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PMC:7289100 / 38203-41228 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T116 913-922 Body_part denotes endosomal http://purl.org/sig/ont/fma/fma67180
T117 1026-1040 Body_part denotes cell membranes http://purl.org/sig/ont/fma/fma63841
T118 1026-1030 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T119 1200-1204 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T120 1293-1308 Body_part denotes early endosomes http://purl.org/sig/ont/fma/fma67463
T121 1374-1380 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T122 2736-2741 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T123 2745-2751 Body_part denotes plasma http://purl.org/sig/ont/fma/fma62970
T124 2842-2848 Body_part denotes plasma http://purl.org/sig/ont/fma/fma62970
T125 2852-2857 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T52 2736-2741 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T53 2852-2857 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T461 42-50 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T462 51-60 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T463 141-149 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T464 326-343 Disease denotes rheumatic disease http://purl.obolibrary.org/obo/MONDO_0005554
T465 355-363 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T466 459-478 Disease denotes autoimmune diseases http://purl.obolibrary.org/obo/MONDO_0007179
T467 488-516 Disease denotes systemic lupus erythematosus http://purl.obolibrary.org/obo/MONDO_0007915
T468 497-516 Disease denotes lupus erythematosus http://purl.obolibrary.org/obo/MONDO_0004670
T469 518-521 Disease denotes SLE http://purl.obolibrary.org/obo/MONDO_0007915
T470 527-547 Disease denotes rheumatoid arthritis http://purl.obolibrary.org/obo/MONDO_0008383
T471 538-547 Disease denotes arthritis http://purl.obolibrary.org/obo/MONDO_0005578
T472 549-551 Disease denotes RA http://purl.obolibrary.org/obo/MONDO_0005272|http://purl.obolibrary.org/obo/MONDO_0008383
T474 854-862 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T475 952-999 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T476 952-985 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T477 1001-1009 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T478 1001-1005 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T479 1184-1192 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T480 1184-1188 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T481 1277-1285 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T482 1277-1281 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T483 1461-1469 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T484 1461-1465 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T485 2098-2106 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T486 2098-2102 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T487 2109-2118 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T488 2676-2684 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T489 2772-2789 Disease denotes rheumatic disease http://purl.obolibrary.org/obo/MONDO_0005554
T490 2925-2933 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T491 2925-2929 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T285 80-93 http://purl.obolibrary.org/obo/OBI_0000245 denotes organizations
T286 647-650 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T287 1026-1030 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T288 1031-1040 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membranes
T289 1200-1204 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T290 1429-1437 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T291 1492-1495 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T292 1600-1601 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T293 1684-1685 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T294 1709-1710 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T295 1754-1760 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T296 2156-2157 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T297 2169-2170 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T298 2288-2289 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T299 2376-2377 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T300 2545-2548 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T301 2556-2557 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T302 2610-2613 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T303 2745-2751 http://purl.obolibrary.org/obo/UBERON_0001969 denotes plasma
T304 2842-2848 http://purl.obolibrary.org/obo/UBERON_0001969 denotes plasma
