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PMC:7281546 / 9245-10863 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T24 54-57 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T25 74-80 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T26 143-149 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T27 511-519 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T28 611-619 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T29 684-692 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T30 1071-1077 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T31 1122-1130 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T32 1138-1145 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T33 1166-1178 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T34 1193-1205 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T35 1228-1235 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T36 1278-1285 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T37 1336-1343 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T38 1362-1370 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T39 1462-1465 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T40 1497-1500 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T2 228-232 Body_part denotes tail http://purl.obolibrary.org/obo/UBERON_0002415

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T64 58-63 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T65 105-106 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T66 170-172 http://purl.obolibrary.org/obo/CLO_0007074 denotes kb
T67 170-172 http://purl.obolibrary.org/obo/CLO_0051988 denotes kb
T68 195-196 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T69 214-217 http://purl.obolibrary.org/obo/CLO_0001577 denotes a 3
T70 225-226 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T71 228-232 http://purl.obolibrary.org/obo/UBERON_0002415 denotes tail
T72 328-333 http://purl.obolibrary.org/obo/OGG_0000000002 denotes genes
T73 594-596 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T74 930-931 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T75 1184-1192 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T76 1253-1254 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T77 1377-1378 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T30 511-519 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T31 611-619 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T32 684-692 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T33 1122-1130 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T34 1138-1145 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T35 1166-1178 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T36 1193-1205 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T37 1228-1235 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T38 1278-1285 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T39 1336-1343 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T40 1362-1370 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T24 1401-1414 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T25 1462-1475 http://purl.obolibrary.org/obo/GO_0032774 denotes RNA synthesis
T26 1466-1475 http://purl.obolibrary.org/obo/GO_0009058 denotes synthesis
T27 1591-1604 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T65 0-64 Sentence denotes PEDV is an enveloped, positive-sense, single-stranded RNA virus.
T66 65-132 Sentence denotes The PEDV genome constitution represents a standard CoV arrangement.
T67 133-356 Sentence denotes The viral genome is approximately 28 kb in length, containing a 5′ terminal cap, a 3′ poly (A) tail, as well as seven open reading frames (ORFs), including the ORF1a, ORF1b, S, ORF3, E, M, and N genes (Figure 1) [39,40,41].
T68 357-533 Sentence denotes The N terminal ORF1a and ORF1b encode two large replicase polyprotein precursors (pp1a and pp1ab), which are subsequently processed into 16 nonstructural proteins (nsp1 to 16).
T69 534-633 Sentence denotes ORF1a encodes pp1a which is cleaved by viral proteases into 11 nonstructural proteins (nsp1-nsp11).
T70 634-776 Sentence denotes The ORF1b generates five additional nonstructural proteins (nsp12–16) that are proteolytically cleaved by the viral proteases from pp1ab [42].
T71 777-923 Sentence denotes Nsp3 contains two papain-like protease domains (PLP1 and PLP2 or PLpro) that cleave the nsp1–4 region of the replicase polyprotein at three sites.
T72 924-1046 Sentence denotes Nsp5, a chymotrypsin-like enzyme also known as 3C-like protease, cleaves the polyprotein at remaining cleavage sites [43].
T73 1047-1302 Sentence denotes The C terminus of viral genome contains five ORFs, encoding four structure proteins (spike protein (S), small envelope glycoprotein (E), membrane glycoprotein (M), and nucleocapsid protein (N)), as well as a hypothetical accessory protein ORF3 [44,45,46].
T74 1303-1501 Sentence denotes The 16 nsps, together with the N protein, and several host proteins, form a large replication and transcription complex (RTC) that engages in the minus-strand RNA synthesis, using viral genomic RNA.
T75 1502-1618 Sentence denotes These nsps play important roles in virion structure modification and the replication and transcription of PEDV [47].

2_test

Id Subject Object Predicate Lexical cue
32403318-8209771-82827263 346-348 8209771 denotes 39
32403318-22270324-82827264 349-351 22270324 denotes 40
32403318-26743534-82827265 352-354 26743534 denotes 41
32403318-24269475-82827266 772-774 24269475 denotes 42
32403318-27712628-82827267 1042-1044 27712628 denotes 43
32403318-23562137-82827268 1292-1294 23562137 denotes 44
32403318-21613395-82827269 1295-1297 21613395 denotes 45
32403318-23936367-82827270 1298-1300 23936367 denotes 46
32403318-18451981-82827271 1614-1616 18451981 denotes 47

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
308 310-314 Gene denotes ORF3 Gene:136991
309 439-443 Gene denotes pp1a Gene:5499
310 521-525 Gene denotes nsp1 Gene:10045
311 548-552 Gene denotes pp1a Gene:5499
312 621-625 Gene denotes nsp1 Gene:10045
313 825-829 Gene denotes PLP1 Gene:5354
314 834-838 Gene denotes PLP2 Gene:5355
315 865-869 Gene denotes nsp1 Gene:10045
316 924-928 Gene denotes Nsp5 Gene:92521
317 1286-1290 Gene denotes ORF3 Gene:136991
318 0-4 Species denotes PEDV Tax:28295
319 69-73 Species denotes PEDV Tax:28295
320 116-119 Species denotes CoV Tax:11118
321 1608-1612 Species denotes PEDV Tax:28295