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PMC:7301188 / 2628-6178 JSONTXT

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LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T26 131-139 SP_7 denotes COVID-19
T27 351-358 GO:0005634 denotes nucleic
T28 372-382 SP_7 denotes SARS-CoV-2
T29 529-534 GO:0016265 denotes death
T30 993-999 NCBITaxon:859912 denotes Corona
T31 1304-1313 UBERON:0002048 denotes pneumonia
T32 1387-1404 UBERON:0000065 denotes respiratory tract
T33 1419-1428 UBERON:0002048 denotes pneumonia
T34 1510-1521 UBERON:0001004 denotes respiratory
T35 1612-1620 UBERON:0001637 denotes arterial
T36 1779-1788 UBERON:0002048 denotes pulmonary
T37 1872-1883 UBERON:0001004 denotes respiratory
T38 1980-1985 UBERON:0000062 denotes organ
T39 2203-2208 GO:0016265 denotes death
T80853 131-139 SP_7 denotes COVID-19
T772 351-358 GO:0005634 denotes nucleic
T34888 372-382 SP_7 denotes SARS-CoV-2
T68971 529-534 GO:0016265 denotes death
T55122 993-999 NCBITaxon:859912 denotes Corona
T25183 1304-1313 UBERON:0002048 denotes pneumonia
T28285 1387-1404 UBERON:0000065 denotes respiratory tract
T87513 1419-1428 UBERON:0002048 denotes pneumonia
T92813 1510-1521 UBERON:0001004 denotes respiratory
T4800 1612-1620 UBERON:0001637 denotes arterial
T31469 1779-1788 UBERON:0002048 denotes pulmonary
T70684 1872-1883 UBERON:0001004 denotes respiratory
T87749 1980-1985 UBERON:0000062 denotes organ
T90276 2203-2208 GO:0016265 denotes death

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T4 1387-1404 Body_part denotes respiratory tract http://purl.org/sig/ont/fma/fma265130
T5 1980-1985 Body_part denotes organ http://purl.org/sig/ont/fma/fma67498

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T3 1387-1404 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065
T4 1980-1985 Body_part denotes organ http://purl.obolibrary.org/obo/UBERON_0000062

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
81 41-49 Species denotes Patients Tax:9606
87 107-115 Species denotes patients Tax:9606
88 313-321 Species denotes patients Tax:9606
89 372-382 Species denotes SARS-CoV-2 Tax:2697049
90 131-139 Disease denotes COVID-19 MESH:C000657245
91 529-534 Disease denotes death MESH:D003643
106 1115-1121 Species denotes People Tax:9606
107 1716-1724 Species denotes Patients Tax:9606
108 1557-1563 Chemical denotes oxygen MESH:D010100
109 1641-1647 Chemical denotes oxygen MESH:D010100
110 1655-1661 Chemical denotes oxygen MESH:D010100
111 1677-1681 Chemical denotes FiO2
112 993-1018 Disease denotes Corona Virus Disease 2019 MESH:C000657245
113 1304-1313 Disease denotes pneumonia MESH:D011014
114 1377-1382 Disease denotes fever MESH:D005334
115 1387-1413 Disease denotes respiratory tract symptoms MESH:D012140
116 1419-1428 Disease denotes pneumonia MESH:D011014
117 1510-1530 Disease denotes respiratory distress MESH:D012128
118 1872-1891 Disease denotes respiratory failure MESH:D012131
119 1980-1993 Disease denotes organ failure MESH:D009102
121 2060-2067 Disease denotes Illness MESH:D002908
123 2203-2208 Disease denotes death MESH:D003643
127 2417-2422 Gene denotes PT1-3 Gene:58492
128 2410-2413 Gene denotes DD1 Gene:1645
129 2378-2380 Gene denotes Fg Gene:2244
131 3032-3041 Disease denotes mortality MESH:D003643
133 3278-3285 Species denotes Patient Tax:9606
136 3360-3368 Species denotes patients Tax:9606
137 3473-3481 Species denotes patients Tax:9606

