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PMC:7306567 / 2305-4276 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T3 159-169 Body_part denotes neutrophil http://purl.org/sig/ont/fma/fma62860
T4 185-189 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T5 479-483 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
53 529-554 Disease denotes graft-versus-host disease MESH:D006086
46 723-732 Chemical denotes ibrutinib MESH:C551803
47 13-45 Disease denotes Invasive pulmonary aspergillosis MESH:D055744
48 126-147 Disease denotes prolonged neutropenia MESH:D009503
49 159-197 Disease denotes neutrophil disorders or T cell defects MESH:C563515
50 351-373 Disease denotes invasive aspergillosis MESH:D055744
51 431-445 Disease denotes acute leukemia MESH:D015470
52 447-449 Disease denotes AL MESH:D009101
58 1050-1073 Disease denotes pulmonary aspergillosis MESH:D055732
59 1150-1156 Disease denotes Cancer MESH:D009369
60 1165-1172 Disease denotes Mycosis MESH:D015821
61 1512-1535 Disease denotes invasive fungal disease MESH:D000072742

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T21 32-45 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T22 136-147 Disease denotes neutropenia http://purl.obolibrary.org/obo/MONDO_0001475
T23 351-373 Disease denotes invasive aspergillosis http://purl.obolibrary.org/obo/MONDO_0000240
T24 360-373 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T25 375-377 Disease denotes IA http://purl.obolibrary.org/obo/MONDO_0000240
T26 431-445 Disease denotes acute leukemia http://purl.obolibrary.org/obo/MONDO_0010643
T27 437-445 Disease denotes leukemia http://purl.obolibrary.org/obo/MONDO_0005059
T28 447-449 Disease denotes AL http://purl.obolibrary.org/obo/MONDO_0010643
T29 529-554 Disease denotes graft-versus-host disease http://purl.obolibrary.org/obo/MONDO_0013730
T30 792-801 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T31 987-996 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T32 1029-1038 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T33 1060-1073 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T34 1150-1156 Disease denotes Cancer http://purl.obolibrary.org/obo/MONDO_0004992
T35 1165-1172 Disease denotes Mycosis http://purl.obolibrary.org/obo/MONDO_0002041

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T15 55-56 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T16 183-189 http://purl.obolibrary.org/obo/CL_0000084 denotes T cell
T17 479-483 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T18 734-738 http://purl.obolibrary.org/obo/CLO_0053799 denotes 4, 5
T19 777-778 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T20 810-813 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T21 1107-1119 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T22 1259-1260 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T23 1540-1541 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T24 1745-1747 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T4 47-50 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T6 375-377 Chemical denotes IA http://purl.obolibrary.org/obo/CHEBI_74062
T7 447-449 Chemical denotes AL http://purl.obolibrary.org/obo/CHEBI_73770
T8 565-575 Chemical denotes antifungal http://purl.obolibrary.org/obo/CHEBI_35718
T9 723-732 Chemical denotes ibrutinib http://purl.obolibrary.org/obo/CHEBI_76612
T10 806-809 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T12 940-943 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T14 1324-1327 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T16 1716-1719 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 1822-1834 http://purl.obolibrary.org/obo/GO_0009405 denotes pathogenesis

