PMC:7295558 / 5118-5772 JSONTXT

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T6","span":{"begin":115,"end":123},"obj":"Body_part"},{"id":"T7","span":{"begin":132,"end":135},"obj":"Body_part"},{"id":"T8","span":{"begin":148,"end":164},"obj":"Body_part"},{"id":"T9","span":{"begin":160,"end":164},"obj":"Body_part"},{"id":"T10","span":{"begin":198,"end":209},"obj":"Body_part"},{"id":"T11","span":{"begin":241,"end":246},"obj":"Body_part"},{"id":"T12","span":{"begin":337,"end":344},"obj":"Body_part"}],"attributes":[{"id":"A6","pred":"fma_id","subj":"T6","obj":"http://purl.org/sig/ont/fma/fma9600"},{"id":"A7","pred":"fma_id","subj":"T7","obj":"http://purl.org/sig/ont/fma/fma278683"},{"id":"A8","pred":"fma_id","subj":"T8","obj":"http://purl.org/sig/ont/fma/fma62852"},{"id":"A9","pred":"fma_id","subj":"T9","obj":"http://purl.org/sig/ont/fma/fma68646"},{"id":"A10","pred":"fma_id","subj":"T10","obj":"http://purl.org/sig/ont/fma/fma62863"},{"id":"A11","pred":"fma_id","subj":"T11","obj":"http://purl.org/sig/ont/fma/fma63083"},{"id":"A12","pred":"fma_id","subj":"T12","obj":"http://purl.org/sig/ont/fma/fma82749"}],"text":"Variable Case 1 Case 2 Case 3 Case 4\nGender Male Male Male Male\nAge (years) 76 64 66 26\nComorbidities Prostate cancer HIV None None\nWhite blood cell count, /µL 11.2 8.6 14.3 8.1\nLymphocytes, /µL 0.306 0.483 0.563 1.4\nSerum creatinine, mg/dL 0.9 0.9 5.3 0.8\nAminotransferase\n  Aspartate, U/L 44 96 99 68\n  Alanine, U/L 40 108 43 85\n  Albumin, g/dL 2.1 2 2.7 3.4\n  hs-CRP, mg/dL 27 20.6 23.1 11.3\n  ARDS Yes Yes Yes Yes\n  PaO2/FiO2 ratio 59 66 180 258\nCardiac injury markers\n  hs-TpnI, ng/L 2.8 5.4 5.6 1.4\n  CK, U/L 721 868 517 50\n  CK-MB, U/L 29 35.3 26.5 n/a\n  LDH, U/L 312 259 424 317"}

{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T6","span":{"begin":154,"end":159},"obj":"Body_part"},{"id":"T7","span":{"begin":241,"end":246},"obj":"Body_part"}],"attributes":[{"id":"A6","pred":"uberon_id","subj":"T6","obj":"http://purl.obolibrary.org/obo/UBERON_0000178"},{"id":"A7","pred":"uberon_id","subj":"T7","obj":"http://purl.obolibrary.org/obo/UBERON_0001977"}],"text":"Variable Case 1 Case 2 Case 3 Case 4\nGender Male Male Male Male\nAge (years) 76 64 66 26\nComorbidities Prostate cancer HIV None None\nWhite blood cell count, /µL 11.2 8.6 14.3 8.1\nLymphocytes, /µL 0.306 0.483 0.563 1.4\nSerum creatinine, mg/dL 0.9 0.9 5.3 0.8\nAminotransferase\n  Aspartate, U/L 44 96 99 68\n  Alanine, U/L 40 108 43 85\n  Albumin, g/dL 2.1 2 2.7 3.4\n  hs-CRP, mg/dL 27 20.6 23.1 11.3\n  ARDS Yes Yes Yes Yes\n  PaO2/FiO2 ratio 59 66 180 258\nCardiac injury markers\n  hs-TpnI, ng/L 2.8 5.4 5.6 1.4\n  CK, U/L 721 868 517 50\n  CK-MB, U/L 29 35.3 26.5 n/a\n  LDH, U/L 312 259 424 