PMC:7295558 / 8568-10595
Annnotations
LitCovid-PMC-OGER-BB
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T79 | 21-24 | NCBITaxon:9606 | denotes | man |
| T80 | 72-78 | UBERON:0002048 | denotes | breath |
| T81 | 269-271 | GO:0005783 | denotes | ER |
| T82 | 277-288 | UBERON:0001004 | denotes | respiratory |
| T83 | 686-691 | UBERON:0002113 | denotes | renal |
| T84 | 809-813 | UBERON:0002084 | denotes | LVEF |
| T85 | 903-909 | UBERON:0003037 | denotes | septal |
| T86 | 925-940 | UBERON:0002134 | denotes | tricuspid valve |
| T87 | 953-962 | UBERON:0003126 | denotes | tricuspid |
| T88 | 1005-1010 | UBERON:0000178 | denotes | blood |
| T89 | 1223-1228 | UBERON:0001443 | denotes | chest |
| T90 | 1318-1329 | CHEBI:33282;CHEBI:33282 | denotes | antibiotics |
| T91 | 1375-1385 | SP_7 | denotes | SARS-CoV-2 |
| T92 | 1505-1510 | UBERON:0002113 | denotes | renal |
| T93 | 1833-1842 | UBERON:0000440 | denotes | tricuspid |
| T12596 | 21-24 | NCBITaxon:9606 | denotes | man |
| T93312 | 72-78 | UBERON:0002048 | denotes | breath |
| T39346 | 269-271 | GO:0005783 | denotes | ER |
| T74458 | 277-288 | UBERON:0001004 | denotes | respiratory |
| T9035 | 686-691 | UBERON:0002113 | denotes | renal |
| T3932 | 809-813 | UBERON:0002084 | denotes | LVEF |
| T73960 | 903-909 | UBERON:0003037 | denotes | septal |
| T79609 | 925-940 | UBERON:0002134 | denotes | tricuspid valve |
| T84473 | 953-962 | UBERON:0003126 | denotes | tricuspid |
| T50935 | 1005-1010 | UBERON:0000178 | denotes | blood |
| T77635 | 1223-1228 | UBERON:0001443 | denotes | chest |
| T45472 | 1318-1329 | CHEBI:33282;CHEBI:33282 | denotes | antibiotics |
| T39169 | 1375-1385 | SP_7 | denotes | SARS-CoV-2 |
| T10401 | 1505-1510 | UBERON:0002113 | denotes | renal |
| T26631 | 1833-1842 | UBERON:0000440 | denotes | tricuspid |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T20 | 482-488 | Body_part | denotes | mental | http://purl.org/sig/ont/fma/fma264279 |
| T21 | 903-940 | Body_part | denotes | septal leaflet of the tricuspid valve | http://purl.org/sig/ont/fma/fma7240 |
| T22 | 925-940 | Body_part | denotes | tricuspid valve | http://purl.org/sig/ont/fma/fma7234 |
| T23 | 1005-1010 | Body_part | denotes | blood | http://purl.org/sig/ont/fma/fma9670 |
| T24 | 1223-1228 | Body_part | denotes | chest | http://purl.org/sig/ont/fma/fma9576 |
| T25 | 1719-1725 | Body_part | denotes | mental | http://purl.org/sig/ont/fma/fma264279 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T11 | 925-940 | Body_part | denotes | tricuspid valve | http://purl.obolibrary.org/obo/UBERON_0002134 |
| T12 | 935-940 | Body_part | denotes | valve | http://purl.obolibrary.org/obo/UBERON_0003978 |
| T13 | 1005-1010 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
| T14 | 1223-1228 | Body_part | denotes | chest | http://purl.obolibrary.org/obo/UBERON_0001443 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T56 | 346-348 | Disease | denotes | he | http://purl.obolibrary.org/obo/MONDO_0017319 |
| T57 | 378-382 | Disease | denotes | ARDS | http://purl.obolibrary.org/obo/MONDO_0006502 |
| T58 | 559-561 | Disease | denotes | he | http://purl.obolibrary.org/obo/MONDO_0017319 |
| T59 | 575-578 | Disease | denotes | AKI | http://purl.obolibrary.org/obo/MONDO_0002492 |
| T60 | 584-590 | Disease | denotes | anuria | http://purl.obolibrary.org/obo/MONDO_0002476 |
| T61 | 953-976 | Disease | denotes | tricuspid regurgitation | http://purl.obolibrary.org/obo/MONDO_0002870 |
| T62 | 1090-1100 | Disease | denotes | infectious | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T63 | 1101-1113 | Disease | denotes | endocarditis | http://purl.obolibrary.org/obo/MONDO_0005025 |
| T64 | 1273-1282 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
| T65 | 1375-1383 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T98 | 7-8 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T99 | 40-41 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T100 | 167-168 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T101 | 367-368 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T102 | 388-389 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T103 | 730-731 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T104 | 764-765 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T105 | 832-833 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T106 | 857-858 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T107 | 935-940 | http://www.ebi.ac.uk/efo/EFO_0000825 | denotes | valve |
| T108 | 1005-1010 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | blood |
| T109 | 1005-1010 | http://www.ebi.ac.uk/efo/EFO_0000296 | denotes | blood |
| T110 | 1199-1200 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T111 | 1223-1228 | http://www.ebi.ac.uk/efo/EFO_0000965 | denotes | chest |
