PMC:7306567 / 13085-14404
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T16 | 289-294 | Body_part | denotes | serum | http://purl.org/sig/ont/fma/fma63083 |
| T17 | 326-332 | Body_part | denotes | sputum | http://purl.org/sig/ont/fma/fma312401 |
| T18 | 1045-1050 | Body_part | denotes | serum | http://purl.org/sig/ont/fma/fma63083 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T14 | 289-294 | Body_part | denotes | serum | http://purl.obolibrary.org/obo/UBERON_0001977 |
| T15 | 326-332 | Body_part | denotes | sputum | http://purl.obolibrary.org/obo/UBERON_0007311 |
| T16 | 1045-1050 | Body_part | denotes | serum | http://purl.obolibrary.org/obo/UBERON_0001977 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 131 | 295-297 | Chemical | denotes | GM | MESH:C012990 |
| 132 | 442-444 | Chemical | denotes | GM | MESH:C012990 |
| 133 | 117-138 | Disease | denotes | pulmonary infiltrates | MESH:D017254 |
| 134 | 674-691 | Disease | denotes | tracheobronchitis | |
| 135 | 913-921 | Disease | denotes | bleeding | MESH:D006470 |
| 140 | 1051-1053 | Chemical | denotes | GM | MESH:C012990 |
| 141 | 1086-1088 | Chemical | denotes | GM | MESH:C012990 |
| 142 | 1219-1235 | Disease | denotes | invasive disease | MESH:D009361 |
| 143 | 1286-1302 | Disease | denotes | invasive disease | MESH:D009361 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T67 | 102-111 | Disease | denotes | influenza | http://purl.obolibrary.org/obo/MONDO_0005812 |
| T68 | 674-691 | Disease | denotes | tracheobronchitis | http://purl.obolibrary.org/obo/MONDO_0021925 |
| T69 | 721-731 | Disease | denotes | ulceration | http://purl.obolibrary.org/obo/MONDO_0043839 |
| T70 | 1078-1080 | Disease | denotes | IA | http://purl.obolibrary.org/obo/MONDO_0000240 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T81 | 61-62 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T82 | 98-101 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T83 | 298-305 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | testing |
| T84 | 409-416 | http://purl.obolibrary.org/obo/UBERON_0001005 | denotes | airways |
| T85 | 445-452 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | testing |
| T86 | 488-498 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | Testing is |
| T87 | 792-794 | http://purl.obolibrary.org/obo/CLO_0001000 | denotes | 35 |
| T88 | 962-963 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T89 | 1034-1035 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T90 | 1134-1146 | http://purl.obolibrary.org/obo/UBERON_0001155 | denotes | colonization |
| T91 | 1202-1214 | http://purl.obolibrary.org/obo/UBERON_0001155 | denotes | colonization |
| T92 | 1315-1317 | http://purl.obolibrary.org/obo/CLO_0001313 | denotes | 36 |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T74 | 295-297 | Chemical | denotes | GM | http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680 |
| T76 | 428-431 | Chemical | denotes | BAL | http://purl.obolibrary.org/obo/CHEBI_64198 |
| T77 | 442-444 | Chemical | denotes | GM | http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680 |
| T79 | 787-790 | Chemical | denotes | IPA | http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802 |
| T81 | 1051-1053 | Chemical | denotes | GM | http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680 |
| T83 | 1078-1080 | Chemical | denotes | IA | http://purl.obolibrary.org/obo/CHEBI_74062 |
| T84 | 1082-1085 | Chemical | denotes | BAL | http://purl.obolibrary.org/obo/CHEBI_64198 |
| T85 | 1086-1088 | Chemical | denotes | GM | http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680 |
LitCovid-PD-GlycoEpitope
| Id | Subject | Object | Predicate | Lexical cue | glyco_epitope_db_id |
|---|---|---|---|---|---|
| T9 | 295-297 | GlycoEpitope | denotes | GM | http://www.glycoepitope.jp/epitopes/EP0510 |
| T10 | 442-444 | GlycoEpitope | denotes | GM | http://www.glycoepitope.jp/epitopes/EP0510 |
