PMC:7288617
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T1 | 370-375 | Body_part | denotes | blood | http://purl.org/sig/ont/fma/fma9670 |
| T2 | 376-395 | Body_part | denotes | cerebrospinal fluid | http://purl.org/sig/ont/fma/fma20935 |
| T3 | 485-499 | Body_part | denotes | immunoglobulin | http://purl.org/sig/ont/fma/fma62871 |
| T4 | 698-709 | Body_part | denotes | lower limbs | http://purl.org/sig/ont/fma/fma7184 |
| T5 | 1309-1326 | Body_part | denotes | respiratory tract | http://purl.org/sig/ont/fma/fma265130 |
| T6 | 2215-2218 | Body_part | denotes | arm | http://purl.org/sig/ont/fma/fma24890 |
| T7 | 2364-2368 | Body_part | denotes | face | http://purl.org/sig/ont/fma/fma24728 |
| T8 | 2455-2460 | Body_part | denotes | brain | http://purl.org/sig/ont/fma/fma50801 |
| T9 | 2532-2537 | Body_part | denotes | blood | http://purl.org/sig/ont/fma/fma9670 |
| T10 | 2560-2563 | Body_part | denotes | HIV | http://purl.org/sig/ont/fma/fma278683 |
| T11 | 2669-2688 | Body_part | denotes | cerebrospinal fluid | http://purl.org/sig/ont/fma/fma20935 |
| T12 | 2690-2693 | Body_part | denotes | CSF | http://purl.org/sig/ont/fma/fma20935 |
| T13 | 2719-2722 | Body_part | denotes | CSF | http://purl.org/sig/ont/fma/fma20935 |
| T14 | 2748-2753 | Body_part | denotes | blood | http://purl.org/sig/ont/fma/fma9670 |
| T15 | 2754-2759 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T16 | 2765-2768 | Body_part | denotes | CSF | http://purl.org/sig/ont/fma/fma20935 |
| T17 | 2769-2774 | Body_part | denotes | serum | http://purl.org/sig/ont/fma/fma63083 |
| T18 | 2775-2782 | Body_part | denotes | glucose | http://purl.org/sig/ont/fma/fma82743 |
| T19 | 2807-2810 | Body_part | denotes | CSF | http://purl.org/sig/ont/fma/fma20935 |
| T20 | 2811-2818 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T21 | 2896-2899 | Body_part | denotes | CSF | http://purl.org/sig/ont/fma/fma20935 |
| T22 | 3441-3455 | Body_part | denotes | immunoglobulin | http://purl.org/sig/ont/fma/fma62871 |
| T23 | 3861-3875 | Body_part | denotes | immunoglobulin | http://purl.org/sig/ont/fma/fma62871 |
| T24 | 4053-4064 | Body_part | denotes | lower limbs | http://purl.org/sig/ont/fma/fma7184 |
| T25 | 4130-4133 | Body_part | denotes | CSF | http://purl.org/sig/ont/fma/fma20935 |
| T26 | 4468-4482 | Body_part | denotes | immunoglobulin | http://purl.org/sig/ont/fma/fma62871 |
| T27 | 5052-5068 | Body_part | denotes | trigeminal nerve | http://purl.org/sig/ont/fma/fma50866 |
| T28 | 5589-5603 | Body_part | denotes | immunoglobulin | http://purl.org/sig/ont/fma/fma62871 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T1 | 370-375 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
| T2 | 376-395 | Body_part | denotes | cerebrospinal fluid | http://purl.obolibrary.org/obo/UBERON_0001359 |
| T3 | 1309-1326 | Body_part | denotes | respiratory tract | http://purl.obolibrary.org/obo/UBERON_0000065 |
| T4 | 2215-2218 | Body_part | denotes | arm | http://purl.obolibrary.org/obo/UBERON_0001460 |
| T5 | 2364-2368 | Body_part | denotes | face | http://purl.obolibrary.org/obo/UBERON_0001456 |
| T6 | 2455-2460 | Body_part | denotes | brain | http://purl.obolibrary.org/obo/UBERON_0000955 |
| T7 | 2532-2537 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
| T8 | 2669-2688 | Body_part | denotes | cerebrospinal fluid | http://purl.obolibrary.org/obo/UBERON_0001359 |
| T9 | 2748-2753 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
| T10 | 2769-2774 | Body_part | denotes | serum | http://purl.obolibrary.org/obo/UBERON_0001977 |
| T11 | 5052-5068 | Body_part | denotes | trigeminal nerve | http://purl.obolibrary.org/obo/UBERON_0001645 |
| T12 | 5063-5068 | Body_part | denotes | nerve | http://purl.obolibrary.org/obo/UBERON_0001021 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T1 | 0-22 | Disease | denotes | Miller Fisher syndrome | http://purl.obolibrary.org/obo/MONDO_0005851 |