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T39 131-139 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T40 372-380 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T41 993-1018 Disease denotes Corona Virus Disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T42 1304-1313 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T43 1419-1428 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T44 1872-1891 Disease denotes respiratory failure http://purl.obolibrary.org/obo/MONDO_0021113
T45 2360-2362 Disease denotes DD http://purl.obolibrary.org/obo/MONDO_0009107|http://purl.obolibrary.org/obo/MONDO_0015613
T47 2938-2940 Disease denotes DD http://purl.obolibrary.org/obo/MONDO_0009107|http://purl.obolibrary.org/obo/MONDO_0015613

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T31 92-93 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T32 255-257 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T33 326-327 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T34 364-368 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T35 561-562 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T36 695-696 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T37 1000-1005 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes Virus
T38 1595-1596 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T39 1612-1620 http://purl.obolibrary.org/obo/UBERON_0001637 denotes arterial
T40 1612-1620 http://www.ebi.ac.uk/efo/EFO_0000814 denotes arterial
T41 1767-1769 http://purl.obolibrary.org/obo/CLO_0001382 denotes 48
T42 1980-1985 http://purl.obolibrary.org/obo/UBERON_0003103 denotes organ
T43 2300-2303 http://purl.obolibrary.org/obo/CLO_0001000 denotes 3-5
T44 2399-2406 http://purl.obolibrary.org/obo/CLO_0007225 denotes labeled
T45 2733-2737 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T46 2772-2776 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T47 3213-3216 http://purl.obolibrary.org/obo/CLO_0001547 denotes A P
T48 3318-3319 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T23 351-363 Chemical denotes nucleic acid http://purl.obolibrary.org/obo/CHEBI_33696
T24 359-363 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T25 1532-1534 Chemical denotes RR http://purl.obolibrary.org/obo/CHEBI_73811
T26 1557-1563 Chemical denotes oxygen http://purl.obolibrary.org/obo/CHEBI_25805
T27 1641-1647 Chemical denotes oxygen http://purl.obolibrary.org/obo/CHEBI_25805
T28 1655-1661 Chemical denotes oxygen http://purl.obolibrary.org/obo/CHEBI_25805
T29 2360-2362 Chemical denotes DD http://purl.obolibrary.org/obo/CHEBI_73446
T30 2364-2366 Chemical denotes PT http://purl.obolibrary.org/obo/CHEBI_141395
T31 2938-2940 Chemical denotes DD http://purl.obolibrary.org/obo/CHEBI_73446
T32 2945-2947 Chemical denotes PT http://purl.obolibrary.org/obo/CHEBI_141395

LitCovid-PD-GlycoEpitope

Id Subject Object Predicate Lexical cue glyco_epitope_db_id
T1 2410-2413 GlycoEpitope denotes DD1 http://www.glycoepitope.jp/epitopes/AN0523