| T112 | 1236-1237 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T113 | 1358-1359 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T114 | 1737-1738 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T115 | 1800-1801 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T116 | 1866-1867 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | b |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T35 | 1318-1329 | Chemical | denotes | antibiotics | http://purl.obolibrary.org/obo/CHEBI_33281 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T107 | 0-6 | Sentence | denotes | Case 3 |
| T108 | 7-100 | Sentence | denotes | A 66-year-old man presented with a 5-day history of shortness of breath, fever and dry cough. |
| T109 | 101-147 | Sentence | denotes | His previous medical history was unremarkable. |
| T110 | 148-248 | Sentence | denotes | He reported having a family member that had traveled to the United States during the previous month. |
| T111 | 249-312 | Sentence | denotes | He presented to the ER with respiratory insufficiency syndrome. |
| T112 | 313-423 | Sentence | denotes | During his first day in the ICU, he was classified as a moderate ARDS with a PaO2/FiO2 ratio of 180 (Table 1). |
| T113 | 424-540 | Sentence | denotes | He was initially managed with HFNC and, due to an altered mental state, was then intubated using video laryngoscopy. |
| T114 | 541-643 | Sentence | denotes | On his third day, he developed an AKI with anuria and septic shock that was treated with vasopressors. |
| T115 | 644-763 | Sentence | denotes | On his fourth day, prolonged intermittent renal replacement therapy was started using a non-tunneled dialysis catheter. |
| T116 | 764-987 | Sentence | denotes | A TTE was done on his eighth day, showing an LVEF of 65% (Table 2), a mobile vegetation with a size of 12 × 10 mm that was attached to the septal leaflet of the tricuspid valve, and severe tricuspid regurgitation (Fig. 1a). |
| T117 | 988-1057 | Sentence | denotes | Four consecutive blood cultures were performed and all were negative. |
| T118 | 1058-1127 | Sentence | denotes | No other of Duke’s criteria for infectious endocarditis were present. |
| T119 | 1128-1235 | Sentence | denotes | On his 14th day in the ICU, fever was again identified, accompanied by a new infiltrate on his chest X-ray. |
| T120 | 1236-1343 | Sentence | denotes | A diagnosis of ventilator-associated pneumonia was established and broad-spectrum antibiotics were started. |
| T121 | 1344-1426 | Sentence | denotes | At this time, a new RT-PCR for SARS-CoV-2 was performed, which was still positive. |
| T122 | 1427-1650 | Sentence | denotes | During his 22nd day in the ICU, the patient was still intubated, dependent of renal replacement therapy (RRT) and vasopressor support, with altered mentation (unarousable) during his unsuccessful ventilation weaning trials. |
| T123 | 1651-1788 | Sentence | denotes | He was being considered for an electroencephalogram to evaluate his mental status and a tracheostomy because of his prolonged intubation. |
| T124 | 1789-2027 | Sentence | denotes | Figure 1 (a) Modified a4c view showing the tricuspid vegetation of case 3. (b) Peak GLS showing decreased values in the inferolateral and inferoseptal territories of case 4. a4C: apical four-chamber view; GLS: global longitudinal strain. |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T30 | 59-78 | Phenotype | denotes | shortness of breath | http://purl.obolibrary.org/obo/HP_0002098 |
| T31 | 80-85 | Phenotype | denotes | fever | http://purl.obolibrary.org/obo/HP_0001945 |
| T32 | 90-99 | Phenotype | denotes | dry cough | http://purl.obolibrary.org/obo/HP_0031246 |
| T33 | 277-302 | Phenotype | denotes | respiratory insufficiency | http://purl.obolibrary.org/obo/HP_0002093 |
| T34 | 575-578 | Phenotype | denotes | AKI | http://purl.obolibrary.org/obo/HP_0001919 |
| T35 | 584-590 | Phenotype | denotes | anuria | http://purl.obolibrary.org/obo/HP_0100519 |
| T36 | 602-607 | Phenotype | denotes | shock | http://purl.obolibrary.org/obo/HP_0031273 |
| T37 | 953-976 | Phenotype | denotes | tricuspid regurgitation | http://purl.obolibrary.org/obo/HP_0005180 |
| T38 | 1101-1113 | Phenotype | denotes | endocarditis | http://purl.obolibrary.org/obo/HP_0100584 |
| T39 | 1156-1161 | Phenotype | denotes | fever | http://purl.obolibrary.org/obo/HP_0001945 |
| T40 | 1273-1282 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 163 | 1375-1385 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 164 | 1463-1470 | Species | denotes | patient | Tax:9606 |
| 165 | 59-78 | Disease | denotes | shortness of breath | MESH:D004417 |
| 166 | 80-85 | Disease | denotes | fever | MESH:D005334 |
| 167 | 90-99 | Disease | denotes | dry cough | MESH:D003371 |
| 168 | 277-311 | Disease | denotes | respiratory insufficiency syndrome | MESH:D012131 |
| 169 | 378-382 | Disease | denotes | ARDS | MESH:D012128 |
| 170 | 584-590 | Disease | denotes | anuria | MESH:D001002 |
| 171 | 595-607 | Disease | denotes | septic shock | MESH:D012772 |
| 172 | 953-976 | Disease | denotes | tricuspid regurgitation | MESH:D014262 |
| 173 | 1090-1113 | Disease | denotes | infectious endocarditis | MESH:D004696 |
| 174 | 1156-1161 | Disease | denotes | fever | MESH:D005334 |
| 175 | 1273-1282 | Disease | denotes | pneumonia | MESH:D011014 |