317"}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T39","span":{"begin":115,"end":130},"obj":"Disease"},{"id":"T40","span":{"begin":124,"end":130},"obj":"Disease"},{"id":"T41","span":{"begin":441,"end":445},"obj":"Disease"},{"id":"T42","span":{"begin":510,"end":516},"obj":"Disease"},{"id":"T43","span":{"begin":563,"end":565},"obj":"Disease"},{"id":"T44","span":{"begin":592,"end":594},"obj":"Disease"}],"attributes":[{"id":"A39","pred":"mondo_id","subj":"T39","obj":"http://purl.obolibrary.org/obo/MONDO_0008315"},{"id":"A40","pred":"mondo_id","subj":"T40","obj":"http://purl.obolibrary.org/obo/MONDO_0004992"},{"id":"A41","pred":"mondo_id","subj":"T41","obj":"http://purl.obolibrary.org/obo/MONDO_0006502"},{"id":"A42","pred":"mondo_id","subj":"T42","obj":"http://purl.obolibrary.org/obo/MONDO_0021178"},{"id":"A43","pred":"mondo_id","subj":"T43","obj":"http://purl.obolibrary.org/obo/MONDO_0017941"},{"id":"A44","pred":"mondo_id","subj":"T44","obj":"http://purl.obolibrary.org/obo/MONDO_0017941"}],"text":"Variable Case 1 Case 2 Case 3 Case 4\nGender Male Male Male Male\nAge (years) 76 64 66 26\nComorbidities Prostate cancer HIV None None\nWhite blood cell count, /µL 11.2 8.6 14.3 8.1\nLymphocytes, /µL 0.306 0.483 0.563 1.4\nSerum creatinine, mg/dL 0.9 0.9 5.3 0.8\nAminotransferase\n  Aspartate, U/L 44 96 99 68\n  Alanine, U/L 40 108 43 85\n  Albumin, g/dL 2.1 2 2.7 3.4\n  hs-CRP, mg/dL 27 20.6 23.1 11.3\n  ARDS Yes Yes Yes Yes\n  PaO2/FiO2 ratio 59 66 180 258\nCardiac injury markers\n  hs-TpnI, ng/L 2.8 5.4 5.6 1.4\n  CK, U/L 721 868 517 50\n  CK-MB, U/L 29 35.3 26.5 n/a\n  LDH, U/L 312 259 424 317"}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T45","span":{"begin":49,"end":53},"obj":"http://purl.obolibrary.org/obo/UBERON_0003101"},{"id":"T46","span":{"begin":49,"end":53},"obj":"http://www.ebi.ac.uk/efo/EFO_0000970"},{"id":"T47","span":{"begin":55,"end":59},"obj":"http://purl.obolibrary.org/obo/UBERON_0003101"},{"id":"T48","span":{"begin":55,"end":59},"obj":"http://www.ebi.ac.uk/efo/EFO_0000970"},{"id":"T49","span":{"begin":61,"end":65},"obj":"http://purl.obolibrary.org/obo/UBERON_0003101"},{"id":"T50","span":{"begin":61,"end":65},"obj":"http://www.ebi.ac.uk/efo/EFO_0000970"},{"id":"T51","span":{"begin":67,"end":71},"obj":"http://purl.obolibrary.org/obo/UBERON_0003101"},{"id":"T52","span":{"begin":67,"end":71},"obj":"http://www.ebi.ac.uk/efo/EFO_0000970"},{"id":"T53","span":{"begin":154,"end":159},"obj":"http://www.ebi.ac.uk/efo/EFO_0000296"},{"id":"T54","span":{"begin":160,"end":164},"obj":"http://purl.obolibrary.org/obo/GO_0005623"},{"id":"T55","span":{"begin":418,"end":420},"obj":"http://purl.obolibrary.org/obo/CLO_0050509"},{"id":"T56","span":{"begin":595,"end":597},"obj":"http://purl.obolibrary.org/obo/PR_000010213"},{"id":"T57","span":{"begin":622,"end":623},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"}],"text":"Variable Case 1 Case 2 Case 3 Case 4\nGender Male Male Male Male\nAge (years) 76 64 66 26\nComorbidities Prostate cancer HIV None None\nWhite blood cell count, /µL 11.2 8.6 14.3 8.1\nLymphocytes, /µL 0.306 0.483 0.563 1.4\nSerum creatinine, mg/dL 0.9 0.9 5.3 0.8\nAminotransferase\n  Aspartate, U/L 44 96 99 68\n  Alanine, U/L 40 108 43 85\n  Albumin, g/dL 2.1 2 2.7 3.4\n  hs-CRP, mg/dL 27 20.6 23.1 11.3\n  ARDS Yes Yes Yes Yes\n  PaO2/FiO2 ratio 59 66 180 258\nCardiac injury markers\n  hs-TpnI, ng/L 2.8 5.4 5.6 1.4\n  CK, U/L 721 