T305 3009-3012 http://purl.obolibrary.org/obo/CLO_0053794 denotes 4/1

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T147 33-38 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888
T148 384-395 Chemical denotes Chloroquine http://purl.obolibrary.org/obo/CHEBI_3638
T149 438-443 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888
T150 549-551 Chemical denotes RA http://purl.obolibrary.org/obo/CHEBI_73810
T151 559-570 Chemical denotes chloroquine http://purl.obolibrary.org/obo/CHEBI_3638
T152 575-593 Chemical denotes hydroxychloroquine http://purl.obolibrary.org/obo/CHEBI_5801
T153 753-757 Chemical denotes drug http://purl.obolibrary.org/obo/CHEBI_23888
T154 758-762 Chemical denotes drug http://purl.obolibrary.org/obo/CHEBI_23888
T155 781-792 Chemical denotes chloroquine http://purl.obolibrary.org/obo/CHEBI_3638
T156 871-876 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888
T157 1055-1066 Chemical denotes Chloroquine http://purl.obolibrary.org/obo/CHEBI_3638
T158 1106-1117 Chemical denotes angiotensin http://purl.obolibrary.org/obo/CHEBI_48433
T159 1230-1241 Chemical denotes chloroquine http://purl.obolibrary.org/obo/CHEBI_3638
T160 1441-1452 Chemical denotes chloroquine http://purl.obolibrary.org/obo/CHEBI_3638
T161 1857-1867 Chemical denotes colchicine http://purl.obolibrary.org/obo/CHEBI_23359
T162 1962-1966 Chemical denotes drug http://purl.obolibrary.org/obo/CHEBI_23888
T163 2290-2295 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T164 2653-2664 Chemical denotes chloroquine http://purl.obolibrary.org/obo/CHEBI_3638
T165 2989-2998 Chemical denotes antiviral http://purl.obolibrary.org/obo/CHEBI_22587

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T205 459-478 Phenotype denotes autoimmune diseases http://purl.obolibrary.org/obo/HP_0002960
T206 488-516 Phenotype denotes systemic lupus erythematosus http://purl.obolibrary.org/obo/HP_0002725
T207 518-521 Phenotype denotes SLE http://purl.obolibrary.org/obo/HP_0002725
T208 527-547 Phenotype denotes rheumatoid arthritis http://purl.obolibrary.org/obo/HP_0001370
T209 549-551 Phenotype denotes RA http://purl.obolibrary.org/obo/HP_0001370
T210 717-741 Phenotype denotes prolong the QTc interval http://purl.obolibrary.org/obo/HP_0005184

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T17 1076-1089 http://purl.obolibrary.org/obo/GO_0070085 denotes glycosylation
T18 1264-1273 http://purl.obolibrary.org/obo/GO_0006810 denotes transport

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T234 0-60 Sentence denotes 9 Therapy - using rheumatologic drugs in COVID-19 infection
T235 61-159 Sentence denotes Many countries and organizations have published guidelines for treatment of the COVID-19 pandemic.
T236 160-383 Sentence denotes Of note are the Treatment Guidelines of the National Institutes of Health and the American College of Rheumatology guidance for the management of adult patients with rheumatic disease during the COVID-19 pandemic [102,103].
T237 384-553 Sentence denotes Chloroquine and Hydroxychloroquine, are anti malarial drugs, used to treat autoimmune diseases, such as systemic lupus erythematosus (SLE) and rheumatoid arthritis (RA).
T238 554-630 Sentence denotes Both chloroquine and hydroxychloroquine (HCQ) have immunomodulatory effects.
T239 631-793 Sentence denotes In general, HCQ has fewer and less severe toxicities (including fewer propensities to prolong the QTc interval) and fewer drug-drug interactions than chloroquine.
T240 794-1041 Sentence denotes The proposed mechanisms of action and rationale for use for COVID-19 of both drugs have to do with the increase of the endosomal pH, inhibiting fusion of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) and the host cell membranes.
T241 1042-1214 Sentence denotes Furthermore, Chloroquine inhibits glycosylation of the cellular angiotensin-converting enzyme 2 receptor, which may interfere with binding of SARS-CoV to the cell receptor.
T242 1215-1480 Sentence denotes In vitro, both chloroquine and HCQ may block the transport of SARS-CoV-2 from early endosomes to endolysosomes, which may be required for release of the viral genome, and several studies have demonstrated in vitro activity of chloroquine against SARS-CoV [104,105].
T243 1481-1596 Sentence denotes Though HCQ has been administered to patients with Covid-19 there are to date no robust evidence supporting its use.
T244 1597-1868 Sentence denotes In a retrospective computerized database of 1317 positive subjects for Covid-19 out of a sample size of 14,520, a comparison was conducted between those who tested positive versus those who were found negative, in terms of the rate of administration of HCQ or colchicine.