| T2 | 65-73 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T3 | 181-189 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T4 | 192-201 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
| T5 | 226-234 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T6 | 423-445 | Disease | denotes | Miller Fisher syndrome | http://purl.obolibrary.org/obo/MONDO_0005851 |
| T7 | 447-450 | Disease | denotes | MFS | http://purl.obolibrary.org/obo/MONDO_0007947|http://purl.obolibrary.org/obo/MONDO_0019202|http://purl.obolibrary.org/obo/MONDO_0005851 |
| T10 | 776-784 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T11 | 953-975 | Disease | denotes | Miller Fisher syndrome | http://purl.obolibrary.org/obo/MONDO_0005851 |
| T12 | 977-980 | Disease | denotes | MFS | http://purl.obolibrary.org/obo/MONDO_0007947|http://purl.obolibrary.org/obo/MONDO_0019202|http://purl.obolibrary.org/obo/MONDO_0005851 |
| T15 | 985-1019 | Disease | denotes | variant of Guillain-Barré syndrome | http://purl.obolibrary.org/obo/MONDO_0016493 |
| T16 | 996-1019 | Disease | denotes | Guillain-Barré syndrome | http://purl.obolibrary.org/obo/MONDO_0016218 |
| T17 | 1021-1024 | Disease | denotes | GBS | http://purl.obolibrary.org/obo/MONDO_0016218 |
| T18 | 1069-1084 | Disease | denotes | ophthalmoplegia | http://purl.obolibrary.org/obo/MONDO_0003425 |
| T19 | 1086-1092 | Disease | denotes | ataxia | http://purl.obolibrary.org/obo/MONDO_0000437 |
| T20 | 1170-1179 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T21 | 1309-1337 | Disease | denotes | respiratory tract infections | http://purl.obolibrary.org/obo/MONDO_0024355 |
| T22 | 1349-1358 | Disease | denotes | influenza | http://purl.obolibrary.org/obo/MONDO_0005812 |
| T23 | 1552-1561 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
| T24 | 1586-1594 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T25 | 1597-1606 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T26 | 1736-1744 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T27 | 2136-2142 | Disease | denotes | ataxia | http://purl.obolibrary.org/obo/MONDO_0000437 |
| T28 | 2144-2159 | Disease | denotes | ophthalmoplegia | http://purl.obolibrary.org/obo/MONDO_0003425 |
| T29 | 2219-2239 | Disease | denotes | cerebellar dysmetria | http://purl.obolibrary.org/obo/MONDO_0000437 |
| T30 | 2405-2411 | Disease | denotes | stroke | http://purl.obolibrary.org/obo/MONDO_0005098|http://purl.obolibrary.org/obo/MONDO_0011057 |
| T32 | 2625-2645 | Disease | denotes | autoimmune disorders | http://purl.obolibrary.org/obo/MONDO_0007179 |
| T33 | 3000-3012 | Disease | denotes | tuberculosis | http://purl.obolibrary.org/obo/MONDO_0018076 |
| T34 | 3074-3080 | Disease | denotes | Dengue | http://purl.obolibrary.org/obo/MONDO_0005502 |
| T35 | 3228-3236 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T36 | 3412-3415 | Disease | denotes | CFS | http://purl.obolibrary.org/obo/MONDO_0005404 |
| T37 | 3686-3692 | Disease | denotes | ataxia | http://purl.obolibrary.org/obo/MONDO_0000437 |
| T38 | 3745-3753 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T39 | 4225-4228 | Disease | denotes | MFS | http://purl.obolibrary.org/obo/MONDO_0007947|http://purl.obolibrary.org/obo/MONDO_0019202|http://purl.obolibrary.org/obo/MONDO_0005851 |
| T42 | 4355-4358 | Disease | denotes | MFS | http://purl.obolibrary.org/obo/MONDO_0007947|http://purl.obolibrary.org/obo/MONDO_0019202|http://purl.obolibrary.org/obo/MONDO_0005851 |
| T45 | 4364-4372 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T46 | 4538-4560 | Disease | denotes | respiratory infections | http://purl.obolibrary.org/obo/MONDO_0024355 |
| T47 | 4631-4639 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T48 | 4696-4704 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T49 | 5086-5089 | Disease | denotes | MFS | http://purl.obolibrary.org/obo/MONDO_0007947|http://purl.obolibrary.org/obo/MONDO_0019202|http://purl.obolibrary.org/obo/MONDO_0005851 |
