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PMC:7306567 / 6581-8920 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
79 1710-1723 Chemical denotes galactomannan MESH:C012990
80 1725-1727 Chemical denotes GM MESH:C012990
81 2099-2110 Chemical denotes oseltamivir MESH:D053139
82 2114-2123 Chemical denotes zanamivir MESH:D053243
83 252-261 Disease denotes mortality MESH:D003643
84 762-771 Disease denotes mortality MESH:D003643
85 2316-2320 Disease denotes COPD MESH:D029424

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T37 23-32 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T38 148-157 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T39 287-296 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T40 427-451 Disease denotes Streptococcus pneumoniae http://purl.obolibrary.org/obo/MONDO_0005972
T41 544-553 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T42 595-604 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T43 834-843 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T44 974-983 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T45 1070-1079 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T46 1086-1095 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T47 1135-1144 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T48 1957-1966 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T49 2053-2062 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T50 2157-2166 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T51 2316-2320 Disease denotes COPD http://purl.obolibrary.org/obo/MONDO_0005002

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T44 398-400 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T45 492-493 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T46 984-985 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T47 1080-1081 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T48 1096-1097 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T49 1098-1105 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T50 1208-1210 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T51 1450-1452 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T52 1681-1686 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T53 1821-1822 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T54 2125-2127 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T32 638-641 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T34 1570-1585 Chemical denotes corticosteroids http://purl.obolibrary.org/obo/CHEBI_50858
T35 1710-1723 Chemical denotes galactomannan http://purl.obolibrary.org/obo/CHEBI_27680
T36 1725-1727 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T38 2063-2072 Chemical denotes antiviral http://purl.obolibrary.org/obo/CHEBI_22587
T39 2099-2110 Chemical denotes oseltamivir http://purl.obolibrary.org/obo/CHEBI_7798
T40 2114-2123 Chemical denotes zanamivir http://purl.obolibrary.org/obo/CHEBI_50663

LitCovid-PD-GlycoEpitope

Id Subject Object Predicate Lexical cue glyco_epitope_db_id
T2 1710-1723 GlycoEpitope denotes galactomannan http://www.glycoepitope.jp/epitopes/EP0510
T3 1725-1727 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T16 441-451 Phenotype denotes pneumoniae http://purl.obolibrary.org/obo/HP_0002090
T17 638-641 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T18 2316-2320 Phenotype denotes COPD http://purl.obolibrary.org/obo/HP_0006510

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T45 0-41 Sentence denotes Global epidemiology of influenza and IAPA
T46 42-247 Sentence denotes Although figures vary depending on geographic region, season and vaccination rates, approximately 0.1% of influenza patients require hospital admission with 5–10% of these requiring ICU admission [13, 14].
T47 248-348 Sentence denotes The mortality in patients admitted for influenza is 4% and 20–25% for those admitted to ICU [14–16].
T48 349-482 Sentence denotes Bacterial superinfection is common, affecting 10–35% of cases, typically with Streptococcus pneumoniae or Staphylococcus aureus [16].
T49 483-725 Sentence denotes However, a recent Dutch–Belgian multicenter study over seven influenza seasons in seven institutes demonstrated influenza as an independent risk factor of IPA (adjusted odds ratio 5.19, 95% confidence interval (CI) 2.63–10.26, p < 0.001) [9].
T50 726-924 Sentence denotes Results also showed that the 90-day mortality rate for ICU patients with IAPA was almost double that of ICU influenza patients without IAPA (51% vs. 28%, adjusted odds ratio 1.87, 95% CI 1.05–3.32).
T51 925-1110 Sentence denotes IAPA was initially thought to be associated with influenza A/H1N1pdm09 only [7, 17], but it became clear that IAPA is also associated with other influenza A and influenza B viruses [9].
T52 1111-1212 Sentence denotes The median time between influenza diagnosis and IAPA was short, often in the first 5 days [7, 8, 18].
T53 1213-1454 Sentence denotes Studies have shown considerable variation in rates of IAPA in different countries, with high rates in the Netherlands, Belgium and Taiwan, but lower rates in other countries [19], and in some we do not know the incidence (e.g., USA) [20–22].
T54 1455-1775 Sentence denotes Potential reasons for these regional differences are related to the underlying conditions, concomitant exposure to corticosteroids, environmental factors, including exposure to Aspergillus, use of non-culture-based diagnostic tests for Aspergillus (e.g., galactomannan (GM)) and differences in awareness of IAPA [23–25].
T55 1776-1874 Sentence denotes Autopsy rates are very low, which results in a considerable underdiagnosis in many countries [26].
T56 1875-2129 Sentence denotes Other factors that might contribute to regional differences in IAPA rates include influenza vaccination rates, with different policies in different countries, and differences in influenza antiviral treatment strategies with oseltamivir or zanamivir [27].
T57 2130-2339 Sentence denotes Annual vaccination reduces influenza-associated complications (hospitalization, ICU admission, severity of illness, superinfection) and improves the outcome in transplant recipients and COPD patients [28, 29].

