that amino acid across all sequences.