PMC:7306567 / 25281-25784 JSONTXT

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T38","span":{"begin":488,"end":494},"obj":"Body_part"}],"attributes":[{"id":"A38","pred":"fma_id","subj":"T38","obj":"http://purl.org/sig/ont/fma/fma9637"}],"text":"A BAL GM index cutoff of ≥ 1.0 is recommended as this cutoff value ensures high specificity, without decreasing sensitivity significantly, which is also in line with other definitions and recommendations [10, 57]. Aspergillus PCR is not recommended as a primary diagnostic tool because of concerns about its reliability and positive predictive value for the diagnosis of IPA. However, Aspergillus PCR is recommended in the proven category because it enables Aspergillus identification in tissue samples."}

{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T34","span":{"begin":488,"end":494},"obj":"Body_part"}],"attributes":[{"id":"A34","pred":"uberon_id","subj":"T34","obj":"http://purl.obolibrary.org/obo/UBERON_0000479"}],"text":"A BAL GM index cutoff of ≥ 1.0 is recommended as this cutoff value ensures high specificity, without decreasing sensitivity significantly, which is also in line with other definitions and recommendations [10, 57]. Aspergillus PCR is not recommended as a primary diagnostic tool because of concerns about its reliability and positive predictive value for the diagnosis of IPA. However, Aspergillus PCR is recommended in the proven category because it enables Aspergillus identification in tissue samples."}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T168","span":{"begin":0,"end":1},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T169","span":{"begin":252,"end":253},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"}],"text":"A BAL GM index cutoff of ≥ 1.0 is recommended as this cutoff value ensures high specificity, without decreasing sensitivity significantly, which is also in line with other definitions and recommendations [10, 57]. Aspergillus PCR is not recommended as a primary diagnostic tool because of concerns about its reliability and positive predictive value for the diagnosis of IPA. However, Aspergillus PCR is recommended in the proven category because it enables Aspergillus identification in tissue samples."}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T171","span":{"begin":2,"end":5},"obj":"Chemical"},{"id":"T172","span":{"begin":6,"end":8},"obj":"Chemical"},{"id":"T174","span":{"begin":371,"end":374},"obj":"Chemical"}],"attributes":[{"id":"A171","pred":"chebi_id","subj":"T171","obj":"http://purl.obolibrary.org/obo/CHEBI_64198"},{"id":"A172","pred":"chebi_id","subj":"T172","obj":"http://purl.obolibrary.org/obo/CHEBI_74120"},{"id":"A173","pred":"chebi_id","subj":"T172","obj":"http://purl.obolibrary.org/obo/CHEBI_27680"},{"id":"A174","pred":"chebi_id","subj":"T174","obj":"http://purl.obolibrary.org/obo/CHEBI_17824"},{"id":"A175","pred":"chebi_id","subj":"T174","obj":"http://purl.obolibrary.org/obo/CHEBI_30802"}],"text":"A BAL GM index cutoff of ≥ 1.0 is recommended as this cutoff value ensures high specificity, without decreasing sensitivity significantly, which is also in line with other definitions and recommendations [10, 57]. Aspergillus PCR is not recommended as a primary diagnostic tool because of concerns about its reliability and positive predictive value for the diagnosis of IPA. However, Aspergillus PCR is recommended in the proven category because it enables Aspergillus identification in tissue samples."}

{"project":"LitCovid-PD-GlycoEpitope","denotations":[{"id":"T22","span":{"begin":6,"end":8},"obj":"GlycoEpitope"}],"attributes":[{"id":"A22","pred":"glyco_epitope_db_id","subj":"T22","obj":"http://www.glycoepitope.jp/epitopes/EP0510"}],"text":"A BAL GM index cutoff of ≥ 1.0 is recommended as this cutoff value ensures high specificity, without decreasing sensitivity significantly, which is also in line with other definitions and recommendations [10, 57]. Aspergillus PCR is not recommended as a primary diagnostic tool because of concerns about its reliability and positive predictive value for the diagnosis of IPA. However, Aspergillus PCR is recommended in the proven category because it enables Aspergillus identification in tissue samples."}

{"project":"LitCovid-PD-HP","denotations":[{"id":"T34","span":{"begin":371,"end":374},"obj":"Phenotype"}],"attributes":[{"id":"A34","pred":"hp_id","subj":"T34","obj":"http://purl.obolibrary.org/obo/HP_0020103"}],"text":"A BAL GM index cutoff of ≥ 1.0 is recommended as this cutoff value ensures high specificity, without decreasing sensitivity significantly, which is also in line with other definitions and recommendations [10, 57]. Aspergillus PCR is not recommended as a primary diagnostic tool because of concerns about its reliability and positive predictive value for the diagnosis of IPA. However, Aspergillus PCR is recommended in the proven category because it enables Aspergillus identification in tissue samples."}

{"project":"LitCovid-sentences","denotations":[{"id":"T189","span":{"begin":0,"end":213},"obj":"Sentence"},{"id":"T190","span":{"begin":214,"end":375},"obj":"Sentence"},{"id":"T191","span":{"begin":376,"end":503},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"A BAL GM index cutoff of ≥ 1.0 is recommended as this cutoff value ensures high specificity, without decreasing sensitivity significantly, which is also in line with other definitions and recommendations [10, 57]. Aspergillus PCR is not recommended as a primary diagnostic tool because of concerns about its reliability and positive predictive value for the diagnosis of IPA. However, Aspergillus PCR is recommended in the proven category because it enables Aspergillus identification in tissue samples."}

{"project":"LitCovid-PMC-OGER-BB","denotations":[{"id":"T232","span":{"begin":385,"end":396},"obj":"NCBITaxon:5052"},{"id":"T233","span":{"begin":458,"end":469},"obj":"NCBITaxon:5052"},{"id":"T234","span":{"begin":488,"end":494},"obj":"UBERON:0000479"}],"text":"A BAL GM index cutoff of ≥ 1.0 is recommended as this cutoff value ensures high specificity, without decreasing sensitivity significantly, which is also in line with other definitions and recommendations [10, 57]. Aspergillus PCR is not recommended as a primary diagnostic tool because of concerns about its reliability and positive predictive value for the diagnosis of IPA. However, Aspergillus PCR is recommended in the proven category because it enables Aspergillus identification in tissue samples."}

{"project":"2_test","denotations":[{"id":"32572532-31469325-47963451","span":{"begin":209,"end":211},"obj":"31469325"},{"id":"T82735","span":{"begin":209,"end":211},"obj":"31469325"}],"text":"A BAL GM index cutoff of ≥ 1.0 is recommended as this cutoff value ensures high specificity, without decreasing sensitivity significantly, which is also in line with other definitions and recommendations [10, 57]. Aspergillus PCR is not recommended as a primary diagnostic tool because of concerns about its reliability and positive predictive value for the diagnosis of IPA. However, Aspergillus PCR is recommended in the proven category because it enables Aspergillus identification in tissue samples."}