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PMC:7306567 / 13143-14109 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T16 231-236 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T17 268-274 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T14 231-236 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T15 268-274 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
131 237-239 Chemical denotes GM MESH:C012990
132 384-386 Chemical denotes GM MESH:C012990
133 59-80 Disease denotes pulmonary infiltrates MESH:D017254
134 616-633 Disease denotes tracheobronchitis
135 855-863 Disease denotes bleeding MESH:D006470

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T67 44-53 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T68 616-633 Disease denotes tracheobronchitis http://purl.obolibrary.org/obo/MONDO_0021925
T69 663-673 Disease denotes ulceration http://purl.obolibrary.org/obo/MONDO_0043839

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T81 3-4 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T82 40-43 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T83 240-247 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T84 351-358 http://purl.obolibrary.org/obo/UBERON_0001005 denotes airways
T85 387-394 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T86 430-440 http://purl.obolibrary.org/obo/UBERON_0000473 denotes Testing is
T87 734-736 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T88 904-905 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T74 237-239 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T76 370-373 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T77 384-386 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T79 729-732 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802

LitCovid-PD-GlycoEpitope

Id Subject Object Predicate Lexical cue glyco_epitope_db_id
T9 237-239 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T10 384-386 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T21 59-80 Phenotype denotes pulmonary infiltrates http://purl.obolibrary.org/obo/HP_0002113
T22 729-732 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T85 0-176 Sentence denotes If a patient is admitted to the ICU and has influenza with pulmonary infiltrates, the diagnosis of IAPA should be considered and further investigation performed as appropriate.
T86 177-429 Sentence denotes Ideally, this would include in order of invasiveness, serum GM testing, fungal cultures of sputum and/or tracheal aspirate, pulmonary CT, bronchoscopy to visualize the large airways and obtain BAL fluid for GM testing and fungal and bacterial cultures.
T87 430-573 Sentence denotes Testing is most appropriate in patients who are on mechanical ventilation, but the diagnostic strategy is less clear in patients not intubated.
T88 574-738 Sentence denotes As up to 50% of patients may present with tracheobronchitis, the presence of plaques and ulceration might be considered for inclusion in the definition of IPA [35].
T89 739-892 Sentence denotes Policies for taking biopsies of lesions seen on bronchoscopy may vary, mainly because of concerns about the risk of bleeding with biopsy in ICU patients.
T90 893-966 Sentence denotes The use of a flexible brush may also be sufficient to make the diagnosis.

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T96 59-68 UBERON:0002048 denotes pulmonary
T97 231-236 UBERON:0001977 denotes serum
T98 249-255 NCBITaxon:4751 denotes fungal
T99 268-274 UBERON:0007311 denotes sputum
T100 282-290 UBERON:0003126 denotes tracheal
T101 301-310 UBERON:0002048 denotes pulmonary
T102 351-358 UBERON:0001005 denotes airways
T103 374-379 UBERON:0006314 denotes fluid
T104 399-405 NCBITaxon:4751 denotes fungal
T105 410-419 NCBITaxon:2 denotes bacterial
T106 616-633 UBERON:0007196 denotes tracheobronchitis
T56564 59-68 UBERON:0002048 denotes pulmonary
T93733 231-236 UBERON:0001977 denotes serum
T7027 249-255 NCBITaxon:4751 denotes fungal
T1997 268-274 UBERON:0007311 denotes sputum
T25508 282-290 UBERON:0003126 denotes tracheal
T27731 301-310 UBERON:0002048 denotes pulmonary
T66249 351-358 UBERON:0001005 denotes airways
T68615 374-379 UBERON:0006314 denotes fluid
T43239 399-405 NCBITaxon:4751 denotes fungal
T51425 410-419 NCBITaxon:2 denotes bacterial
T29952 616-633 UBERON:0007196 denotes tracheobronchitis

2_test

Id Subject Object Predicate Lexical cue
32572532-27365388-47963428 734-736 27365388 denotes 35
T9256 734-736 27365388 denotes 35