PMC:7307149 / 15878-16223
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T102 | 49-52 | Body_part | denotes | HLA | http://purl.org/sig/ont/fma/fma84795 |
| T103 | 62-65 | Body_part | denotes | HLA | http://purl.org/sig/ont/fma/fma84795 |
| T104 | 79-82 | Body_part | denotes | HLA | http://purl.org/sig/ont/fma/fma84795 |
| T105 | 104-107 | Body_part | denotes | HLA | http://purl.org/sig/ont/fma/fma84795 |
| T106 | 117-120 | Body_part | denotes | HLA | http://purl.org/sig/ont/fma/fma84795 |
| T107 | 134-137 | Body_part | denotes | HLA | http://purl.org/sig/ont/fma/fma84795 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T70 | 170-178 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T164 | 53-54 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T165 | 66-67 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | B |
| T166 | 108-109 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T167 | 121-122 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | B |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T92 | 181-188 | Chemical | denotes | epitope | http://purl.obolibrary.org/obo/CHEBI_53000 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 299 | 49-54 | Gene | denotes | HLA-A | Gene:3105 |
| 300 | 62-67 | Gene | denotes | HLA-B | Gene:3106 |
| 301 | 79-84 | Gene | denotes | HLA-C | Gene:3107 |
| 302 | 104-109 | Gene | denotes | HLA-A | Gene:3105 |
| 303 | 117-122 | Gene | denotes | HLA-B | Gene:3106 |
| 304 | 134-139 | Gene | denotes | HLA-C | Gene:3107 |
| 306 | 170-180 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T87 | 0-345 | Sentence | denotes | For six representative alleles with the highest (HLA-A*02:02, HLA-B*15:03, and HLA-C*12:03) and lowest (HLA-A*25:01, HLA-B*46:01, and HLA-C*01:02) predicted capacity for SARS-CoV-2 epitope presentation, these differences remain significant at the haplotype level, albeit with wide variability in presentation among different haplotypes (Fig. 6). |