T245 1869-2125 Sentence denotes The authors did not find any significant difference in terms of the rates of usage of either drug, thus they concluded that their findings raise doubts regarding the protective role of both these medication in the battle against SARS-CoV-2 infection [106].
T246 2126-2204 Sentence denotes Similar results were drawn by a study from a large medical center in New York.
T247 2205-2325 Sentence denotes The authors examined the association between HCQ use and intubation or death among a group of 1446 consecutive patients.
T248 2326-2444 Sentence denotes HCQ administration was not associated with either a greatly lowered or an increased risk of intubation or death [107].
T249 2445-2695 Sentence denotes Many similar reports came to the same conclusions [[108], [109], [110]], to the extent that the FDA has issued a safety alert and the American College of Physicians has as well recommended against the use of chloroquine or HCQ for COVID-19 [111,112].
T250 2696-3025 Sentence denotes Furthermore, an attempt to evaluate HCQ serum or plasma levels from various rheumatic disease patients receiving this treatment, found that these plasma or serum levels were unlikely to achieve the concentration shown to inhibit SARS-CoV-2 in vitro (average target 0.48 mg/L as opposed to the antiviral target of 4/1 mg/L) [113].

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T506 33-38 CHEBI:23888;CHEBI:23888 denotes drugs
T507 42-50 SP_7 denotes COVID-19
T508 141-149 SP_7 denotes COVID-19
T509 306-311 UBERON:0007023 denotes adult
T510 355-363 SP_7 denotes COVID-19
T511 384-395 CHEBI:3638;DG_10;CHEBI:3638 denotes Chloroquine
T512 400-418 CHEBI:5801;DG_20;CHEBI:5801 denotes Hydroxychloroquine
T513 438-443 CHEBI:23888;CHEBI:23888 denotes drugs
T514 459-469 UBERON:0002405 denotes autoimmune
T515 559-570 CHEBI:3638;DG_10;CHEBI:3638 denotes chloroquine
T516 575-593 CHEBI:5801;DG_20;CHEBI:5801 denotes hydroxychloroquine
T517 753-757 CHEBI:23888;CHEBI:23888 denotes drug
T518 758-762 CHEBI:23888;CHEBI:23888 denotes drug
T519 781-792 CHEBI:3638;CHEBI:3638;DG_10 denotes chloroquine
T520 854-862 SP_7 denotes COVID-19
T521 871-876 CHEBI:23888;CHEBI:23888 denotes drugs
T522 913-922 GO:0005768 denotes endosomal
T523 952-964 SP_7 denotes severe acute
T524 965-976 SP_7;UBERON:0001004;GO:0045333 denotes respiratory
T525 977-999 SP_7 denotes syndrome coronavirus 2
T526 1001-1011 SP_7 denotes SARS-CoV-2
T527 1021-1040 GO:0033644 denotes host cell membranes
T528 1055-1066 CHEBI:3638;DG_10;CHEBI:3638 denotes Chloroquine
T529 1106-1137 PG_10;PR:000003622 denotes angiotensin-converting enzyme 2
T530 1184-1192 SP_10 denotes SARS-CoV
T531 1230-1241 CHEBI:3638;DG_10;CHEBI:3638 denotes chloroquine
T532 1277-1287 SP_7 denotes SARS-CoV-2
T533 1293-1308 GO:0005769 denotes early endosomes
T534 1312-1325 GO:0036019 denotes endolysosomes
T535 1368-1373 NCBITaxon:10239 denotes viral
T536 1374-1380 SO:0001026 denotes genome
