PMC:7306567 / 13320-13572 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7306567","sourcedb":"PMC","sourceid":"7306567","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7306567","text":"Ideally, this would include in order of invasiveness, serum GM testing, fungal cultures of sputum and/or tracheal aspirate, pulmonary CT, bronchoscopy to visualize the large airways and obtain BAL fluid for GM testing and fungal and bacterial cultures.","tracks":[{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T16","span":{"begin":54,"end":59},"obj":"Body_part"},{"id":"T17","span":{"begin":91,"end":97},"obj":"Body_part"}],"attributes":[{"id":"A16","pred":"fma_id","subj":"T16","obj":"http://purl.org/sig/ont/fma/fma63083"},{"id":"A17","pred":"fma_id","subj":"T17","obj":"http://purl.org/sig/ont/fma/fma312401"},{"subj":"T16","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T17","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T14","span":{"begin":54,"end":59},"obj":"Body_part"},{"id":"T15","span":{"begin":91,"end":97},"obj":"Body_part"}],"attributes":[{"id":"A14","pred":"uberon_id","subj":"T14","obj":"http://purl.obolibrary.org/obo/UBERON_0001977"},{"id":"A15","pred":"uberon_id","subj":"T15","obj":"http://purl.obolibrary.org/obo/UBERON_0007311"},{"subj":"T14","pred":"source","obj":"LitCovid-PD-UBERON"},{"subj":"T15","pred":"source","obj":"LitCovid-PD-UBERON"}]},{"project":"LitCovid-PubTator","denotations":[{"id":"131","span":{"begin":60,"end":62},"obj":"Chemical"},{"id":"132","span":{"begin":207,"end":209},"obj":"Chemical"}],"attributes":[{"id":"A131","pred":"tao:has_database_id","subj":"131","obj":"MESH:C012990"},{"id":"A132","pred":"tao:has_database_id","subj":"132","obj":"MESH:C012990"},{"subj":"131","pred":"source","obj":"LitCovid-PubTator"},{"subj":"132","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T83","span":{"begin":63,"end":70},"obj":"http://purl.obolibrary.org/obo/UBERON_0000473"},{"id":"T84","span":{"begin":174,"end":181},"obj":"http://purl.obolibrary.org/obo/UBERON_0001005"},{"id":"T85","span":{"begin":210,"end":217},"obj":"http://purl.obolibrary.org/obo/UBERON_0000473"}],"attributes":[{"subj":"T83","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T84","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T85","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T74","span":{"begin":60,"end":62},"obj":"Chemical"},{"id":"T76","span":{"begin":193,"end":196},"obj":"Chemical"},{"id":"T77","span":{"begin":207,"end":209},"obj":"Chemical"}],"attributes":[{"id":"A74","pred":"chebi_id","subj":"T74","obj":"http://purl.obolibrary.org/obo/CHEBI_74120"},{"id":"A75","pred":"chebi_id","subj":"T74","obj":"http://purl.obolibrary.org/obo/CHEBI_27680"},{"id":"A76","pred":"chebi_id","subj":"T76","obj":"http://purl.obolibrary.org/obo/CHEBI_64198"},{"id":"A77","pred":"chebi_id","subj":"T77","obj":"http://purl.obolibrary.org/obo/CHEBI_74120"},{"id":"A78","pred":"chebi_id","subj":"T77","obj":"http://purl.obolibrary.org/obo/CHEBI_27680"},{"subj":"T74","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T76","pred":"source","obj":"LitCovid-PD-CHEBI"},{"subj":"T77","pred":"source","obj":"LitCovid-PD-CHEBI"}]},{"project":"LitCovid-PD-GlycoEpitope","denotations":[{"id":"T9","span":{"begin":60,"end":62},"obj":"GlycoEpitope"},{"id":"T10","span":{"begin":207,"end":209},"obj":"GlycoEpitope"}],"attributes":[{"id":"A9","pred":"glyco_epitope_db_id","subj":"T9","obj":"http://www.glycoepitope.jp/epitopes/EP0510"},{"id":"A10","pred":"glyco_epitope_db_id","subj":"T10","obj":"http://www.glycoepitope.jp/epitopes/EP0510"},{"subj":"T9","pred":"source","obj":"LitCovid-PD-GlycoEpitope"},{"subj":"T10","pred":"source","obj":"LitCovid-PD-GlycoEpitope"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T86","span":{"begin":0,"end":252},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T86","pred":"source","obj":"LitCovid-sentences"}]},{"project":"LitCovid-PMC-OGER-BB","denotations":[{"id":"T97","span":{"begin":54,"end":59},"obj":"UBERON:0001977"},{"id":"T98","span":{"begin":72,"end":78},"obj":"NCBITaxon:4751"},{"id":"T99","span":{"begin":91,"end":97},"obj":"UBERON:0007311"},{"id":"T100","span":{"begin":105,"end":113},"obj":"UBERON:0003126"},{"id":"T101","span":{"begin":124,"end":133},"obj":"UBERON:0002048"},{"id":"T102","span":{"begin":174,"end":181},"obj":"UBERON:0001005"},{"id":"T103","span":{"begin":197,"end":202},"obj":"UBERON:0006314"},{"id":"T104","span":{"begin":222,"end":228},"obj":"NCBITaxon:4751"},{"id":"T105","span":{"begin":233,"end":242},"obj":"NCBITaxon:2"},{"id":"T93733","span":{"begin":54,"end":59},"obj":"UBERON:0001977"},{"id":"T7027","span":{"begin":72,"end":78},"obj":"NCBITaxon:4751"},{"id":"T1997","span":{"begin":91,"end":97},"obj":"UBERON:0007311"},{"id":"T25508","span":{"begin":105,"end":113},"obj":"UBERON:0003126"},{"id":"T27731","span":{"begin":124,"end":133},"obj":"UBERON:0002048"},{"id":"T66249","span":{"begin":174,"end":181},"obj":"UBERON:0001005"},{"id":"T68615","span":{"begin":197,"end":202},"obj":"UBERON:0006314"},{"id":"T43239","span":{"begin":222,"end":228},"obj":"NCBITaxon:4751"},{"id":"T51425","span":{"begin":233,"end":242},"obj":"NCBITaxon:2"}],"attributes":[{"subj":"T97","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T98","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T99","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T100","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T101","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T102","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T103","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T104","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T105","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T93733","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T7027","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T1997","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T25508","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T27731","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T66249","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T68615","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T43239","pred":"source","obj":"LitCovid-PMC-OGER-BB"},{"subj":"T51425","pred":"source","obj":"LitCovid-PMC-OGER-BB"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PD-FMA-UBERON","color":"#ccec93","default":true},{"id":"LitCovid-PD-UBERON","color":"#ec93e6"},{"id":"LitCovid-PubTator","color":"#93ecd8"},{"id":"LitCovid-PD-CLO","color":"#ecbe93"},{"id":"LitCovid-PD-CHEBI","color":"#a493ec"},{"id":"LitCovid-PD-GlycoEpitope","color":"#9cec93"},{"id":"LitCovid-sentences","color":"#ec93b6"},{"id":"LitCovid-PMC-OGER-BB","color":"#93d0ec"}]}]}}