PMC:7299399 / 4598-6100
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T7 | 143-149 | Body_part | denotes | throat | http://purl.org/sig/ont/fma/fma228738 |
| T8 | 332-337 | Body_part | denotes | heart | http://purl.org/sig/ont/fma/fma7088 |
| T9 | 533-538 | Body_part | denotes | heart | http://purl.org/sig/ont/fma/fma7088 |
| T10 | 540-546 | Body_part | denotes | kidney | http://purl.org/sig/ont/fma/fma7203 |
| T11 | 548-551 | Body_part | denotes | eye | http://purl.org/sig/ont/fma/fma54448 |
| T12 | 574-579 | Body_part | denotes | brain | http://purl.org/sig/ont/fma/fma50801 |
| T13 | 761-767 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
| T14 | 1057-1062 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T15 | 1152-1157 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T16 | 1257-1264 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T17 | 1429-1436 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T2 | 143-149 | Body_part | denotes | throat | http://purl.obolibrary.org/obo/UBERON_0000341 |
| T3 | 332-337 | Body_part | denotes | heart | http://purl.obolibrary.org/obo/UBERON_0000948 |
| T4 | 514-520 | Body_part | denotes | organs | http://purl.obolibrary.org/obo/UBERON_0000062 |
| T5 | 533-538 | Body_part | denotes | heart | http://purl.obolibrary.org/obo/UBERON_0000948 |
| T6 | 540-546 | Body_part | denotes | kidney | http://purl.obolibrary.org/obo/UBERON_0002113 |
| T7 | 548-551 | Body_part | denotes | eye | http://purl.obolibrary.org/obo/UBERON_0000970 |
| T8 | 574-579 | Body_part | denotes | brain | http://purl.obolibrary.org/obo/UBERON_0000955 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T22 | 138-149 | Disease | denotes | sore throat | http://purl.obolibrary.org/obo/MONDO_0002258 |
| T23 | 161-169 | Disease | denotes | diarrhea | http://purl.obolibrary.org/obo/MONDO_0001673 |
| T24 | 295-307 | Disease | denotes | hypertension | http://purl.obolibrary.org/obo/MONDO_0005044 |
| T25 | 309-317 | Disease | denotes | diabetes | http://purl.obolibrary.org/obo/MONDO_0005015 |
| T26 | 323-345 | Disease | denotes | coronary heart disease | http://purl.obolibrary.org/obo/MONDO_0005010 |
| T27 | 332-345 | Disease | denotes | heart disease | http://purl.obolibrary.org/obo/MONDO_0005267 |
| T28 | 472-480 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T29 | 553-567 | Disease | denotes | conjunctivitis | http://purl.obolibrary.org/obo/MONDO_0003799 |
| T30 | 581-593 | Disease | denotes | encephalitis | http://purl.obolibrary.org/obo/MONDO_0019956 |
| T31 | 665-673 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T32 | 771-779 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T33 | 893-913 | Disease | denotes | respiratory diseases | http://purl.obolibrary.org/obo/MONDO_0005087 |
| T34 | 922-930 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T35 | 973-981 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T36 | 1269-1277 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T37 | 1480-1489 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T34 | 332-337 | http://purl.obolibrary.org/obo/UBERON_0000948 | denotes | heart |
| T35 | 332-337 | http://purl.obolibrary.org/obo/UBERON_0007100 | denotes | heart |
| T36 | 332-337 | http://purl.obolibrary.org/obo/UBERON_0015228 | denotes | heart |
| T37 | 332-337 | http://www.ebi.ac.uk/efo/EFO_0000815 | denotes | heart |
| T38 | 514-520 | http://purl.obolibrary.org/obo/UBERON_0003103 | denotes | organs |
| T39 | 533-538 | http://purl.obolibrary.org/obo/UBERON_0000948 | denotes | heart |
| T40 | 533-538 | http://purl.obolibrary.org/obo/UBERON_0007100 | denotes | heart |
| T41 | 533-538 | http://purl.obolibrary.org/obo/UBERON_0015228 | denotes | heart |