868 517 50\n  CK-MB, U/L 29 35.3 26.5 n/a\n  LDH, U/L 312 259 424 317"}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T13","span":{"begin":247,"end":257},"obj":"Chemical"},{"id":"T14","span":{"begin":337,"end":344},"obj":"Chemical"}],"attributes":[{"id":"A13","pred":"chebi_id","subj":"T13","obj":"http://purl.obolibrary.org/obo/CHEBI_16737"},{"id":"A14","pred":"chebi_id","subj":"T14","obj":"http://purl.obolibrary.org/obo/CHEBI_16449"}],"text":"Variable Case 1 Case 2 Case 3 Case 4\nGender Male Male Male Male\nAge (years) 76 64 66 26\nComorbidities Prostate cancer HIV None None\nWhite blood cell count, /µL 11.2 8.6 14.3 8.1\nLymphocytes, /µL 0.306 0.483 0.563 1.4\nSerum creatinine, mg/dL 0.9 0.9 5.3 0.8\nAminotransferase\n  Aspartate, U/L 44 96 99 68\n  Alanine, U/L 40 108 43 85\n  Albumin, g/dL 2.1 2 2.7 3.4\n  hs-CRP, mg/dL 27 20.6 23.1 11.3\n  ARDS Yes Yes Yes Yes\n  PaO2/FiO2 ratio 59 66 180 258\nCardiac injury markers\n  hs-TpnI, ng/L 2.8 5.4 5.6 1.4\n  CK, U/L 721 868 517 50\n  CK-MB, U/L 29 35.3 26.5 n/a\n  LDH, U/L 312 259 424 317"}

{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T4","span":{"begin":592,"end":597},"obj":"http://purl.obolibrary.org/obo/GO_0004111"}],"text":"Variable Case 1 Case 2 Case 3 Case 4\nGender Male Male Male Male\nAge (years) 76 64 66 26\nComorbidities Prostate cancer HIV None None\nWhite blood cell count, /µL 11.2 8.6 14.3 8.1\nLymphocytes, /µL 0.306 0.483 0.563 1.4\nSerum creatinine, mg/dL 0.9 0.9 5.3 0.8\nAminotransferase\n  Aspartate, U/L 44 96 99 68\n  Alanine, U/L 40 108 43 85\n  Albumin, g/dL 2.1 2 2.7 3.4\n  hs-CRP, mg/dL 27 20.6 23.1 11.3\n  ARDS Yes Yes Yes Yes\n  PaO2/FiO2 ratio 59 66 180 258\nCardiac injury markers\n  hs-TpnI, ng/L 2.8 5.4 5.6 1.4\n  CK, U/L 721 868 517 50\n  CK-MB, U/L 29 35.3 26.5 n/a\n  LDH, U/L 312 259 424 317"}

{"project":"LitCovid-sentences","denotations":[{"id":"T50","span":{"begin":0,"end":40},"obj":"Sentence"},{"id":"T51","span":{"begin":41,"end":71},"obj":"Sentence"},{"id":"T52","span":{"begin":72,"end":99},"obj":"Sentence"},{"id":"T53","span":{"begin":100,"end":147},"obj":"Sentence"},{"id":"T54","span":{"begin":148,"end":197},"obj":"Sentence"},{"id":"T55","span":{"begin":198,"end":240},"obj":"Sentence"},{"id":"T56","span":{"begin":241,"end":284},"obj":"Sentence"},{"id":"T57","span":{"begin":285,"end":301},"obj":"Sentence"},{"id":"T58","span":{"begin":302,"end":334},"obj":"Sentence"},{"id":"T59","span":{"begin":335,"end":366},"obj":"Sentence"},{"id":"T60","span":{"begin":367,"end":400},"obj":"Sentence"},{"id":"T61","span":{"begin":401,"end":438},"obj":"Sentence"},{"id":"T62","span":{"begin":439,"end":465},"obj":"Sentence"},{"id":"T63","span":{"begin":466,"end":501},"obj":"Sentence"},{"id":"T64","span":{"begin":502,"end":524},"obj":"Sentence"},{"id":"T65","span":{"begin":525,"end":560},"obj":"Sentence"},{"id":"T66","span":{"begin":561,"end":589},"obj":"Sentence"},{"id":"T67","span":{"begin":590,"end":623},"obj":"Sentence"},{"id":"T68","span":{"begin":624,"end":654},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Variable Case 1 Case 2 