| T52 | 5094-5097 | Disease | denotes | MFS | http://purl.obolibrary.org/obo/MONDO_0007947|http://purl.obolibrary.org/obo/MONDO_0019202|http://purl.obolibrary.org/obo/MONDO_0005851 |
| T55 | 5267-5270 | Disease | denotes | MFS | http://purl.obolibrary.org/obo/MONDO_0007947|http://purl.obolibrary.org/obo/MONDO_0019202|http://purl.obolibrary.org/obo/MONDO_0005851 |
| T58 | 5292-5300 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T59 | 5494-5497 | Disease | denotes | MFS | http://purl.obolibrary.org/obo/MONDO_0007947|http://purl.obolibrary.org/obo/MONDO_0019202|http://purl.obolibrary.org/obo/MONDO_0005851 |
| T62 | 5506-5518 | Disease | denotes | polyneuritis | http://purl.obolibrary.org/obo/MONDO_0021718 |
| T63 | 5537-5545 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 50-51 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T2 | 146-147 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T3 | 359-360 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T4 | 370-375 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | blood |
| T5 | 370-375 | http://www.ebi.ac.uk/efo/EFO_0000296 | denotes | blood |
| T6 | 408-409 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T7 | 591-594 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T8 | 704-709 | http://www.ebi.ac.uk/efo/EFO_0000876 | denotes | limbs |
| T9 | 787-790 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T10 | 944-951 | http://purl.obolibrary.org/obo/OBI_0000968 | denotes | devices |
| T11 | 983-984 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T12 | 1243-1247 | http://purl.obolibrary.org/obo/CLO_0001185 | denotes | 2018 |
| T13 | 1382-1383 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T14 | 1415-1421 | http://purl.obolibrary.org/obo/UBERON_0003100 | denotes | female |
| T15 | 1437-1438 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T16 | 1527-1528 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T17 | 1565-1566 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T18 | 1681-1682 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T19 | 1909-1911 | http://purl.obolibrary.org/obo/CLO_0001000 | denotes | 35 |
| T20 | 1915-1918 | http://purl.obolibrary.org/obo/CLO_0050884 | denotes | Ten |
| T21 | 2215-2218 | http://www.ebi.ac.uk/efo/EFO_0001410 | denotes | arm |
| T22 | 2364-2368 | http://purl.obolibrary.org/obo/UBERON_0001456 | denotes | face |
| T23 | 2381-2382 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T24 | 2383-2392 | http://purl.obolibrary.org/obo/UBERON_0001353 | denotes | posterior |
| T25 | 2413-2414 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T26 | 2455-2460 | http://purl.obolibrary.org/obo/UBERON_0000955 | denotes | brain |
| T27 | 2455-2460 | http://www.ebi.ac.uk/efo/EFO_0000302 | denotes | brain |
| T28 | 2532-2537 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | blood |
| T29 | 2532-2537 | http://www.ebi.ac.uk/efo/EFO_0000296 | denotes | blood |
| T30 | 2548-2553 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tests |
| T31 | 2593-2594 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T32 | 2616-2621 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tests |
| T33 | 2748-2759 | http://www.ebi.ac.uk/efo/EFO_0000296 | denotes | blood cells |
| T34 | 2886-2888 | http://purl.obolibrary.org/obo/CLO_0053799 | denotes | 45 |
| T35 | 2957-2966 | http://purl.obolibrary.org/obo/OBI_0100026 | denotes | organisms |
| T36 | 2957-2966 | http://purl.obolibrary.org/obo/UBERON_0000468 | denotes | organisms |
| T37 | 2976-2984 | http://purl.obolibrary.org/obo/NCBITaxon_2 | denotes | bacteria |
| T38 | 3028-3035 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | viruses |
| T39 | 3061-3062 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | B |
| T40 | 3063-3068 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T41 | 3081-3088 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | viruses |
