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PMC:7283670 / 35135-36884 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T67091 148-153 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T45012 158-164 Body_part denotes Throat http://purl.org/sig/ont/fma/fma228738
T67712 417-421 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T88534 749-766 Body_part denotes right lower lobes http://purl.org/sig/ont/fma/fma7337
T76233 1064-1069 Body_part denotes Blood http://purl.org/sig/ont/fma/fma9670

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T62 148-153 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T63 158-164 Body_part denotes Throat http://purl.obolibrary.org/obo/UBERON_0000341
T64 417-421 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T65 1064-1069 Body_part denotes Blood http://purl.obolibrary.org/obo/UBERON_0000178

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T200 191-199 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T201 200-209 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T202 1176-1184 Disease denotes diarrhea http://purl.obolibrary.org/obo/MONDO_0001673
T203 1267-1284 Disease denotes pulmonary disease http://purl.obolibrary.org/obo/MONDO_0005275
T204 1286-1298 Disease denotes tuberculosis http://purl.obolibrary.org/obo/MONDO_0018076
T205 1312-1324 Disease denotes hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T206 1483-1491 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T207 1492-1501 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T329 74-76 http://purl.obolibrary.org/obo/CLO_0001407 denotes 52
T330 91-93 http://purl.obolibrary.org/obo/CLO_0001382 denotes 48
T331 148-153 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T332 366-368 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T333 417-421 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T334 417-421 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T335 768-771 http://purl.obolibrary.org/obo/CLO_0001196 denotes 225
T336 773-775 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T337 901-903 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T338 905-907 http://purl.obolibrary.org/obo/CLO_0001407 denotes 52
T339 1064-1069 http://purl.obolibrary.org/obo/UBERON_0000178 denotes Blood
T340 1064-1069 http://www.ebi.ac.uk/efo/EFO_0000296 denotes Blood
T341 1126-1128 http://purl.obolibrary.org/obo/CLO_0001382 denotes 48
T342 1168-1172 http://purl.obolibrary.org/obo/CLO_0050507 denotes 2 [2
T343 1186-1190 http://purl.obolibrary.org/obo/CLO_0001302 denotes 3 [4
T344 1204-1208 http://purl.obolibrary.org/obo/CLO_0053799 denotes 4 [5
T345 1398-1402 http://purl.obolibrary.org/obo/CLO_0001203 denotes 23–2

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T75 438-440 Chemical denotes SD http://purl.obolibrary.org/obo/CHEBI_74807
T76 447-452 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T77 515-520 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T78 564-569 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T79 596-601 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T80 1093-1096 Chemical denotes AST http://purl.obolibrary.org/obo/CHEBI_76649