T537 1441-1452 CHEBI:3638;DG_10;CHEBI:3638 denotes chloroquine
T538 1461-1469 SP_10 denotes SARS-CoV
T539 1531-1539 SP_7 denotes Covid-19
T540 1668-1676 SP_7 denotes Covid-19
T541 1857-1867 CHEBI:23359;CHEBI:23359 denotes colchicine
T542 1962-1966 CHEBI:23888;CHEBI:23888 denotes drug
T543 2098-2108 SP_7 denotes SARS-CoV-2
T544 2276-2281 GO:0016265 denotes death
T545 2432-2437 GO:0016265 denotes death
T546 2653-2664 CHEBI:3638;DG_10;CHEBI:3638 denotes chloroquine
T547 2676-2684 SP_7 denotes COVID-19
T548 2736-2741 UBERON:0001977 denotes serum
T549 2745-2751 UBERON:0001969 denotes plasma
T550 2842-2848 UBERON:0001969 denotes plasma
T551 2852-2857 UBERON:0001977 denotes serum
T552 2925-2935 SP_7 denotes SARS-CoV-2
T4647 33-38 CHEBI:23888;CHEBI:23888 denotes drugs
T22923 42-50 SP_7 denotes COVID-19
T67458 141-149 SP_7 denotes COVID-19
T74320 306-311 UBERON:0007023 denotes adult
T60133 355-363 SP_7 denotes COVID-19
T9911 384-395 CHEBI:3638;DG_10;CHEBI:3638 denotes Chloroquine
T40787 400-418 CHEBI:5801;DG_20;CHEBI:5801 denotes Hydroxychloroquine
T85833 438-443 CHEBI:23888;CHEBI:23888 denotes drugs
T21838 459-469 UBERON:0002405 denotes autoimmune
T58854 559-570 CHEBI:3638;DG_10;CHEBI:3638 denotes chloroquine
T64677 575-593 CHEBI:5801;DG_20;CHEBI:5801 denotes hydroxychloroquine
T96563 753-757 CHEBI:23888;CHEBI:23888 denotes drug
T56096 758-762 CHEBI:23888;CHEBI:23888 denotes drug
T41047 781-792 CHEBI:3638;CHEBI:3638;DG_10 denotes chloroquine
T60504 854-862 SP_7 denotes COVID-19
T25815 871-876 CHEBI:23888;CHEBI:23888 denotes drugs
T1552 913-922 GO:0005768 denotes endosomal
T85941 952-964 SP_7 denotes severe acute
T93100 965-976 SP_7;UBERON:0001004;GO:0045333 denotes respiratory
T12989 977-999 SP_7 denotes syndrome coronavirus 2
T95194 1001-1011 SP_7 denotes SARS-CoV-2
T57374 1021-1040 GO:0033644 denotes host cell membranes
T53247 1055-1066 CHEBI:3638;DG_10;CHEBI:3638 denotes Chloroquine
T56451 1106-1137 PG_10;PR:000003622 denotes angiotensin-converting enzyme 2
T4651 1184-1192 SP_10 denotes SARS-CoV
T19999 1230-1241 CHEBI:3638;DG_10;CHEBI:3638 denotes chloroquine
T25569 1277-1287 SP_7 denotes SARS-CoV-2
T16398 1293-1308 GO:0005769 denotes early endosomes
T23904 1312-1325 GO:0036019 denotes endolysosomes
T1957 1368-1373 NCBITaxon:10239 denotes viral
T97228 1374-1380 SO:0001026 denotes genome
T4707 1441-1452 CHEBI:3638;DG_10;CHEBI:3638 denotes chloroquine
T70485 1461-1469 SP_10 denotes SARS-CoV
T65638 1531-1539 SP_7 denotes Covid-19
T27282 1668-1676 SP_7 denotes Covid-19
T51625 1857-1867 CHEBI:23359;CHEBI:23359 denotes colchicine
T57559 1962-1966 CHEBI:23888;CHEBI:23888 denotes drug
T27437 2098-2108 SP_7 denotes SARS-CoV-2
T89774 2276-2281 GO:0016265 denotes death
T18252 2432-2437 GO:0016265 denotes death
T65938 2653-2664 CHEBI:3638;DG_10;CHEBI:3638 denotes chloroquine
T13164 2676-2684 SP_7 denotes COVID-19
T32541 2736-2741 UBERON:0001977 denotes serum
T46521 2745-2751 UBERON:0001969 denotes plasma
T58589 2842-2848 UBERON:0001969 denotes plasma
