PMC:7306567 / 9955-10901
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T12 | 415-420 | Body_part | denotes | serum | http://purl.org/sig/ont/fma/fma63083 |
| T13 | 864-869 | Body_part | denotes | serum | http://purl.org/sig/ont/fma/fma63083 |
| T14 | 893-899 | Body_part | denotes | sputum | http://purl.org/sig/ont/fma/fma312401 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T10 | 415-420 | Body_part | denotes | serum | http://purl.obolibrary.org/obo/UBERON_0001977 |
| T11 | 864-869 | Body_part | denotes | serum | http://purl.obolibrary.org/obo/UBERON_0001977 |
| T12 | 893-899 | Body_part | denotes | sputum | http://purl.obolibrary.org/obo/UBERON_0007311 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 98 | 390-392 | Chemical | denotes | GM | MESH:C012990 |
| 99 | 421-423 | Chemical | denotes | GM | MESH:C012990 |
| 100 | 741-743 | Chemical | denotes | GM | MESH:C012990 |
| 101 | 870-872 | Chemical | denotes | GM | MESH:C012990 |
| 102 | 443-454 | Disease | denotes | neutropenic | MESH:D009503 |
| 103 | 666-692 | Disease | denotes | invasive tracheobronchitis | MESH:D009361 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T54 | 33-42 | Disease | denotes | influenza | http://purl.obolibrary.org/obo/MONDO_0005812 |
| T55 | 297-306 | Disease | denotes | influenza | http://purl.obolibrary.org/obo/MONDO_0005812 |
| T56 | 675-692 | Disease | denotes | tracheobronchitis | http://purl.obolibrary.org/obo/MONDO_0021925 |
| T57 | 938-945 | Disease | denotes | sterile | http://purl.obolibrary.org/obo/MONDO_0005047 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T67 | 0-1 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T46 | 386-389 | Chemical | denotes | BAL | http://purl.obolibrary.org/obo/CHEBI_64198 |
| T47 | 390-392 | Chemical | denotes | GM | http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680 |
| T49 | 421-423 | Chemical | denotes | GM | http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680 |
| T51 | 514-517 | Chemical | denotes | BAL | http://purl.obolibrary.org/obo/CHEBI_64198 |
| T52 | 737-740 | Chemical | denotes | BAL | http://purl.obolibrary.org/obo/CHEBI_64198 |
| T53 | 741-743 | Chemical | denotes | GM | http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680 |
| T55 | 806-809 | Chemical | denotes | BAL | http://purl.obolibrary.org/obo/CHEBI_64198 |
| T56 | 870-872 | Chemical | denotes | GM | http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T11 | 504-510 | http://purl.obolibrary.org/obo/GO_0040007 | denotes | growth |
LitCovid-PD-GlycoEpitope
| Id | Subject | Object | Predicate | Lexical cue | glyco_epitope_db_id |
|---|---|---|---|---|---|
| T4 | 390-392 | GlycoEpitope | denotes | GM | http://www.glycoepitope.jp/epitopes/EP0510 |
| T5 | 421-423 | GlycoEpitope | denotes | GM | http://www.glycoepitope.jp/epitopes/EP0510 |
| T6 | 741-743 | GlycoEpitope | denotes | GM | http://www.glycoepitope.jp/epitopes/EP0510 |
| T7 | 870-872 | GlycoEpitope | denotes | GM | http://www.glycoepitope.jp/epitopes/EP0510 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T65 | 0-150 | Sentence | denotes | A retrospective Belgian study of influenza patients admitted to ICU between September 2009 and March 2011 showed that 9 of 40 (23%) patients had IAPA. |
| T66 | 151-272 | Sentence | denotes | Four cases (44%) were proven despite not being immunocompromised according to the EORTC/MSGERC consensus definitions [7]. |
| T67 | 273-354 | Sentence | denotes | The median time between influenza diagnosis and IAPA was 2 days (range 0–4 days). |
| T68 | 355-455 | Sentence | denotes | All IAPA patients had positive BAL GM, and 78% had positive serum GM, despite not being neutropenic. |
| T69 | 456-697 | Sentence | denotes | Eighty-nine percent of patients had Aspergillus growth in BAL culture (almost exclusively Aspergillus fumigatus), and 55% of patients had endobronchial lesions observed during bronchoscopy, possibly indicating invasive tracheobronchitis [7]. |
| T70 | 698-805 | Sentence | denotes | Similar performance characteristics of BAL GM and culture were reported in two other cohort studies [8, 9]. |
| T71 | 806-946 | Sentence | denotes | BAL sampling is thus an important diagnostic procedure as serum GM can be negative and sputum/tracheal aspirate cultures can remain sterile. |
LitCovid-PMC-OGER-BB
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T70 | 246-255 | SO:0000993 | denotes | consensus |
| T71 | 415-420 | UBERON:0001977 | denotes | serum |
| T72 | 492-503 | NCBITaxon:5052 | denotes | Aspergillus |
| T73 | 546-567 | NCBITaxon:746128 | denotes | Aspergillus fumigatus |
| T74 | 594-607 | UBERON:0001852 | denotes | endobronchial |
| T75 | 675-692 | UBERON:0007196 | denotes | tracheobronchitis |
| T76 | 864-869 | UBERON:0001977 | denotes | serum |
| T77 | 893-899 | UBERON:0007311 | denotes | sputum |
| T78 | 900-908 | UBERON:0003126 | denotes | tracheal |
| T73706 | 246-255 | SO:0000993 | denotes | consensus |
| T23018 | 415-420 | UBERON:0001977 | denotes | serum |
| T97663 | 492-503 | NCBITaxon:5052 | denotes | Aspergillus |
| T79006 | 546-567 | NCBITaxon:746128 | denotes | Aspergillus fumigatus |
| T56081 | 594-607 | UBERON:0001852 | denotes | endobronchial |
| T28200 | 675-692 | UBERON:0007196 | denotes | tracheobronchitis |
| T83389 | 864-869 | UBERON:0001977 | denotes | serum |
| T54848 | 893-899 | UBERON:0007311 | denotes | sputum |
| T80836 | 900-908 | UBERON:0003126 | denotes | tracheal |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32572532-22895826-47963419 | 269-270 | 22895826 | denotes | 7 |
| 32572532-22895826-47963420 | 694-695 | 22895826 | denotes | 7 |
| 32572532-28387526-47963421 | 799-800 | 28387526 | denotes | 8 |
| 32572532-30076119-47963422 | 802-803 | 30076119 | denotes | 9 |
| T80169 | 269-270 | 22895826 | denotes | 7 |
| T27000 | 694-695 | 22895826 | denotes | 7 |
| T8508 | 799-800 | 28387526 | denotes | 8 |
| T93633 | 802-803 | 30076119 | denotes | 9 |