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PMC:7306567 / 6623-8920 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
79 1668-1681 Chemical denotes galactomannan MESH:C012990
80 1683-1685 Chemical denotes GM MESH:C012990
81 2057-2068 Chemical denotes oseltamivir MESH:D053139
82 2072-2081 Chemical denotes zanamivir MESH:D053243
83 210-219 Disease denotes mortality MESH:D003643
84 720-729 Disease denotes mortality MESH:D003643
85 2274-2278 Disease denotes COPD MESH:D029424

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T38 106-115 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T39 245-254 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T40 385-409 Disease denotes Streptococcus pneumoniae http://purl.obolibrary.org/obo/MONDO_0005972
T41 502-511 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T42 553-562 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T43 792-801 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T44 932-941 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T45 1028-1037 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T46 1044-1053 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T47 1093-1102 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T48 1915-1924 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T49 2011-2020 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T50 2115-2124 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T51 2274-2278 Disease denotes COPD http://purl.obolibrary.org/obo/MONDO_0005002

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T44 356-358 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T45 450-451 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T46 942-943 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T47 1038-1039 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T48 1054-1055 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T49 1056-1063 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T50 1166-1168 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T51 1408-1410 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T52 1639-1644 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T53 1779-1780 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T54 2083-2085 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T32 596-599 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T34 1528-1543 Chemical denotes corticosteroids http://purl.obolibrary.org/obo/CHEBI_50858
T35 1668-1681 Chemical denotes galactomannan http://purl.obolibrary.org/obo/CHEBI_27680
T36 1683-1685 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T38 2021-2030 Chemical denotes antiviral http://purl.obolibrary.org/obo/CHEBI_22587
T39 2057-2068 Chemical denotes oseltamivir http://purl.obolibrary.org/obo/CHEBI_7798
T40 2072-2081 Chemical denotes zanamivir http://purl.obolibrary.org/obo/CHEBI_50663

LitCovid-PD-GlycoEpitope

Id Subject Object Predicate Lexical cue glyco_epitope_db_id
T2 1668-1681 GlycoEpitope denotes galactomannan http://www.glycoepitope.jp/epitopes/EP0510
T3 1683-1685 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T16 399-409 Phenotype denotes pneumoniae http://purl.obolibrary.org/obo/HP_0002090
T17 596-599 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T18 2274-2278 Phenotype denotes COPD http://purl.obolibrary.org/obo/HP_0006510

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T46 0-205 Sentence denotes Although figures vary depending on geographic region, season and vaccination rates, approximately 0.1% of influenza patients require hospital admission with 5–10% of these requiring ICU admission [13, 14].
T47 206-306 Sentence denotes The mortality in patients admitted for influenza is 4% and 20–25% for those admitted to ICU [14–16].
T48 307-440 Sentence denotes Bacterial superinfection is common, affecting 10–35% of cases, typically with Streptococcus pneumoniae or Staphylococcus aureus [16].
T49 441-683 Sentence denotes However, a recent Dutch–Belgian multicenter study over seven influenza seasons in seven institutes demonstrated influenza as an independent risk factor of IPA (adjusted odds ratio 5.19, 95% confidence interval (CI) 2.63–10.26, p < 0.001) [9].
T50 684-882 Sentence denotes Results also showed that the 90-day mortality rate for ICU patients with IAPA was almost double that of ICU influenza patients without IAPA (51% vs. 28%, adjusted odds ratio 1.87, 95% CI 1.05–3.32).
T51 883-1068 Sentence denotes IAPA was initially thought to be associated with influenza A/H1N1pdm09 only [7, 17], but it became clear that IAPA is also associated with other influenza A and influenza B viruses [9].
T52 1069-1170 Sentence denotes The median time between influenza diagnosis and IAPA was short, often in the first 5 days [7, 8, 18].
T53 1171-1412 Sentence denotes Studies have shown considerable variation in rates of IAPA in different countries, with high rates in the Netherlands, Belgium and Taiwan, but lower rates in other countries [19], and in some we do not know the incidence (e.g., USA) [20–22].
T54 1413-1733 Sentence denotes Potential reasons for these regional differences are related to the underlying conditions, concomitant exposure to corticosteroids, environmental factors, including exposure to Aspergillus, use of non-culture-based diagnostic tests for Aspergillus (e.g., galactomannan (GM)) and differences in awareness of IAPA [23–25].
T55 1734-1832 Sentence denotes Autopsy rates are very low, which results in a considerable underdiagnosis in many countries [26].
T56 1833-2087 Sentence denotes Other factors that might contribute to regional differences in IAPA rates include influenza vaccination rates, with different policies in different countries, and differences in influenza antiviral treatment strategies with oseltamivir or zanamivir [27].
T57 2088-2297 Sentence denotes Annual vaccination reduces influenza-associated complications (hospitalization, ICU admission, severity of illness, superinfection) and improves the outcome in transplant recipients and COPD patients [28, 29].