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T298 0-260 Sentence denotes Shi et al. (2020), China Retrospective/hospitals in Wuhan 81, 49–5, 42 (52%) men and 39 (48%) women Next‐generation sequencing or RT‐PCR, serial chest CT Throat swab specimens Confirmed COVID‐19 pneumonia patients/direct exposure to Huanan seafood market:
T299 261-291 Sentence denotes 31 (38%), health‐care workers:
T300 292-320 Sentence denotes 15 (19%), familial clusters:
T301 321-361 Sentence denotes 7 (9%), any obvious history of exposure:
T302 362-431 Sentence denotes 28 (35%) Spectrum of disease: mean number of involved lung segments:
T303 432-503 Sentence denotes 10.5 (SD 6.4): group 1: subclinical patients (CT before symptom onset):
T304 504-627 Sentence denotes 2.8 (3.3), group 2: ≤1 week after symptom onset/11.1 (5.4), group 3: >1–2 weeks/13.0 (5.7), group 4: >2–3 weeks/12.1 (5.9).
T305 628-631 Sentence denotes CT:
T306 632-636 Sentence denotes ALL:
T307 637-659 Sentence denotes bilateral abnormality:
T308 660-717 Sentence denotes 64 [79%], peripheral 44 [54%], Ill‐defined 66 [81%], GGO:
T309 718-767 Sentence denotes 53 [65%], mainly involving the right lower lobes:
T310 768-785 Sentence denotes 225 [27%] of 849.
T311 786-813 Sentence denotes Group 1 (n=15): unilateral:
T312 814-845 Sentence denotes 9 [60%]/multifocal 8 [53%]/GGO:
T313 846-998 Sentence denotes 14 [93%]; Group 2 (n = 21): bilateral 19 [90%]/diffuse 11 [52%]/GGO predominance 17 [81%]; Group 3 (n = 30): GGO 17 [57%], consolidation/mixed patterns:
T314 999-1054 Sentence denotes 12 [40%]; Group 4 (n=15): consolidation/mixed patterns:
T315 1055-1063 Sentence denotes 8 [53%].
T316 1064-1070 Sentence denotes Blood:
T317 1071-1078 Sentence denotes Group1:
T318 1079-1104 Sentence denotes Lower CRP and AST Fever:
T319 1105-1125 Sentence denotes 59 [73%], dry cough:
T320 1126-1156 Sentence denotes 48 [59%] nonspecific symptoms:
T321 1157-1167 Sentence denotes dizziness:
T322 1168-1185 Sentence denotes 2 [2%], diarrhea:
T323 1186-1203 Sentence denotes 3 [4%], vomiting:
T324 1204-1221 Sentence denotes 4 [5%], headache:
T325 1222-1251 Sentence denotes 5 [6%], generalised weakness:
T326 1252-1300 Sentence denotes 7 [9%]/chronic pulmonary disease (tuberculosis):
T327 1301-1308 Sentence denotes 1, T2D:
T328 1309-1363 Sentence denotes 1, hypertension/cardiovascular/erebrovascular disease:
T329 1364-1466 Sentence denotes 1 Symptom onset and discharge of 23–2 days 3 (4%) By February 8, 2020, 62 (77%) patients discharged
T330 1467-1675 Sentence denotes Interpretation: COVID‐19 pneumonia include CT abnormalities that rapidly progress from focal unilateral to diffuse bilateral GGO coexisted with consolidations within 1–3 weeks (even in asymptomatic patients).
T331 1676-1749 Sentence denotes Early diagnosis through combined CT with clinical and laboratory findings

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T97 200-209 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T98 1098-1103 Phenotype denotes Fever http://purl.obolibrary.org/obo/HP_0001945
T99 1115-1124 Phenotype denotes dry cough http://purl.obolibrary.org/obo/HP_0031246
T100 1157-1166 Phenotype denotes dizziness http://purl.obolibrary.org/obo/HP_0002321
T101 1176-1184 Phenotype denotes diarrhea http://purl.obolibrary.org/obo/HP_0002014
T102 1194-1202 Phenotype denotes vomiting http://purl.obolibrary.org/obo/HP_0002013
T103 1212-1220 Phenotype denotes headache http://purl.obolibrary.org/obo/HP_0002315
T104 1312-1324 Phenotype denotes hypertension http://purl.obolibrary.org/obo/HP_0000822
T105 1492-1501 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1080 1085-1088 Gene denotes CRP Gene:1401
1105 1093-1096 Gene denotes AST Gene:26503
1117 79-82 Species denotes men Tax:9606
1118 96-101 Species denotes women Tax:9606
1119 210-218 Species denotes patients Tax:9606
1120 468-476 Species denotes patients Tax:9606
1121 1447-1455 Species denotes patients Tax:9606
1122 1665-1673 Species denotes patients Tax:9606
1251 191-209 Disease denotes COVID‐19 pneumonia MESH:C000657245
1252 1098-1103 Disease denotes Fever MESH:D005334
1253 1115-1124 Disease denotes dry cough MESH:D003371
1254 1157-1166 Disease denotes dizziness MESH:D004244
1255 1176-1184 Disease denotes diarrhea MESH:D003967
1256 1194-1202 Disease denotes vomiting MESH:D014839
1257 1212-1220 Disease denotes headache MESH:D006261
1258 1259-1284 Disease denotes chronic pulmonary disease MESH:D008171
1259 1286-1298 Disease denotes tuberculosis MESH:D014376
1260 1312-1324 Disease denotes hypertension MESH:D006973
1261 1325-1362 Disease denotes cardiovascular/erebrovascular disease MESH:D002318
1262 1483-1501 Disease denotes COVID‐19 pneumonia MESH:C000657245