| T42 | 533-538 | http://www.ebi.ac.uk/efo/EFO_0000815 | denotes | heart |
| T43 | 540-546 | http://purl.obolibrary.org/obo/UBERON_0002113 | denotes | kidney |
| T44 | 540-546 | http://www.ebi.ac.uk/efo/EFO_0000927 | denotes | kidney |
| T45 | 540-546 | http://www.ebi.ac.uk/efo/EFO_0000929 | denotes | kidney |
| T46 | 548-551 | http://www.ebi.ac.uk/efo/EFO_0000827 | denotes | eye |
| T47 | 574-579 | http://purl.obolibrary.org/obo/UBERON_0000955 | denotes | brain |
| T48 | 574-579 | http://www.ebi.ac.uk/efo/EFO_0000302 | denotes | brain |
| T49 | 598-600 | http://purl.obolibrary.org/obo/CLO_0050510 | denotes | 18 |
| T50 | 782-785 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T51 | 819-820 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T52 | 854-859 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | genes |
| T53 | 992-993 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T54 | 1012-1017 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T55 | 1051-1062 | http://purl.obolibrary.org/obo/CLO_0053065 | denotes | human cells |
| T56 | 1152-1157 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T57 | 1251-1256 | http://purl.obolibrary.org/obo/CLO_0050050 | denotes | (S) 1 |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T15 | 627-632 | Chemical | denotes | drugs | http://purl.obolibrary.org/obo/CHEBI_23888 |
| T16 | 737-745 | Chemical | denotes | medicine | http://purl.obolibrary.org/obo/CHEBI_23888 |
| T17 | 1064-1075 | Chemical | denotes | angiotensin | http://purl.obolibrary.org/obo/CHEBI_48433 |
| T18 | 1094-1096 | Chemical | denotes | II | http://purl.obolibrary.org/obo/CHEBI_74067 |
| T19 | 1257-1264 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T20 | 1429-1436 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T5 | 6-11 | Phenotype | denotes | fever | http://purl.obolibrary.org/obo/HP_0001945 |
| T6 | 21-26 | Phenotype | denotes | cough | http://purl.obolibrary.org/obo/HP_0012735 |
| T7 | 40-47 | Phenotype | denotes | fatigue | http://purl.obolibrary.org/obo/HP_0012378 |
| T8 | 92-99 | Phenotype | denotes | dyspnea | http://purl.obolibrary.org/obo/HP_0002094 |
| T9 | 101-109 | Phenotype | denotes | headache | http://purl.obolibrary.org/obo/HP_0002315 |
| T10 | 138-149 | Phenotype | denotes | sore throat | http://purl.obolibrary.org/obo/HP_0033050 |
| T11 | 151-159 | Phenotype | denotes | vomiting | http://purl.obolibrary.org/obo/HP_0002013 |
| T12 | 161-169 | Phenotype | denotes | diarrhea | http://purl.obolibrary.org/obo/HP_0002014 |
| T13 | 171-181 | Phenotype | denotes | rhinorrhea | http://purl.obolibrary.org/obo/HP_0031417 |
| T14 | 187-201 | Phenotype | denotes | abdominal pain | http://purl.obolibrary.org/obo/HP_0002027 |
| T15 | 295-307 | Phenotype | denotes | hypertension | http://purl.obolibrary.org/obo/HP_0000822 |
| T16 | 553-567 | Phenotype | denotes | conjunctivitis | http://purl.obolibrary.org/obo/HP_0000509 |
| T17 | 581-593 | Phenotype | denotes | encephalitis | http://purl.obolibrary.org/obo/HP_0002383 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T7 | 1137-1143 | http://purl.obolibrary.org/obo/GO_0098739 | denotes | uptake |
| T8 | 1137-1143 | http://purl.obolibrary.org/obo/GO_0098657 | denotes | uptake |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T25 | 57-202 | Sentence | denotes | Other less common symptoms include dyspnea, headache, loss of appetite, panting, sore throat, vomiting, diarrhea, rhinorrhea, and abdominal pain. |