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T44 427-451 NCBITaxon:1313 denotes Streptococcus pneumoniae
T45 455-476 NCBITaxon:1280 denotes Staphylococcus aureus
T46 1070-1079 NCBITaxon:7719 denotes influenza
T47 1086-1095 NCBITaxon:7719 denotes influenza
T48 1098-1105 NCBITaxon:10239 denotes viruses
T49 1570-1585 CHEBI:50858;CHEBI:50858 denotes corticosteroids
T50 1691-1702 NCBITaxon:5052 denotes Aspergillus
T51 1710-1723 CHEBI:27680;CHEBI:27680 denotes galactomannan
T52 2099-2110 CHEBI:7798;CHEBI:7798 denotes oseltamivir
T53 2114-2123 CHEBI:50663;CHEBI:50663 denotes zanamivir
T23383 427-451 NCBITaxon:1313 denotes Streptococcus pneumoniae
T37236 455-476 NCBITaxon:1280 denotes Staphylococcus aureus
T36235 1070-1079 NCBITaxon:7719 denotes influenza
T90866 1086-1095 NCBITaxon:7719 denotes influenza
T82971 1098-1105 NCBITaxon:10239 denotes viruses
T40669 1570-1585 CHEBI:50858;CHEBI:50858 denotes corticosteroids
T73349 1691-1702 NCBITaxon:5052 denotes Aspergillus
T73289 1710-1723 CHEBI:27680;CHEBI:27680 denotes galactomannan
T34533 2099-2110 CHEBI:7798;CHEBI:7798 denotes oseltamivir
T94297 2114-2123 CHEBI:50663;CHEBI:50663 denotes zanamivir

2_test

Id Subject Object Predicate Lexical cue
32572532-31324202-47963401 239-241 31324202 denotes 13
32572532-30481669-47963402 341-343 30481669 denotes 14
32572532-31046842-47963402 341-343 31046842 denotes 14
32572532-31046842-47963403 478-480 31046842 denotes 16
32572532-30076119-47963404 722-723 30076119 denotes 9
32572532-22895826-47963405 1002-1003 22895826 denotes 7
32572532-22152763-47963406 1005-1007 22152763 denotes 17
32572532-30076119-47963407 1107-1108 30076119 denotes 9
32572532-22895826-47963408 1202-1203 22895826 denotes 7
32572532-28387526-47963409 1205-1206 28387526 denotes 8
32572532-28647219-47963410 1208-1210 28647219 denotes 18
32572532-32392330-47963411 1388-1390 32392330 denotes 19
32572532-31894248-47963412 1447-1449 31894248 denotes 20
32572532-30299367-47963412 1447-1449 30299367 denotes 20
32572532-19935413-47963412 1447-1449 19935413 denotes 20
32572532-31077266-47963413 1768-1770 31077266 denotes 23
32572532-32160910-47963413 1768-1770 32160910 denotes 23
32572532-31905234-47963413 1768-1770 31905234 denotes 23
32572532-31177621-47963414 1870-1872 31177621 denotes 26
32572532-31169040-47963415 2125-2127 31169040 denotes 27
32572532-29635437-47963416 2331-2333 29635437 denotes 28
32572532-30616737-47963417 2335-2337 30616737 denotes 29
T11106 239-241 31324202 denotes 13
T6909 341-343 30481669 denotes 14
T62848 341-343 31046842 denotes 14
T5649 478-480 31046842 denotes 16
T57717 722-723 30076119 denotes 9
T3279 1002-1003 22895826 denotes 7
T23163 1005-1007 22152763 denotes 17
T40850 1107-1108 30076119 denotes 9
T55810 1202-1203 22895826 denotes 7
T67977 1205-1206 28387526 denotes 8
T83444 1208-1210 28647219 denotes 18
T30057 1388-1390 32392330 denotes 19
T55659 1447-1449 31894248 denotes 20
T53000 1447-1449 30299367 denotes 20
T93641 1447-1449 19935413 denotes 20
T2230 1768-1770 31077266 denotes 23
T99335 1768-1770 32160910 denotes 23
T33839 1768-1770 31905234 denotes 23
T31495 1870-1872 31177621 denotes 26
T29746 2125-2127 31169040 denotes 27
T9365 2331-2333 29635437 denotes 28
T84093 2335-2337 30616737 denotes 29