| T42 | 3253-3254 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T43 | 3296-3299 | http://purl.obolibrary.org/obo/CLO_0003535 | denotes | GM2 |
| T44 | 3946-3949 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T45 | 4059-4064 | http://www.ebi.ac.uk/efo/EFO_0000876 | denotes | limbs |
| T46 | 4151-4152 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T47 | 4362-4363 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T48 | 4595-4596 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T49 | 4897-4902 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tests |
| T50 | 5063-5068 | http://purl.obolibrary.org/obo/UBERON_0001021 | denotes | nerve |
| T51 | 5492-5493 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T52 | 5522-5523 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T1 | 1782-1791 | Chemical | denotes | antiviral | http://purl.obolibrary.org/obo/CHEBI_22587 |
| T2 | 1801-1810 | Chemical | denotes | lopinavir | http://purl.obolibrary.org/obo/CHEBI_31781 |
| T3 | 1813-1822 | Chemical | denotes | ritonavir | http://purl.obolibrary.org/obo/CHEBI_45409 |
| T4 | 1837-1855 | Chemical | denotes | hydroxychloroquine | http://purl.obolibrary.org/obo/CHEBI_5801 |
| T5 | 1869-1879 | Chemical | denotes | antibiotic | http://purl.obolibrary.org/obo/CHEBI_33281 |
| T6 | 1893-1899 | Chemical | denotes | oxygen | http://purl.obolibrary.org/obo/CHEBI_25805 |
| T7 | 2775-2782 | Chemical | denotes | glucose | http://purl.obolibrary.org/obo/CHEBI_17234|http://purl.obolibrary.org/obo/CHEBI_4167 |
| T9 | 2811-2818 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T10 | 3286-3289 | Chemical | denotes | GM1 | http://purl.obolibrary.org/obo/CHEBI_18216|http://purl.obolibrary.org/obo/CHEBI_61048|http://purl.obolibrary.org/obo/CHEBI_73110 |
| T13 | 3296-3299 | Chemical | denotes | GM2 | http://purl.obolibrary.org/obo/CHEBI_141420|http://purl.obolibrary.org/obo/CHEBI_51013|http://purl.obolibrary.org/obo/CHEBI_60327|http://purl.obolibrary.org/obo/CHEBI_89635 |
| T17 | 3306-3309 | Chemical | denotes | GM3 | http://purl.obolibrary.org/obo/CHEBI_15681|http://purl.obolibrary.org/obo/CHEBI_84118 |
| T19 | 3316-3320 | Chemical | denotes | GD1a | http://purl.obolibrary.org/obo/CHEBI_18163|http://purl.obolibrary.org/obo/CHEBI_82607 |
| T21 | 3327-3331 | Chemical | denotes | GD1b | http://purl.obolibrary.org/obo/CHEBI_28175 |
| T22 | 3338-3342 | Chemical | denotes | GT1b | http://purl.obolibrary.org/obo/CHEBI_28058 |
| T23 | 3353-3357 | Chemical | denotes | GQ1b | http://purl.obolibrary.org/obo/CHEBI_27515 |
| T24 | 4780-4784 | Chemical | denotes | GQ1b | http://purl.obolibrary.org/obo/CHEBI_27515 |
| T25 | 4892-4896 | Chemical | denotes | GQ1b | http://purl.obolibrary.org/obo/CHEBI_27515 |
| T26 | 5108-5112 | Chemical | denotes | Polo | http://purl.obolibrary.org/obo/CHEBI_39299 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 1709-1714 | http://purl.obolibrary.org/obo/GO_0050909 | denotes | taste |
| T2 | 5219-5233 | http://purl.obolibrary.org/obo/GO_0050909 | denotes | sense of taste |
LitCovid-PD-GlycoEpitope
| Id | Subject | Object | Predicate | Lexical cue | glyco_epitope_db_id |
|---|---|---|---|---|---|
| T1 | 3281-3289 | GlycoEpitope | denotes | anti-GM1 | http://www.glycoepitope.jp/epitopes/AN0713 |
| T2 | 3286-3289 | GlycoEpitope | denotes | GM1 | http://www.glycoepitope.jp/epitopes/EP0050 |
| T3 | 3316-3320 | GlycoEpitope | denotes | GD1a | http://www.glycoepitope.jp/epitopes/EP0056 |
| T4 | 3322-3331 | GlycoEpitope | denotes | anti-GD1b | http://www.glycoepitope.jp/epitopes/AN0403 |
| T5 | 3327-3331 | GlycoEpitope | denotes | GD1b | http://www.glycoepitope.jp/epitopes/EP0059 |
| T6 | 3338-3342 | GlycoEpitope | denotes | GT1b | http://www.glycoepitope.jp/epitopes/EP0067 |
| T7 | 3353-3357 | GlycoEpitope | denotes | GQ1b | http://www.glycoepitope.jp/epitopes/EP0069 |
| T8 | 4780-4784 | GlycoEpitope | denotes | GQ1b | http://www.glycoepitope.jp/epitopes/EP0069 |
