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PMC:7291971 / 88142-88950 JSONTXT

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LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T1732 192-200 SP_10 denotes SARS-CoV
T1733 300-304 CHEBI:24870;CHEBI:24870 denotes ions
T1734 327-335 SP_10 denotes SARS-CoV
T1735 336-341 PR:000000125 denotes nsp14
T92593 327-335 SP_10 denotes SARS-CoV
T15931 336-341 PR:000000125 denotes nsp14
T4088 192-200 SP_10 denotes SARS-CoV
T99586 300-304 CHEBI:24870;CHEBI:24870 denotes ions
T11834 327-335 SP_10 denotes SARS-CoV
T76206 336-341 PR:000000125 denotes nsp14

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T117 342-349 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T118 463-470 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T119 734-736 Body_part denotes Å3 http://purl.org/sig/ont/fma/fma66599

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1647 504-513 Chemical denotes hydrogens MESH:D006859

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T105 192-200 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T106 327-335 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T456 102-103 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T457 122-123 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T458 230-231 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T459 622-623 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T460 700-701 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T461 734-736 http://purl.obolibrary.org/obo/CLO_0001577 denotes Å3

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T994 85-87 Chemical denotes La http://purl.obolibrary.org/obo/CHEBI_33336
T995 285-291 Chemical denotes ligand http://purl.obolibrary.org/obo/CHEBI_52214
T996 292-295 Chemical denotes SAM http://purl.obolibrary.org/obo/CHEBI_15414|http://purl.obolibrary.org/obo/CHEBI_67040
T998 300-304 Chemical denotes ions http://purl.obolibrary.org/obo/CHEBI_24870
T999 342-349 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T1000 380-386 Chemical denotes ligand http://purl.obolibrary.org/obo/CHEBI_52214
T1001 463-470 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T1002 475-481 Chemical denotes ligand http://purl.obolibrary.org/obo/CHEBI_52214

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T582 0-153 Sentence denotes All calculations were performed using Autodock vina (The Scripps Research Institute, La Jolla, CA) on a MSI computer with a 2.30 GHz Intel Core i5-8300H.
T583 154-260 Sentence denotes The solved X-ray crystal structure of SARS-CoV nsp14 (PDB 5C8T) was used as a static receptor for docking.
T584 261-375 Sentence denotes Both the co-crystalized ligand SAM and ions were removed from the SARS-CoV nsp14 protein using VMD 1.9.3 software.
T585 376-453 Sentence denotes The ligand structures were drawn and minimized using MarvinSketch (ChemAxon).
T586 454-590 Sentence denotes Targeted protein and ligand structures with polar hydrogens were converted to the required PDBQT format using MGL Tools (version 1.5.6).
T587 591-737 Sentence denotes The docking was performed with a search box located at x = −11.155, y = −40.77, z = −3.688 coordinates, with a search box size of 25 × 25 × 25 Å3.
T588 738-808 Sentence denotes After calculations, PDB files were analyzed using Pymol (version 2.3).