| T11 | 1051-1053 | GlycoEpitope | denotes | GM | http://www.glycoepitope.jp/epitopes/EP0510 |
| T12 | 1086-1088 | GlycoEpitope | denotes | GM | http://www.glycoepitope.jp/epitopes/EP0510 |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T21 | 117-138 | Phenotype | denotes | pulmonary infiltrates | http://purl.obolibrary.org/obo/HP_0002113 |
| T22 | 787-790 | Phenotype | denotes | IPA | http://purl.obolibrary.org/obo/HP_0020103 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T84 | 0-57 | Sentence | denotes | Discussion on clinical presentation and diagnosis of IAPA |
| T85 | 58-234 | Sentence | denotes | If a patient is admitted to the ICU and has influenza with pulmonary infiltrates, the diagnosis of IAPA should be considered and further investigation performed as appropriate. |
| T86 | 235-487 | Sentence | denotes | Ideally, this would include in order of invasiveness, serum GM testing, fungal cultures of sputum and/or tracheal aspirate, pulmonary CT, bronchoscopy to visualize the large airways and obtain BAL fluid for GM testing and fungal and bacterial cultures. |
| T87 | 488-631 | Sentence | denotes | Testing is most appropriate in patients who are on mechanical ventilation, but the diagnostic strategy is less clear in patients not intubated. |
| T88 | 632-796 | Sentence | denotes | As up to 50% of patients may present with tracheobronchitis, the presence of plaques and ulceration might be considered for inclusion in the definition of IPA [35]. |
| T89 | 797-950 | Sentence | denotes | Policies for taking biopsies of lesions seen on bronchoscopy may vary, mainly because of concerns about the risk of bleeding with biopsy in ICU patients. |
| T90 | 951-1024 | Sentence | denotes | The use of a flexible brush may also be sufficient to make the diagnosis. |
| T91 | 1025-1147 | Sentence | denotes | Although a positive serum GM is highly indicative of IA, BAL GM can be positive in patients with Aspergillus colonization. |
| T92 | 1148-1236 | Sentence | denotes | It therefore does not absolutely discriminate between colonization and invasive disease. |
| T93 | 1237-1319 | Sentence | denotes | However, it clearly makes it more likely that an invasive disease is present [36]. |
LitCovid-PMC-OGER-BB
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T96 | 117-126 | UBERON:0002048 | denotes | pulmonary |
| T97 | 289-294 | UBERON:0001977 | denotes | serum |
| T98 | 307-313 | NCBITaxon:4751 | denotes | fungal |
| T99 | 326-332 | UBERON:0007311 | denotes | sputum |
| T100 | 340-348 | UBERON:0003126 | denotes | tracheal |
| T101 | 359-368 | UBERON:0002048 | denotes | pulmonary |
| T102 | 409-416 | UBERON:0001005 | denotes | airways |
| T103 | 432-437 | UBERON:0006314 | denotes | fluid |
| T104 | 457-463 | NCBITaxon:4751 | denotes | fungal |
| T105 | 468-477 | NCBITaxon:2 | denotes | bacterial |
| T106 | 674-691 | UBERON:0007196 | denotes | tracheobronchitis |
| T107 | 1045-1050 | UBERON:0001977 | denotes | serum |
| T108 | 1122-1133 | NCBITaxon:5052 | denotes | Aspergillus |
| T56564 | 117-126 | UBERON:0002048 | denotes | pulmonary |
| T93733 | 289-294 | UBERON:0001977 | denotes | serum |
| T7027 | 307-313 | NCBITaxon:4751 | denotes | fungal |
| T1997 | 326-332 | UBERON:0007311 | denotes | sputum |
| T25508 | 340-348 | UBERON:0003126 | denotes | tracheal |
| T27731 | 359-368 | UBERON:0002048 | denotes | pulmonary |
| T66249 | 409-416 | UBERON:0001005 | denotes | airways |
| T68615 | 432-437 | UBERON:0006314 | denotes | fluid |
| T43239 | 457-463 | NCBITaxon:4751 | denotes | fungal |
| T51425 | 468-477 | NCBITaxon:2 | denotes | bacterial |
| T29952 | 674-691 | UBERON:0007196 | denotes | tracheobronchitis |
| T93605 | 1045-1050 | UBERON:0001977 | denotes | serum |
| T4489 | 1122-1133 | NCBITaxon:5052 | denotes | Aspergillus |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32572532-27365388-47963428 | 792-794 | 27365388 | denotes | 35 |
| T9256 | 792-794 | 27365388 | denotes | 35 |