| T9 | 4892-4896 | GlycoEpitope | denotes | GQ1b | http://www.glycoepitope.jp/epitopes/EP0069 |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T1 | 192-201 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
| T2 | 678-709 | Phenotype | denotes | hyporeflexia at the lower limbs | http://purl.obolibrary.org/obo/HP_0002600 |
| T3 | 1069-1084 | Phenotype | denotes | ophthalmoplegia | http://purl.obolibrary.org/obo/HP_0000602 |
| T4 | 1086-1092 | Phenotype | denotes | ataxia | http://purl.obolibrary.org/obo/HP_0001251 |
| T5 | 1098-1107 | Phenotype | denotes | areflexia | http://purl.obolibrary.org/obo/HP_0001284 |
| T6 | 1309-1337 | Phenotype | denotes | respiratory tract infections | http://purl.obolibrary.org/obo/HP_0011947 |
| T7 | 1552-1561 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
| T8 | 1660-1665 | Phenotype | denotes | fever | http://purl.obolibrary.org/obo/HP_0001945 |
| T9 | 1670-1675 | Phenotype | denotes | cough | http://purl.obolibrary.org/obo/HP_0012735 |
| T10 | 2036-2044 | Phenotype | denotes | diplopia | http://purl.obolibrary.org/obo/HP_0000651 |
| T11 | 2056-2067 | Phenotype | denotes | paresthesia | http://purl.obolibrary.org/obo/HP_0003401 |
| T12 | 2136-2142 | Phenotype | denotes | ataxia | http://purl.obolibrary.org/obo/HP_0001251 |
| T13 | 2144-2159 | Phenotype | denotes | ophthalmoplegia | http://purl.obolibrary.org/obo/HP_0000602 |
| T14 | 2165-2173 | Phenotype | denotes | diplopia | http://purl.obolibrary.org/obo/HP_0000651 |
| T15 | 2230-2239 | Phenotype | denotes | dysmetria | http://purl.obolibrary.org/obo/HP_0001310 |
| T16 | 2253-2262 | Phenotype | denotes | areflexia | http://purl.obolibrary.org/obo/HP_0001284 |
| T17 | 2300-2312 | Phenotype | denotes | hypoesthesia | http://purl.obolibrary.org/obo/HP_0003474 |
| T18 | 2405-2411 | Phenotype | denotes | stroke | http://purl.obolibrary.org/obo/HP_0001297 |
| T19 | 2625-2645 | Phenotype | denotes | autoimmune disorders | http://purl.obolibrary.org/obo/HP_0002960 |
| T20 | 3612-3620 | Phenotype | denotes | diplopia | http://purl.obolibrary.org/obo/HP_0000651 |
| T21 | 3625-3634 | Phenotype | denotes | dysmetria | http://purl.obolibrary.org/obo/HP_0001310 |
| T22 | 3686-3692 | Phenotype | denotes | ataxia | http://purl.obolibrary.org/obo/HP_0001251 |
| T23 | 4033-4064 | Phenotype | denotes | hyporeflexia at the lower limbs | http://purl.obolibrary.org/obo/HP_0002600 |
| T24 | 4538-4560 | Phenotype | denotes | respiratory infections | http://purl.obolibrary.org/obo/HP_0011947 |
| T25 | 5506-5518 | Phenotype | denotes | polyneuritis | http://purl.obolibrary.org/obo/HP_0031003 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 0-75 | Sentence | denotes | Miller Fisher syndrome diagnosis and treatment in a patient with SARS-CoV-2 |
| T2 | 78-86 | Sentence | denotes | Abstract |
| T3 | 87-316 | Sentence | denotes | This case report describes the clinical characteristics of a 50-year-old woman that developed SARS-CoV-2 pneumonia and was admitted at the COVID-19 dedicated unit where she developed neurological symptoms 10 days after admission. |
| T4 | 317-529 | Sentence | denotes | After neurological examination, including a panel of blood cerebrospinal fluid biomarkers, a diagnosis of Miller Fisher syndrome (MFS) was hypothesized and intravenous immunoglobulin therapy (IVIG) was initiated. |
| T5 | 530-735 | Sentence | denotes | Fourteen days after the start of IVIG treatment, the patient has been discharged at home with the resolution of respiratory symptoms and only minor hyporeflexia at the lower limbs, without any side effect. |
| T6 | 737-952 | Sentence | denotes | The diffusion of the novel coronavirus SARS-CoV-2 has rapidly spread worldwide, with several cases requiring intensive care and hospitalization because of the severe respiratory symptoms requiring assisting devices. |
| T7 | 953-1108 | Sentence | denotes | Miller Fisher syndrome (MFS), a variant of Guillain-Barré syndrome (GBS), is characterized by the clinical triad of ophthalmoplegia, ataxia, and areflexia. |