| T26 | 203-756 | Sentence | denotes | The severity of disease in patients depends mainly on the presence of comorbidities such as hypertension, diabetes, and coronary heart disease.12,13 The incubation period is reported to be between 5 and 14 days before disease onset.14 Recent reports indicate that some COVID-19 patients exhibit damage in other organs such as the heart, kidney, eye (conjunctivitis), and brain (encephalitis).15−18 The race is on to develop drugs and treatment options to combat COVID-19, harnessing all of the tools and technologies modern molecular medicine can offer. |
| T27 | 757-1166 | Sentence | denotes | The genome of SARS-CoV-2 has been fully sequenced19 and shows a high degree of similarity in key genes with other coronaviruses causing respiratory diseases such as SARS-CoV.20 Based on knowledge gathered during the SARS-CoV epidemic, a key target of the virus includes the surface receptor in human cells, angiotensin-converting enzyme II (ACE2), which is required for efficient uptake in host cells.19,21−23 |
| T28 | 1167-1291 | Sentence | denotes | The C-terminal domain (i.e., receptor-binding domain of the envelope-embedded spike (S) 1 protein) of SARS-CoV-2 binds ACE2. |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 83 | 230-238 | Species | denotes | patients | Tax:9606 |
| 84 | 481-489 | Species | denotes | patients | Tax:9606 |
| 86 | 6-11 | Disease | denotes | fever | MESH:D005334 |
| 87 | 21-26 | Disease | denotes | cough | MESH:D003371 |
| 88 | 40-47 | Disease | denotes | fatigue | MESH:D005221 |
| 89 | 92-99 | Disease | denotes | dyspnea | MESH:D004417 |
| 90 | 101-109 | Disease | denotes | headache | MESH:D006261 |
| 91 | 111-127 | Disease | denotes | loss of appetite | MESH:D001068 |
| 92 | 138-149 | Disease | denotes | sore throat | MESH:D010608 |
| 93 | 151-159 | Disease | denotes | vomiting | MESH:D014839 |
| 94 | 161-169 | Disease | denotes | diarrhea | MESH:D003967 |
| 95 | 171-181 | Disease | denotes | rhinorrhea | MESH:D012818 |
| 96 | 187-201 | Disease | denotes | abdominal pain | MESH:D015746 |
| 97 | 295-307 | Disease | denotes | hypertension | MESH:D006973 |
| 98 | 309-317 | Disease | denotes | diabetes | MESH:D003920 |
| 99 | 323-345 | Disease | denotes | coronary heart disease | MESH:D003324 |
| 100 | 472-480 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 101 | 553-567 | Disease | denotes | conjunctivitis | MESH:D003231 |
| 102 | 581-593 | Disease | denotes | encephalitis | MESH:D004660 |
| 103 | 665-673 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 111 | 1098-1102 | Gene | denotes | ACE2 | Gene:59272 |
| 112 | 771-781 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 113 | 871-884 | Species | denotes | coronaviruses | Tax:11118 |
| 114 | 922-930 | Species | denotes | SARS-CoV | Tax:694009 |
| 115 | 973-981 | Species | denotes | SARS-CoV | Tax:694009 |
| 116 | 1051-1056 | Species | denotes | human | Tax:9606 |
| 117 | 893-913 | Disease | denotes | respiratory diseases | MESH:D012140 |
| 128 | 1286-1290 | Gene | denotes | ACE2 | Gene:59272 |
| 129 | 1440-1444 | Gene | denotes | ACE2 | Gene:59272 |
| 136 | 1269-1279 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 137 | 1480-1489 | Disease | denotes | infection | MESH:D007239 |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32519842-31986264-158451 | 349-351 | 31986264 | denotes | 13 |
| 32519842-32150748-158452 | 435-437 | 32150748 | denotes | 14 |
| 32519842-32247212-158453 | 595-597 | 32247212 | denotes | 15 |
| 32519842-32015507-158454 | 806-808 | 32015507 | denotes | 19 |
| 32519842-32257431-158455 | 931-933 | 32257431 | denotes | 20 |
| 32519842-32015507-158456 | 1158-1160 | 32015507 | denotes | 19 |
| 32519842-32333836-158457 | 1161-1163 | 32333836 | denotes | 21 |
| 32519842-32142651-158458 | 1164-1166 | 32142651 | denotes | 23 |
| 32519842-32275855-158459 | 1401-1403 | 32275855 | denotes | 24 |