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T44 385-409 NCBITaxon:1313 denotes Streptococcus pneumoniae
T45 413-434 NCBITaxon:1280 denotes Staphylococcus aureus
T46 1028-1037 NCBITaxon:7719 denotes influenza
T47 1044-1053 NCBITaxon:7719 denotes influenza
T48 1056-1063 NCBITaxon:10239 denotes viruses
T49 1528-1543 CHEBI:50858;CHEBI:50858 denotes corticosteroids
T50 1649-1660 NCBITaxon:5052 denotes Aspergillus
T51 1668-1681 CHEBI:27680;CHEBI:27680 denotes galactomannan
T52 2057-2068 CHEBI:7798;CHEBI:7798 denotes oseltamivir
T53 2072-2081 CHEBI:50663;CHEBI:50663 denotes zanamivir
T23383 385-409 NCBITaxon:1313 denotes Streptococcus pneumoniae
T37236 413-434 NCBITaxon:1280 denotes Staphylococcus aureus
T36235 1028-1037 NCBITaxon:7719 denotes influenza
T90866 1044-1053 NCBITaxon:7719 denotes influenza
T82971 1056-1063 NCBITaxon:10239 denotes viruses
T40669 1528-1543 CHEBI:50858;CHEBI:50858 denotes corticosteroids
T73349 1649-1660 NCBITaxon:5052 denotes Aspergillus
T73289 1668-1681 CHEBI:27680;CHEBI:27680 denotes galactomannan
T34533 2057-2068 CHEBI:7798;CHEBI:7798 denotes oseltamivir
T94297 2072-2081 CHEBI:50663;CHEBI:50663 denotes zanamivir

2_test

Id Subject Object Predicate Lexical cue
32572532-31324202-47963401 197-199 31324202 denotes 13
32572532-30481669-47963402 299-301 30481669 denotes 14
32572532-31046842-47963402 299-301 31046842 denotes 14
32572532-31046842-47963403 436-438 31046842 denotes 16
32572532-30076119-47963404 680-681 30076119 denotes 9
32572532-22895826-47963405 960-961 22895826 denotes 7
32572532-22152763-47963406 963-965 22152763 denotes 17
32572532-30076119-47963407 1065-1066 30076119 denotes 9
32572532-22895826-47963408 1160-1161 22895826 denotes 7
32572532-28387526-47963409 1163-1164 28387526 denotes 8
32572532-28647219-47963410 1166-1168 28647219 denotes 18
32572532-32392330-47963411 1346-1348 32392330 denotes 19
32572532-31894248-47963412 1405-1407 31894248 denotes 20
32572532-30299367-47963412 1405-1407 30299367 denotes 20
32572532-19935413-47963412 1405-1407 19935413 denotes 20
32572532-31077266-47963413 1726-1728 31077266 denotes 23
32572532-32160910-47963413 1726-1728 32160910 denotes 23
32572532-31905234-47963413 1726-1728 31905234 denotes 23
32572532-31177621-47963414 1828-1830 31177621 denotes 26
32572532-31169040-47963415 2083-2085 31169040 denotes 27
32572532-29635437-47963416 2289-2291 29635437 denotes 28
32572532-30616737-47963417 2293-2295 30616737 denotes 29
T11106 197-199 31324202 denotes 13
T6909 299-301 30481669 denotes 14
T62848 299-301 31046842 denotes 14
T5649 436-438 31046842 denotes 16
T57717 680-681 30076119 denotes 9
T3279 960-961 22895826 denotes 7
T23163 963-965 22152763 denotes 17
T40850 1065-1066 30076119 denotes 9
T55810 1160-1161 22895826 denotes 7
T67977 1163-1164 28387526 denotes 8
T83444 1166-1168 28647219 denotes 18
T30057 1346-1348 32392330 denotes 19
T55659 1405-1407 31894248 denotes 20
T53000 1405-1407 30299367 denotes 20
T93641 1405-1407 19935413 denotes 20
T2230 1726-1728 31077266 denotes 23
T99335 1726-1728 32160910 denotes 23
T33839 1726-1728 31905234 denotes 23
T31495 1828-1830 31177621 denotes 26
T29746 2083-2085 31169040 denotes 27
T9365 2289-2291 29635437 denotes 28
T84093 2293-2295 30616737 denotes 29