| T8 | 1109-1242 | Sentence | denotes | About 60% of the above mentioned autoimmune syndromes can be infection-related by humoral and cellular cross-reactivity (Pusch et al. |
| T9 | 1243-1374 | Sentence | denotes | 2018), most frequently gastrointestinal (Campylobacter jejuni) or respiratory tract infections, including influenza (Sellers et al. |
| T10 | 1375-1381 | Sentence | denotes | 2017). |
| T11 | 1382-1607 | Sentence | denotes | A previously healthy 50-year-old female, who worked as a healthcare assistant in an assisted living community, was admitted to the hospital with a diagnosis of bilateral pneumonia as a consequence of the SARS-CoV-2 infection. |
| T12 | 1608-1728 | Sentence | denotes | The first symptoms 6 days before the admission were fever and cough, and a significant alteration of taste was reported. |
| T13 | 1729-1914 | Sentence | denotes | In the COVID-19 protected area, she was treated with antiviral therapy (lopinavir + ritonavir) for 14 days, hydroxychloroquine for 10 days, antibiotic therapy, and oxygen support (35%). |
| T14 | 1915-2068 | Sentence | denotes | Ten days after hospital admission, the pulmonary function improved, but the patient developed neurological signs such as diplopia and facial paresthesia. |
| T15 | 2069-2369 | Sentence | denotes | The first neurological examination found walking impairment due to ataxia, ophthalmoplegia with diplopia in vertical and lateral gaze, left upper arm cerebellar dysmetria, generalized areflexia, mild lower facial defects, and mild hypoesthesia in the left mandibular and maxillary branch of the face. |
| T16 | 2370-2508 | Sentence | denotes | To exclude a posterior circulation stroke, a magnetic resonance imaging (MRI) of the brain was performed, which revealed no abnormalities. |
| T17 | 2509-2664 | Sentence | denotes | The results of routine blood chemistry tests, anti-HIV, anti-HBV, and anti-HCV, and a panel of serological tests of autoimmune disorders were unremarkable. |
| T18 | 2665-2760 | Sentence | denotes | The cerebrospinal fluid (CSF) analysis revealed clear CSF, normal pressure, and no blood cells. |
| T19 | 2761-2806 | Sentence | denotes | The CSF/serum glucose ratio was 80/110 mg/dL. |
| T20 | 2807-2895 | Sentence | denotes | CSF protein concentration was 74.9 mg/dL, higher compared with normal values < 45 mg/dL. |
| T21 | 2896-3115 | Sentence | denotes | CSF culture and polymerase chain reaction (PCR) for possible organisms, such as bacteria, Mycobacterium tuberculosis, fungi, Herpes viruses, Enteroviruses, Japanese B virus, and Dengue viruses, yielded negative results. |
| T22 | 3116-3252 | Sentence | denotes | Neurophysiological evaluation, as electroneuromyography, was not possible because of the limitations due to the COVID-19 protected area. |
| T23 | 3253-3372 | Sentence | denotes | A panel of AGAbs, including anti-GM1, anti-GM2, anti-GM3, anti-GD1a, anti-GD1b, anti-GT1b, and anti-GQ1b, was negative. |
| T24 | 3373-3508 | Sentence | denotes | Based on the clinical presentation and CFS findings, an intravenous immunoglobulin (IVIG) therapy was initiated at 0.4 g/kg for 5 days. |
| T25 | 3509-3693 | Sentence | denotes | The neurological symptoms resolved 7 days after the start of IVIG treatment, with complete recovery of diplopia and dysmetria, and the patient was able to walk without signs of ataxia. |
| T26 | 3694-3803 | Sentence | denotes | After the acute phase, the patient remained in the COVID-19 protected area still needing respiratory support. |
| T27 | 3804-3884 | Sentence | denotes | No side effects were reported for the use of intravenous immunoglobulin therapy. |
| T28 | 3885-4065 | Sentence | denotes | Fourteen days after the start of IVIG treatment, the patient has been discharged at home with the resolution of respiratory symptoms and only minor hyporeflexia at the lower limbs. |
| T29 | 4067-4077 | Sentence | denotes | Discussion |