Case 3 Case 4\nGender Male Male Male Male\nAge (years) 76 64 66 26\nComorbidities Prostate cancer HIV None None\nWhite blood cell count, /µL 11.2 8.6 14.3 8.1\nLymphocytes, /µL 0.306 0.483 0.563 1.4\nSerum creatinine, mg/dL 0.9 0.9 5.3 0.8\nAminotransferase\n  Aspartate, U/L 44 96 99 68\n  Alanine, U/L 40 108 43 85\n  Albumin, g/dL 2.1 2 2.7 3.4\n  hs-CRP, mg/dL 27 20.6 23.1 11.3\n  ARDS Yes Yes Yes Yes\n  PaO2/FiO2 ratio 59 66 180 258\nCardiac injury markers\n  hs-TpnI, ng/L 2.8 5.4 5.6 1.4\n  CK, U/L 721 868 517 50\n  CK-MB, U/L 29 35.3 26.5 n/a\n  LDH, U/L 312 259 424 317"}

{"project":"LitCovid-PD-HP","denotations":[{"id":"T19","span":{"begin":115,"end":130},"obj":"Phenotype"}],"attributes":[{"id":"A19","pred":"hp_id","subj":"T19","obj":"http://purl.obolibrary.org/obo/HP_0012125"}],"text":"Variable Case 1 Case 2 Case 3 Case 4\nGender Male Male Male Male\nAge (years) 76 64 66 26\nComorbidities Prostate cancer HIV None None\nWhite blood cell count, /µL 11.2 8.6 14.3 8.1\nLymphocytes, /µL 0.306 0.483 0.563 1.4\nSerum creatinine, mg/dL 0.9 0.9 5.3 0.8\nAminotransferase\n  Aspartate, U/L 44 96 99 68\n  Alanine, U/L 40 108 43 85\n  Albumin, g/dL 2.1 2 2.7 3.4\n  hs-CRP, mg/dL 27 20.6 23.1 11.3\n  ARDS Yes Yes Yes Yes\n  PaO2/FiO2 ratio 59 66 180 258\nCardiac injury markers\n  hs-TpnI, ng/L 2.8 5.4 5.6 1.4\n  CK, U/L 721 868 517 50\n  CK-MB, U/L 29 35.3 26.5 n/a\n  LDH, U/L 312 259 424 317"}

{"project":"LitCovid-PubTator","denotations":[{"id":"113","span":{"begin":406,"end":409},"obj":"Gene"},{"id":"114","span":{"begin":592,"end":594},"obj":"Gene"},{"id":"115","span":{"begin":563,"end":565},"obj":"Gene"},{"id":"116","span":{"begin":247,"end":257},"obj":"Chemical"},{"id":"117","span":{"begin":115,"end":135},"obj":"Disease"},{"id":"118","span":{"begin":441,"end":445},"obj":"Disease"},{"id":"119","span":{"begin":502,"end":516},"obj":"Disease"}],"attributes":[{"id":"A113","pred":"tao:has_database_id","subj":"113","obj":"Gene:1401"},{"id":"A114","pred":"tao:has_database_id","subj":"114","obj":"Gene:51727"},{"id":"A115","pred":"tao:has_database_id","subj":"115","obj":"Gene:51727"},{"id":"A116","pred":"tao:has_database_id","subj":"116","obj":"MESH:D003404"},{"id":"A117","pred":"tao:has_database_id","subj":"117","obj":"MESH:D011471"},{"id":"A118","pred":"tao:has_database_id","subj":"118","obj":"MESH:D012128"},{"id":"A119","pred":"tao:has_database_id","subj":"119","obj":"MESH:D006331"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"Variable Case 1 Case 2 Case 3 Case 4\nGender Male Male Male Male\nAge (years) 76 64 66 26\nComorbidities Prostate cancer HIV None None\nWhite blood cell count, /µL 11.2 8.6 14.3 8.1\nLymphocytes, /µL 0.306 0.483 0.563 1.4\nSerum creatinine, mg/dL 0.9 0.9 5.3 0.8\nAminotransferase\n  Aspartate, U/L 44 96 99 68\n  Alanine, U/L 40 108 43 85\n  Albumin, g/dL 2.1 2 2.7 3.4\n  hs-CRP, mg/dL 27 20.6 23.1 11.3\n  ARDS Yes Yes Yes Yes\n  PaO2/FiO2 ratio 59 66 180 258\nCardiac injury markers\n  hs-TpnI, ng/L 2.8 5.4 5.6 1.4\n  CK, U/L 721 868 517 50\n  CK-MB, U/L 29 35.3 26.5 n/a\n  LDH, U/L 312 259 424 317"}