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PMC:7306567 / 13085-14404 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T16 289-294 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T17 326-332 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401
T18 1045-1050 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T14 289-294 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T15 326-332 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311
T16 1045-1050 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
131 295-297 Chemical denotes GM MESH:C012990
132 442-444 Chemical denotes GM MESH:C012990
133 117-138 Disease denotes pulmonary infiltrates MESH:D017254
134 674-691 Disease denotes tracheobronchitis
135 913-921 Disease denotes bleeding MESH:D006470
140 1051-1053 Chemical denotes GM MESH:C012990
141 1086-1088 Chemical denotes GM MESH:C012990
142 1219-1235 Disease denotes invasive disease MESH:D009361
143 1286-1302 Disease denotes invasive disease MESH:D009361

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T67 102-111 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T68 674-691 Disease denotes tracheobronchitis http://purl.obolibrary.org/obo/MONDO_0021925
T69 721-731 Disease denotes ulceration http://purl.obolibrary.org/obo/MONDO_0043839
T70 1078-1080 Disease denotes IA http://purl.obolibrary.org/obo/MONDO_0000240

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T81 61-62 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T82 98-101 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T83 298-305 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T84 409-416 http://purl.obolibrary.org/obo/UBERON_0001005 denotes airways
T85 445-452 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T86 488-498 http://purl.obolibrary.org/obo/UBERON_0000473 denotes Testing is
T87 792-794 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T88 962-963 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T89 1034-1035 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T90 1134-1146 http://purl.obolibrary.org/obo/UBERON_0001155 denotes colonization
T91 1202-1214 http://purl.obolibrary.org/obo/UBERON_0001155 denotes colonization
T92 1315-1317 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T74 295-297 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T76 428-431 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T77 442-444 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T79 787-790 Chemical denotes IPA http://purl.obolibrary.org/obo/CHEBI_17824|http://purl.obolibrary.org/obo/CHEBI_30802
T81 1051-1053 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680
T83 1078-1080 Chemical denotes IA http://purl.obolibrary.org/obo/CHEBI_74062
T84 1082-1085 Chemical denotes BAL http://purl.obolibrary.org/obo/CHEBI_64198
T85 1086-1088 Chemical denotes GM http://purl.obolibrary.org/obo/CHEBI_74120|http://purl.obolibrary.org/obo/CHEBI_27680

LitCovid-PD-GlycoEpitope

Id Subject Object Predicate Lexical cue glyco_epitope_db_id
T9 295-297 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T10 442-444 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T11 1051-1053 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T12 1086-1088 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T21 117-138 Phenotype denotes pulmonary infiltrates http://purl.obolibrary.org/obo/HP_0002113
T22 787-790 Phenotype denotes IPA http://purl.obolibrary.org/obo/HP_0020103

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T84 0-57 Sentence denotes Discussion on clinical presentation and diagnosis of IAPA
T85 58-234 Sentence denotes If a patient is admitted to the ICU and has influenza with pulmonary infiltrates, the diagnosis of IAPA should be considered and further investigation performed as appropriate.
T86 235-487 Sentence denotes Ideally, this would include in order of invasiveness, serum GM testing, fungal cultures of sputum and/or tracheal aspirate, pulmonary CT, bronchoscopy to visualize the large airways and obtain BAL fluid for GM testing and fungal and bacterial cultures.
T87 488-631 Sentence denotes Testing is most appropriate in patients who are on mechanical ventilation, but the diagnostic strategy is less clear in patients not intubated.
T88 632-796 Sentence denotes As up to 50% of patients may present with tracheobronchitis, the presence of plaques and ulceration might be considered for inclusion in the definition of IPA [35].
T89 797-950 Sentence denotes Policies for taking biopsies of lesions seen on bronchoscopy may vary, mainly because of concerns about the risk of bleeding with biopsy in ICU patients.
T90 951-1024 Sentence denotes The use of a flexible brush may also be sufficient to make the diagnosis.
T91 1025-1147 Sentence denotes Although a positive serum GM is highly indicative of IA, BAL GM can be positive in patients with Aspergillus colonization.
T92 1148-1236 Sentence denotes It therefore does not absolutely discriminate between colonization and invasive disease.
T93 1237-1319 Sentence denotes However, it clearly makes it more likely that an invasive disease is present [36].

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T96 117-126 UBERON:0002048 denotes pulmonary
T97 289-294 UBERON:0001977 denotes serum
T98 307-313 NCBITaxon:4751 denotes fungal
T99 326-332 UBERON:0007311 denotes sputum
T100 340-348 UBERON:0003126 denotes tracheal
T101 359-368 UBERON:0002048 denotes pulmonary
T102 409-416 UBERON:0001005 denotes airways
T103 432-437 UBERON:0006314 denotes fluid
T104 457-463 NCBITaxon:4751 denotes fungal
T105 468-477 NCBITaxon:2 denotes bacterial
T106 674-691 UBERON:0007196 denotes tracheobronchitis
T107 1045-1050 UBERON:0001977 denotes serum
T108 1122-1133 NCBITaxon:5052 denotes Aspergillus
T56564 117-126 UBERON:0002048 denotes pulmonary
T93733 289-294 UBERON:0001977 denotes serum
T7027 307-313 NCBITaxon:4751 denotes fungal
T1997 326-332 UBERON:0007311 denotes sputum
T25508 340-348 UBERON:0003126 denotes tracheal
T27731 359-368 UBERON:0002048 denotes pulmonary
T66249 409-416 UBERON:0001005 denotes airways
T68615 432-437 UBERON:0006314 denotes fluid
T43239 457-463 NCBITaxon:4751 denotes fungal
T51425 468-477 NCBITaxon:2 denotes bacterial
T29952 674-691 UBERON:0007196 denotes tracheobronchitis
T93605 1045-1050 UBERON:0001977 denotes serum
T4489 1122-1133 NCBITaxon:5052 denotes Aspergillus

2_test

Id Subject Object Predicate Lexical cue
32572532-27365388-47963428 792-794 27365388 denotes 35
T9256 792-794 27365388 denotes 35