| T30 | 4078-4287 | Sentence | denotes | The clinical presentation of the reported case, and CSF analysis showing a picture of albumin-cytological dissociation, suggested the diagnosis of MFS as previously described in the literature (Wakerley et al. |
| T31 | 4288-4294 | Sentence | denotes | 2014). |
| T32 | 4295-4491 | Sentence | denotes | The novelty of this case is represented by the diagnosis of MFS in a COVID-19 patient and by the clinical suggestion of treating neurological complications with intravenous immunoglobulin therapy. |
| T33 | 4492-4576 | Sentence | denotes | Such neurological complications are common in respiratory infections (Sellers et al. |
| T34 | 4577-4682 | Sentence | denotes | 2017); therefore, a cross-reactivity also for the new SARS-CoV-2 was speculated and reported (Zhao et al. |
| T35 | 4683-4735 | Sentence | denotes | 2020) as for SARS-CoV affected patients (Baig et al. |
| T36 | 4736-4742 | Sentence | denotes | 2020). |
| T37 | 4743-4849 | Sentence | denotes | We did not find any presence of anti-GQ1b, usually explaining the symptoms of the disease (Wakerley et al. |
| T38 | 4850-4856 | Sentence | denotes | 2014). |
| T39 | 4857-4968 | Sentence | denotes | However, negative results for anti-GQ1b tests have been previously reported (Wattanasit and Sathirapanya 2020). |
| T40 | 4969-5119 | Sentence | denotes | The particular cranial polyradiculoneuritis with the involvement of the facial and trigeminal nerve is well-known in MFS and MFS variants (Polo et al. |
| T41 | 5120-5141 | Sentence | denotes | 1992; Wakerley et al. |
| T42 | 5142-5301 | Sentence | denotes | 2014), and in the reported case, it was found being associated to an altered sense of taste, which is an uncommon feature of MFS but well-reported in COVID-19. |
| T43 | 5302-5426 | Sentence | denotes | IVIG was found to be effective and safe to treat the reported neurological symptoms, showing complete recovery after 7 days. |
| T44 | 5427-5692 | Sentence | denotes | In conclusion, this case report describes the characteristics of a MFS/cranial polyneuritis in a patient with COVID-19, and the clinical responses to intravenous immunoglobulin therapy, suggesting possible diagnosis and treatment options in this peculiar condition. |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 1 | 52-59 | Species | denotes | patient | Tax:9606 |
| 9 | 160-165 | Species | denotes | woman | Tax:9606 |
| 10 | 583-590 | Species | denotes | patient | Tax:9606 |
| 11 | 181-201 | Disease | denotes | SARS-CoV-2 pneumonia | MESH:C000657245 |
| 12 | 226-234 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 13 | 447-450 | Disease | denotes | MFS | MESH:D008382 |
| 14 | 642-662 | Disease | denotes | respiratory symptoms | MESH:D012818 |
| 15 | 678-690 | Disease | denotes | hyporeflexia | MESH:D012021 |
| 28 | 758-775 | Species | denotes | novel coronavirus | Tax:2697049 |
| 29 | 776-786 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 30 | 1284-1304 | Species | denotes | Campylobacter jejuni | Tax:197 |
| 31 | 903-923 | Disease | denotes | respiratory symptoms | MESH:D012818 |
| 32 | 977-980 | Disease | denotes | MFS | MESH:D008382 |
| 33 | 1021-1024 | Disease | denotes | GBS | MESH:D020275 |
| 34 | 1069-1084 | Disease | denotes | ophthalmoplegia | MESH:D009886 |
| 35 | 1086-1092 | Disease | denotes | ataxia | MESH:D001259 |
| 36 | 1098-1107 | Disease | denotes | areflexia | MESH:D000071699 |
| 37 | 1142-1162 | Disease | denotes | autoimmune syndromes | MESH:D001327 |
| 38 | 1170-1179 | Disease | denotes | infection | MESH:D007239 |
| 39 | 1309-1337 | Disease | denotes | respiratory tract infections | MESH:D012141 |
| 56 | 1991-1998 | Species | denotes | patient | Tax:9606 |
| 57 | 1801-1822 | Chemical | denotes | lopinavir + ritonavir | MESH:C558899 |
| 58 | 1837-1855 | Chemical | denotes | hydroxychloroquine | MESH:D006886 |
| 59 | 1893-1899 | Chemical | denotes | oxygen | MESH:D010100 |