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T6 13-45 Phenotype denotes Invasive pulmonary aspergillosis http://purl.obolibrary.org/obo/HP_0020103
T7 47-50 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T8 136-147 Phenotype denotes neutropenia http://purl.obolibrary.org/obo/HP_0001875
T9 431-445 Phenotype denotes acute leukemia http://purl.obolibrary.org/obo/HP_0002488
T10 447-449 Phenotype denotes AL http://purl.obolibrary.org/obo/HP_0002488
T11 806-809 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T12 940-943 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T13 1150-1156 Phenotype denotes Cancer http://purl.obolibrary.org/obo/HP_0002664
T14 1324-1327 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103
T15 1716-1719 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T19 0-12 Sentence denotes Introduction
T20 13-318 Sentence denotes Invasive pulmonary aspergillosis (IPA) is a well-recognized disease affecting immunocompromised individuals with prolonged neutropenia, inherited neutrophil disorders or T cell defects, with the risk depending on the patients’ underlying disease and the type and duration of immunosuppressive therapy [1].
T21 319-620 Sentence denotes Patients at the highest risk of invasive aspergillosis (IA) include those undergoing intensive chemotherapy for acute leukemia (AL) or recipients of allogeneic cell transplantation (alloHCT) who develop severe graft-versus-host disease, for whom antifungal prophylaxis is currently recommended [2, 3].
T22 621-740 Sentence denotes With changing treatment modalities, new risk groups continue to emerge, such as patients treated with ibrutinib [4, 5].
T23 741-1003 Sentence denotes Although over the past four decades a link between influenza and IPA has been noted in single cases [6], recent cohort studies provide new insights into the epidemiology and clinical presentation of IPA in intensive care unit (ICU) patients with influenza [7–9].
T24 1004-1370 Sentence denotes Patients presenting with influenza-associated pulmonary aspergillosis (IAPA) may have classic European Organization for Research and Treatment of Cancer (EORTC)/Mycosis Study Group Education and Research Consortium (MSGERC)-defined host factors [10], but a notable proportion of patients was deemed to be at low risk of IPA, including previously healthy individuals.
T25 1371-1536 Sentence denotes In addition, the clinical and radiological presentation was often atypical with radiological features that were not considered suggestive of invasive fungal disease.
T26 1537-1749 Sentence denotes As a consequence, we cannot classify these patients according to existing consensus definitions, i.e., the EORTC/MSGERC definitions and the AspICU algorithm for classification of IPA patients in the ICU [10, 11].
T27 1750-1971 Sentence denotes We therefore set out to discuss current insights into the epidemiology, pathogenesis, diagnosis and management of IAPA and to propose case definitions that can facilitate homogeneity and comparability in clinical studies.

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T29 22-31 UBERON:0002048 denotes pulmonary
T30 109-120 NCBITaxon:1 denotes individuals
T31 159-169 CL:0000775 denotes neutrophil
T32 183-189 CL:0000084 denotes T cell
T33 288-305 CHEBI:35705;CHEBI:35705 denotes immunosuppressive
T34 723-732 CHEBI:76612;CHEBI:76612 denotes ibrutinib
T35 947-966 UBERON:0007221 denotes intensive care unit
T36 1050-1059 UBERON:0002048 denotes pulmonary
T37 1358-1369 NCBITaxon:1 denotes individuals
T38 1611-1620 SO:0000993 denotes consensus
T81322 22-31 UBERON:0002048 denotes pulmonary
T51311 109-120 NCBITaxon:1 denotes individuals
T81106 159-169 CL:0000775 denotes neutrophil
T17383 183-189 CL:0000084 denotes T cell
T96288 288-305 CHEBI:35705;CHEBI:35705 denotes immunosuppressive
T80755 723-732 CHEBI:76612;CHEBI:76612 denotes ibrutinib
T56421 947-966 UBERON:0007221 denotes intensive care unit
T62889 1050-1059 UBERON:0002048 denotes pulmonary
T75194 1358-1369 NCBITaxon:1 denotes individuals
T71433 1611-1620 SO:0000993 denotes consensus

2_test

Id Subject Object Predicate Lexical cue
32572532-25354514-47963394 315-316 25354514 denotes 1
32572532-29437588-47963395 734-735 29437588 denotes 4
32572532-372590-47963396 842-843 372590 denotes 6
32572532-22895826-47963397 998-999 22895826 denotes 7
32572532-28387526-47963397 998-999 28387526 denotes 7
32572532-30076119-47963397 998-999 30076119 denotes 7
32572532-22517788-47963398 1745-1747 22517788 denotes 11
T48775 315-316 25354514 denotes 1
T15892 734-735 29437588 denotes 4
T86053 842-843 372590 denotes 6
T17737 998-999 22895826 denotes 7
T34194 998-999 28387526 denotes 7
T96222 998-999 30076119 denotes 7
T22940 1745-1747 22517788 denotes 11