PMC:7307149 / 22186-22652
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T149 | 16-23 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T150 | 215-222 | Body_part | denotes | Protein | http://purl.org/sig/ont/fma/fma67257 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T220 | 50-54 | http://purl.obolibrary.org/obo/CLO_0007653 | denotes | M, E |
| T221 | 68-70 | http://purl.obolibrary.org/obo/CLO_0001302 | denotes | 34 |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T124 | 16-23 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T125 | 215-222 | Chemical | denotes | Protein | http://purl.obolibrary.org/obo/CHEBI_16541 |
| T126 | 441-444 | Chemical | denotes | HMM | http://purl.obolibrary.org/obo/CHEBI_24564 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 396 | 39-45 | Gene | denotes | ORF1ab | Gene:43740578 |
| 405 | 71-82 | Species | denotes | coronavirus | Tax:11118 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T119 | 0-466 | Sentence | denotes | For each of the protein classes (i.e., ORF1ab, S, M, E, and N), all 34 coronavirus sequences were aligned using the Clustal Omega v1.2.4 multisequence aligner tool employing the following parameters: sequence type [Protein], output alignment format [clustal_num], dealign [false], mBed-like clustering guide-tree [true], mBed-like clustering iteration [true], number of combined iterations 0, maximum guide tree iterations [-1], and maximum HMM iterations [-1] (68). |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32303592-21988835-65501647 | 462-464 | 21988835 | denotes | 68 |