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T26 0-2 Sentence denotes 2.
T27 3-24 Sentence denotes Materials and Methods
T28 26-30 Sentence denotes 2.1.
T29 31-72 Sentence denotes Source of Patients and Diagnosis Criteria
T30 73-298 Sentence denotes The information of a total of 115 patients with confirmed COVID-19 who were admitted to Tianyou Hospital affiliated to the Wuhan University of Science and Technology between January 18, 2020, and March 5, 2020, was collected.
T31 299-416 Sentence denotes The confirmed patients had a positive result of the nucleic acid test of SARS-CoV-2 by real-time fluorescence RT-PCR.
T32 417-499 Sentence denotes Three clinical disease assessments were conducted using laboratory data collected.
T33 500-648 Sentence denotes Cases of hospital discharge, death, and under treatment with a duration of hospitalization longer than 14 days prior to March 5, 2020, were studied.
T34 649-784 Sentence denotes Cases with incomplete laboratory data or with a duration of hospitalization shorter than 14 days prior to March 5, 2020, were excluded.
T35 785-894 Sentence denotes This study was approved by the Medical Ethics Review Board of Wuhan University of Science and Technology (No.
T36 895-903 Sentence denotes 202009).
T37 905-909 Sentence denotes 2.2.
T38 910-934 Sentence denotes Clinical Classifications
T39 936-942 Sentence denotes 2.2.1.
T40 943-962 Sentence denotes Case Identification
T41 963-1019 Sentence denotes According to the Guidance for Corona Virus Disease 2019:
T42 1020-1715 Sentence denotes Prevention, Control, Diagnosis, and Management edited by the National Health Commission of the People's Republic of China, all cases were identified into four categories of mild cases, ordinary cases, severe cases, and critical cases. (1) Mild cases had mild clinical symptoms and no pneumonia manifestation in imaging. (2) Ordinary cases had symptoms like fever and respiratory tract symptoms, and pneumonia manifestation can be seen in imaging. (3) Severe cases met any of the following: respiratory distress, RR ≥ 30 breaths/min; the oxygen saturation is less than 93% at a rest state; or arterial partial pressure of oxygen (PaO2)/oxygen concentration (FiO2) ≤ 300 mmHg (1 mmHg = 0.133 kPa).
T43 1716-2040 Sentence denotes Patients with >50% lesion progression within 24 to 48 hours in pulmonary imaging were treated as severe cases. (4) Critical cases met any of the following: respiratory failure occurs, and mechanical ventilation is required; shock occurs; or complicated with other organ failure that requires monitoring and treatment in ICU.
T44 2042-2048 Sentence denotes 2.2.2.
T45 2049-2067 Sentence denotes Outcome of Illness
T46 2068-2209 Sentence denotes According to clinical progression, outcomes in endpoints were divided into four types: hospital discharge, improved, exacerbation, and death.
T47 2211-2215 Sentence denotes 2.3.
T48 2216-2231 Sentence denotes Data Collection
T49 2232-2359 Sentence denotes The laboratory data were collected at three time points: admission, 3-5 days of hospitalization, and at the composite endpoint.
T50 2360-2464 Sentence denotes DD, PT, APTT, and Fg were obtained and labeled as DD1-3, PT1-3, APTT1-3, TT1-3, and Fg1-3, respectively.
T51 2465-2557 Sentence denotes Meanwhile, case identification, imaging identification, and outcome of illness were defined.
T52 2559-2563 Sentence denotes 2.4.
T53 2564-2583 Sentence denotes Statistical Methods
T54 2584-2648 Sentence denotes Statistical analysis was conducted using the SPSS 25.0 software.
T55 2649-2711 Sentence denotes Descriptive statistics included means and standard deviations.
T56 2712-2825 Sentence denotes The Kruskal-Wallis H-test and independent sample chi-square test were used to analyze differences between groups.
T57 2826-3065 Sentence denotes The Receiver Operating Characteristic curve (ROC curve) was used to calculate the area under the curve (AUC) of DD and PT in order to evaluate the sensitivity and specificity of these factors in predicting mortality and hospital discharge.
T58 3066-3212 Sentence denotes Spearman's rank correlation analysis was utilized to measure the degree of correlation between the hierarchically ordered variables in this study.
T59 3213-3271 Sentence denotes A P value < 0.05 was considered statistically significant.
T60 3273-3277 Sentence denotes 2.5.
T61 3278-3308 Sentence denotes Patient and Public Involvement
T62 3309-3469 Sentence denotes This was a retrospective case series study, and no patients were involved in the study design, setting the research questions, or the outcome measures directly.
T63 3470-3550 Sentence denotes No patients were asked to advise on the interpretation or writing up of results.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T3 1304-1313 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T4 1377-1382 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T5 1419-1428 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T6 1510-1530 Phenotype denotes respiratory distress http://purl.obolibrary.org/obo/HP_0002098
T7 1872-1891 Phenotype denotes respiratory failure http://purl.obolibrary.org/obo/HP_0002878
T8 1940-1945 Phenotype denotes shock http://purl.obolibrary.org/obo/HP_0031273