T99545 2852-2857 UBERON:0001977 denotes serum
T13337 2925-2935 SP_7 denotes SARS-CoV-2

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1284 42-50 Disease denotes COVID-19 MESH:C000657245
1285 51-60 Disease denotes infection MESH:D007239
1290 312-320 Species denotes patients Tax:9606
1291 141-149 Disease denotes COVID-19 MESH:C000657245
1292 326-343 Disease denotes rheumatic disease MESH:D012216
1293 355-363 Disease denotes COVID-19 MESH:C000657245
1336 952-999 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049
1337 1001-1011 Species denotes SARS-CoV-2 Tax:2697049
1338 1184-1192 Species denotes SARS-CoV Tax:694009
1339 1277-1287 Species denotes SARS-CoV-2 Tax:2697049
1340 1461-1469 Species denotes SARS-CoV Tax:694009
1341 1517-1525 Species denotes patients Tax:9606
1342 2316-2324 Species denotes patients Tax:9606
1343 2790-2798 Species denotes patients Tax:9606
1344 2925-2935 Species denotes SARS-CoV-2 Tax:2697049
1345 384-395 Chemical denotes Chloroquine MESH:D002738
1346 400-418 Chemical denotes Hydroxychloroquine MESH:D006886
1347 559-570 Chemical denotes chloroquine MESH:D002738
1348 575-593 Chemical denotes hydroxychloroquine MESH:D006886
1349 595-598 Chemical denotes HCQ MESH:D006886
1350 643-646 Chemical denotes HCQ MESH:D006886
1351 781-792 Chemical denotes chloroquine MESH:D002738
1352 1055-1066 Chemical denotes Chloroquine MESH:D002738
1353 1230-1241 Chemical denotes chloroquine MESH:D002738
1354 1246-1249 Chemical denotes HCQ MESH:D006886
1355 1441-1452 Chemical denotes chloroquine MESH:D002738
1356 1488-1491 Chemical denotes HCQ MESH:D006886
1357 1850-1853 Chemical denotes HCQ MESH:D006886
1358 1857-1867 Chemical denotes colchicine MESH:D003078
1359 2250-2253 Chemical denotes HCQ MESH:D006886
1360 2326-2329 Chemical denotes HCQ MESH:D006886
1361 2653-2664 Chemical denotes chloroquine MESH:D002738
1362 2668-2671 Chemical denotes HCQ MESH:D006886
1363 2732-2735 Chemical denotes HCQ MESH:D006886
1364 459-478 Disease denotes autoimmune diseases MESH:D001327
1365 488-516 Disease denotes systemic lupus erythematosus MESH:D008180
1366 518-521 Disease denotes SLE MESH:D008180
1367 527-547 Disease denotes rheumatoid arthritis MESH:D001172
1368 549-551 Disease denotes RA MESH:D001172
1369 673-683 Disease denotes toxicities MESH:D064420
1370 854-862 Disease denotes COVID-19 MESH:C000657245
1371 1531-1539 Disease denotes Covid-19 MESH:C000657245
1372 1668-1676 Disease denotes Covid-19 MESH:C000657245
1373 2098-2118 Disease denotes SARS-CoV-2 infection MESH:C000657245
1374 2276-2281 Disease denotes death MESH:D003643
1375 2432-2437 Disease denotes death MESH:D003643
1376 2676-2684 Disease denotes COVID-19 MESH:C000657245
1377 2772-2789 Disease denotes rheumatic disease MESH:D012216

2_test

Id Subject Object Predicate Lexical cue
32535093-32020029-4828884 1471-1474 32020029 denotes 104
32535093-16115318-4828885 1475-1478 16115318 denotes 105
32535093-32194981-4828886 2120-2123 32194981 denotes 106