PMC:7307149 / 24902-25257 JSONTXT

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T157","span":{"begin":0,"end":3},"obj":"Body_part"},{"id":"T158","span":{"begin":76,"end":79},"obj":"Body_part"},{"id":"T159","span":{"begin":322,"end":333},"obj":"Body_part"}],"attributes":[{"id":"A157","pred":"fma_id","subj":"T157","obj":"http://purl.org/sig/ont/fma/fma84079"},{"id":"A158","pred":"fma_id","subj":"T158","obj":"http://purl.org/sig/ont/fma/fma84795"},{"id":"A159","pred":"fma_id","subj":"T159","obj":"http://purl.org/sig/ont/fma/fma82739"}],"text":"MHC class I binding affinity predictions were performed using 145 different HLA alleles for which global allele frequency data were available as described previously (72) (see Table S5) with netMHCpan v4.0 (73) using the ‘-BA’ option to include binding affinity predictions and the ‘-l’ option to specify peptides 8 to 12 amino acids in length (Table S1)."}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T245","span":{"begin":182,"end":184},"obj":"http://purl.obolibrary.org/obo/CLO_0008933"},{"id":"T246","span":{"begin":305,"end":313},"obj":"http://purl.obolibrary.org/obo/PR_000018263"},{"id":"T247","span":{"begin":351,"end":353},"obj":"http://purl.obolibrary.org/obo/CLO_0050050"}],"text":"MHC class I binding affinity predictions were performed using 145 different HLA alleles for which global allele frequency data were available as described previously (72) (see Table S5) with netMHCpan v4.0 (73) using the ‘-BA’ option to include binding affinity predictions and the ‘-l’ option to specify peptides 8 to 12 amino acids in length (Table S1)."}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T150","span":{"begin":182,"end":184},"obj":"Chemical"},{"id":"T151","span":{"begin":305,"end":313},"obj":"Chemical"},{"id":"T152","span":{"begin":322,"end":333},"obj":"Chemical"},{"id":"T153","span":{"begin":322,"end":327},"obj":"Chemical"},{"id":"T154","span":{"begin":328,"end":333},"obj":"Chemical"}],"attributes":[{"id":"A150","pred":"chebi_id","subj":"T150","obj":"http://purl.obolibrary.org/obo/CHEBI_29386"},{"id":"A151","pred":"chebi_id","subj":"T151","obj":"http://purl.obolibrary.org/obo/CHEBI_16670"},{"id":"A152","pred":"chebi_id","subj":"T152","obj":"http://purl.obolibrary.org/obo/CHEBI_33709"},{"id":"A153","pred":"chebi_id","subj":"T153","obj":"http://purl.obolibrary.org/obo/CHEBI_46882"},{"id":"A154","pred":"chebi_id","subj":"T154","obj":"http://purl.obolibrary.org/obo/CHEBI_37527"}],"text":"MHC class I binding affinity predictions were performed using 145 different HLA alleles for which global allele frequency data were available as described previously (72) (see Table S5) with netMHCpan v4.0 (73) using the ‘-BA’ option to include binding affinity predictions and the ‘-l’ option to specify peptides 8 to 12 amino acids in length (Table S1)."}

{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T35","span":{"begin":0,"end":3},"obj":"http://purl.obolibrary.org/obo/GO_0046776"}],"text":"MHC class I binding affinity predictions were performed using 145 different HLA alleles for which global allele frequency data were available as described previously (72) (see Table S5) with netMHCpan v4.0 (73) using the ‘-BA’ option to include binding affinity predictions and the ‘-l’ option to specify peptides 8 to 12 amino acids in length (Table S1)."}

{"project":"LitCovid-sentences","denotations":[{"id":"T132","span":{"begin":0,"end":355},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"MHC class I binding affinity predictions were performed using 145 different HLA alleles for which global allele frequency data were available as described previously (72) (see Table S5) with netMHCpan v4.0 (73) using the ‘-BA’ option to include binding affinity predictions and the ‘-l’ option to specify peptides 8 to 12 amino acids in length (Table S1)."}

{"project":"2_test","denotations":[{"id":"32303592-29653567-65501651","span":{"begin":167,"end":169},"obj":"29653567"},{"id":"32303592-28978689-65501652","span":{"begin":207,"end":209},"obj":"28978689"}],"text":"MHC class I binding affinity predictions were performed using 145 different HLA alleles for which global allele frequency data were available as described previously (72) (see Table S5) with netMHCpan v4.0 (73) using the ‘-BA’ option to include binding affinity predictions and the ‘-l’ option to specify peptides 8 to 12 amino acids in length (Table S1)."}