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PMC:7307149 / 22186-22652 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T149 16-23 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T150 215-222 Body_part denotes Protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T220 50-54 http://purl.obolibrary.org/obo/CLO_0007653 denotes M, E
T221 68-70 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T124 16-23 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T125 215-222 Chemical denotes Protein http://purl.obolibrary.org/obo/CHEBI_16541
T126 441-444 Chemical denotes HMM http://purl.obolibrary.org/obo/CHEBI_24564

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
396 39-45 Gene denotes ORF1ab Gene:43740578
405 71-82 Species denotes coronavirus Tax:11118

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T119 0-466 Sentence denotes For each of the protein classes (i.e., ORF1ab, S, M, E, and N), all 34 coronavirus sequences were aligned using the Clustal Omega v1.2.4 multisequence aligner tool employing the following parameters: sequence type [Protein], output alignment format [clustal_num], dealign [false], mBed-like clustering guide-tree [true], mBed-like clustering iteration [true], number of combined iterations 0, maximum guide tree iterations [-1], and maximum HMM iterations [-1] (68).

2_test

Id Subject Object Predicate Lexical cue
32303592-21988835-65501647 462-464 21988835 denotes 68