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PMC:7306567 / 135-1918 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 1119-1124 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T2 1550-1554 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 1119-1124 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T2 1550-1554 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
5 8-40 Disease denotes Invasive pulmonary aspergillosis MESH:D055744
6 189-212 Disease denotes pulmonary aspergillosis MESH:D055732
7 254-278 Disease denotes invasive fungal diseases MESH:D000072742
16 1038-1051 Chemical denotes galactomannan MESH:C012990
17 784-804 Disease denotes respiratory distress MESH:D012128
18 1130-1151 Disease denotes pulmonary infiltrates MESH:D017254
19 1235-1252 Disease denotes tracheobronchitis
20 1267-1288 Disease denotes pulmonary infiltrates MESH:D017254
21 1372-1380 Disease denotes COVID-19 MESH:C000657245
22 1392-1415 Disease denotes pulmonary aspergillosis MESH:D055732
23 1530-1549 Disease denotes SARS-CoV-2-infected MESH:C000657245
26 1778-1782 Chemical denotes CAPA
27 1730-1749 Disease denotes Aspergillus disease MESH:D001228

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T3 27-40 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T4 83-92 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T5 168-177 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T6 199-212 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T7 821-830 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T8 1235-1252 Disease denotes tracheobronchitis http://purl.obolibrary.org/obo/MONDO_0021925
T9 1372-1380 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T10 1402-1415 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T11 1417-1421 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163
T12 1530-1538 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T13 1778-1782 Disease denotes CAPA http://purl.obolibrary.org/obo/MONDO_0007163

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T2 279-282 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T3 309-312 http://purl.obolibrary.org/obo/PR_000001343 denotes aim
T4 401-402 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T5 532-533 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T6 566-567 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T7 634-635 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T8 746-747 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T9 810-811 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T10 831-835 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T11 1155-1156 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T12 1550-1554 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T13 1550-1554 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T14 1568-1569 http://purl.obolibrary.org/obo/CLO_0001020 denotes A

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 403-408 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T2 1038-1051 Chemical denotes galactomannan http://purl.obolibrary.org/obo/CHEBI_27680
T3 1111-1114 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198

LitCovid-PD-GlycoEpitope

Id Subject Object Predicate Lexical cue glyco_epitope_db_id
T1 1038-1051 GlycoEpitope denotes galactomannan http://www.glycoepitope.jp/epitopes/EP0510

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 8-40 Phenotype denotes Invasive pulmonary aspergillosis http://purl.obolibrary.org/obo/HP_0020103
T2 784-804 Phenotype denotes respiratory distress http://purl.obolibrary.org/obo/HP_0002098
T3 1130-1151 Phenotype denotes pulmonary infiltrates http://purl.obolibrary.org/obo/HP_0002113
T4 1267-1288 Phenotype denotes pulmonary infiltrates http://purl.obolibrary.org/obo/HP_0002113

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T3 0-7 Sentence denotes Purpose
T4 8-135 Sentence denotes Invasive pulmonary aspergillosis is increasingly reported in patients with influenza admitted to the intensive care unit (ICU).
T5 136-391 Sentence denotes Classification of patients with influenza-associated pulmonary aspergillosis (IAPA) using the current definitions for invasive fungal diseases has proven difficult, and our aim was to develop case definitions for IAPA that can facilitate clinical studies.
T6 393-400 Sentence denotes Methods
T7 401-598 Sentence denotes A group of 29 international experts reviewed current insights into the epidemiology, diagnosis and management of IAPA and proposed a case definition of IAPA through a process of informal consensus.
T8 600-607 Sentence denotes Results
T9 608-710 Sentence denotes Since IAPA may develop in a wide range of hosts, an entry criterion was proposed and not host factors.
T10 711-872 Sentence denotes The entry criterion was defined as a patient requiring ICU admission for respiratory distress with a positive influenza test temporally related to ICU admission.
T11 873-997 Sentence denotes In addition, proven IAPA required histological evidence of invasive septate hyphae and mycological evidence for Aspergillus.
T12 998-1305 Sentence denotes Probable IAPA required the detection of galactomannan or positive Aspergillus culture in bronchoalveolar lavage (BAL) or serum with pulmonary infiltrates or a positive culture in upper respiratory samples with bronchoscopic evidence for tracheobronchitis or cavitating pulmonary infiltrates of recent onset.
T13 1306-1555 Sentence denotes The IAPA case definitions may be useful to classify patients with COVID-19-associated pulmonary aspergillosis (CAPA), while awaiting further studies that provide more insight into the interaction between Aspergillus and the SARS-CoV-2-infected lung.
T14 1557-1567 Sentence denotes Conclusion
T15 1568-1783 Sentence denotes A consensus case definition of IAPA is proposed, which will facilitate research into the epidemiology, diagnosis and management of this emerging acute and severe Aspergillus disease, and may be of use to study CAPA.

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T2 17-26 UBERON:0002048 denotes pulmonary
T3 119-123 UBERON:0007221 denotes care
T4 189-198 UBERON:0002048 denotes pulmonary
T5 263-269 NCBITaxon:4751 denotes fungal
T6 588-597 SO:0000993 denotes consensus
T7 784-795 UBERON:0001004 denotes respiratory
T8 985-996 NCBITaxon:5052 denotes Aspergillus
T9 1038-1051 CHEBI:27680;CHEBI:27680 denotes galactomannan
T10 1064-1075 NCBITaxon:5052 denotes Aspergillus
T11 1087-1102 UBERON:0002186 denotes bronchoalveolar
T12 1119-1124 UBERON:0001977 denotes serum
T13 1130-1139 UBERON:0002048 denotes pulmonary
T14 1183-1194 UBERON:0001004 denotes respiratory
T15 1235-1252 UBERON:0007196 denotes tracheobronchitis
T16 1267-1276 UBERON:0002048 denotes pulmonary
T17 1372-1380 SP_7 denotes COVID-19
T18 1392-1401 UBERON:0002048 denotes pulmonary
T19 1510-1521 NCBITaxon:5052 denotes Aspergillus
T20 1530-1540 SP_7 denotes SARS-CoV-2
T21 1550-1554 UBERON:0002048 denotes lung
T22 1570-1579 SO:0000993 denotes consensus
T74802 17-26 UBERON:0002048 denotes pulmonary
T39139 119-123 UBERON:0007221 denotes care
T12430 189-198 UBERON:0002048 denotes pulmonary
T5245 263-269 NCBITaxon:4751 denotes fungal
T36609 588-597 SO:0000993 denotes consensus
T75692 784-795 UBERON:0001004 denotes respiratory
T84443 985-996 NCBITaxon:5052 denotes Aspergillus
T34269 1038-1051 CHEBI:27680;CHEBI:27680 denotes galactomannan
T60679 1064-1075 NCBITaxon:5052 denotes Aspergillus
T26342 1087-1102 UBERON:0002186 denotes bronchoalveolar
T99495 1119-1124 UBERON:0001977 denotes serum
T26592 1130-1139 UBERON:0002048 denotes pulmonary
T63277 1183-1194 UBERON:0001004 denotes respiratory
T58436 1235-1252 UBERON:0007196 denotes tracheobronchitis
T13528 1267-1276 UBERON:0002048 denotes pulmonary
T41590 1372-1380 SP_7 denotes COVID-19
T91554 1392-1401 UBERON:0002048 denotes pulmonary
T48258 1510-1521 NCBITaxon:5052 denotes Aspergillus
T27026 1530-1540 SP_7 denotes SARS-CoV-2
T42156 1550-1554 UBERON:0002048 denotes lung
T10504 1570-1579 SO:0000993 denotes consensus