| 60 | 1542-1561 | Disease | denotes | bilateral pneumonia | MESH:D011014 |
| 61 | 1586-1606 | Disease | denotes | SARS-CoV-2 infection | MESH:C000657245 |
| 62 | 1660-1665 | Disease | denotes | fever | MESH:D005334 |
| 63 | 1670-1675 | Disease | denotes | cough | MESH:D003371 |
| 64 | 1736-1744 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 65 | 2036-2044 | Disease | denotes | diplopia | MESH:D004172 |
| 66 | 2136-2159 | Disease | denotes | ataxia, ophthalmoplegia | MESH:D001259 |
| 67 | 2165-2173 | Disease | denotes | diplopia | MESH:D004172 |
| 68 | 2219-2239 | Disease | denotes | cerebellar dysmetria | MESH:D002524 |
| 69 | 2253-2262 | Disease | denotes | areflexia | MESH:D000071699 |
| 70 | 2275-2289 | Disease | denotes | facial defects | MESH:D000014 |
| 71 | 2300-2312 | Disease | denotes | hypoesthesia | MESH:D006987 |
| 77 | 2986-3012 | Species | denotes | Mycobacterium tuberculosis | Tax:1773 |
| 78 | 3074-3088 | Species | denotes | Dengue viruses | Tax:11052 |
| 79 | 2775-2782 | Chemical | denotes | glucose | MESH:D005947 |
| 80 | 2405-2411 | Disease | denotes | stroke | MESH:D020521 |
| 81 | 2625-2645 | Disease | denotes | autoimmune disorders | MESH:D001327 |
| 86 | 3286-3289 | Chemical | denotes | GM1 | MESH:D005677 |
| 87 | 3296-3299 | Chemical | denotes | GM2 | |
| 88 | 3306-3309 | Chemical | denotes | GM3 | |
| 89 | 3228-3236 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 99 | 3644-3651 | Species | denotes | patient | Tax:9606 |
| 100 | 3721-3728 | Species | denotes | patient | Tax:9606 |
| 101 | 3938-3945 | Species | denotes | patient | Tax:9606 |
| 102 | 3612-3620 | Disease | denotes | diplopia | MESH:D004172 |
| 103 | 3625-3634 | Disease | denotes | dysmetria | MESH:D002524 |
| 104 | 3686-3692 | Disease | denotes | ataxia | MESH:D001259 |
| 105 | 3745-3753 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 106 | 3997-4017 | Disease | denotes | respiratory symptoms | MESH:D012818 |
| 107 | 4033-4045 | Disease | denotes | hyporeflexia | MESH:D012021 |
| 127 | 4373-4380 | Species | denotes | patient | Tax:9606 |
| 128 | 4631-4641 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 129 | 4696-4704 | Species | denotes | SARS-CoV | Tax:694009 |
| 130 | 4714-4722 | Species | denotes | patients | Tax:9606 |
| 131 | 5524-5531 | Species | denotes | patient | Tax:9606 |
| 132 | 4225-4228 | Disease | denotes | MFS | MESH:D008382 |
| 133 | 4355-4358 | Disease | denotes | MFS | MESH:D008382 |
| 134 | 4364-4372 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 135 | 4424-4450 | Disease | denotes | neurological complications | MESH:D002493 |
| 136 | 4497-4523 | Disease | denotes | neurological complications | MESH:D002493 |
| 137 | 4538-4560 | Disease | denotes | respiratory infections | MESH:D012141 |
| 138 | 4984-5012 | Disease | denotes | cranial polyradiculoneuritis | MESH:D011129 |
| 139 | 5086-5089 | Disease | denotes | MFS | MESH:D008382 |
| 140 | 5094-5097 | Disease | denotes | MFS | MESH:D008382 |
| 141 | 5267-5270 | Disease | denotes | MFS | MESH:D008382 |
| 142 | 5292-5300 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 143 | 5494-5497 | Disease | denotes | MFS | MESH:D008382 |
| 144 | 5498-5518 | Disease | denotes | cranial polyneuritis | MESH:D009443 |
| 145 | 5537-5545 | Disease | denotes | COVID-19 | MESH:C000657245 |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32529516-25072194-63346690 | 4288-4292 | 25072194 | denotes | 2014 |
| 32529516-28745014-63346691 | 4577-4581 | 28745014 | denotes | 2017 |
| 32529516-32246917-63346692 | 4683-4687 | 32246917 | denotes | 2020 |
| 32529516-32167747-63346693 | 4736-4740 | 32167747 | denotes | 2020 |
| 32529516-25072194-63346694 | 4850-4854 | 25072194 | denotes | 2014 |
| 32529516-32231550-63346695 | 4962-4966 | 32231550 | denotes | 2020 |
| 32529516-1318358-63346696 | 5120-5124 | 1318358 | denotes | 1992 |
| 32529516-25072194-63346697 | 5142-5146 | 25072194 | denotes | 2014 |