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PMC:7307149 / 16540-17477 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T109 62-65 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T110 219-222 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T111 232-235 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T112 245-248 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T113 262-265 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T114 507-510 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T115 520-523 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T116 537-540 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T72 23-31 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T73 124-132 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T74 335-343 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T75 403-411 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T76 616-624 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T77 775-783 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T174 34-41 http://purl.obolibrary.org/obo/PR_000018263 denotes peptide
T175 135-142 http://purl.obolibrary.org/obo/PR_000018263 denotes peptide
T176 236-237 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T177 249-250 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T178 414-421 http://purl.obolibrary.org/obo/PR_000018263 denotes peptide
T179 511-512 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T180 524-525 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T181 786-794 http://purl.obolibrary.org/obo/PR_000018263 denotes peptides

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T96 34-41 Chemical denotes peptide http://purl.obolibrary.org/obo/CHEBI_16670
T97 135-142 Chemical denotes peptide http://purl.obolibrary.org/obo/CHEBI_16670
T98 414-421 Chemical denotes peptide http://purl.obolibrary.org/obo/CHEBI_16670
T99 586-593 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T100 786-794 Chemical denotes peptides http://purl.obolibrary.org/obo/CHEBI_16670

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
320 232-237 Gene denotes HLA-A Gene:3105
321 245-250 Gene denotes HLA-B Gene:3106
322 262-267 Gene denotes HLA-C Gene:3107
323 507-512 Gene denotes HLA-A Gene:3105
324 520-525 Gene denotes HLA-B Gene:3106
325 537-542 Gene denotes HLA-C Gene:3107
326 23-33 Species denotes SARS-CoV-2 Tax:2697049
327 124-134 Species denotes SARS-CoV-2 Tax:2697049
328 335-345 Species denotes SARS-CoV-2 Tax:2697049
329 403-413 Species denotes SARS-CoV-2 Tax:2697049
330 616-626 Species denotes SARS-CoV-2 Tax:2697049
331 775-785 Species denotes SARS-CoV-2 Tax:2697049

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T90 0-77 Sentence denotes FIG 6 Distributions of SARS-CoV-2 peptide presentation across HLA haplotypes.
T91 78-355 Sentence denotes The leftmost panels show the distributions of SARS-CoV-2 peptide presentation capacity for haplotypes containing one of three representative HLA alleles (HLA-A*02:02, HLA-B*15:03, and HLA-C*12:03) with the greatest predicted repertoire of epitopes from the SARS-CoV-2 proteome.
T92 356-636 Sentence denotes The rightmost panels show the distributions of SARS-CoV-2 peptide presentation capacity for haplotypes containing one of three representative alleles (HLA-A*25:01, HLA-B*46:01, and HLA-C*01:02) with the lowest predicted levels of epitope presentation from the SARS-CoV-2 proteome.
T93 637-709 Sentence denotes Black and gray bars represent full and partial haplotypes, respectively.
T94 710-937 Sentence denotes Blue and red dashed lines represent the percentages of presented SARS-CoV-2 peptides for the indicated allele itself (blue) and its global population frequency weighted average presentation across its observed haplotypes (red).